Motif 20

Information for 18-ASCYGACCRTYC (Motif 20)

Reverse Opposite:

p-value:	1e-227
log p-value:	-5.241e+02
Information Content per bp:	1.757
Number of Target Sequences with motif	92.0
Percentage of Target Sequences with motif	19.49%
Number of Background Sequences with motif	12.8
Percentage of Background Sequences with motif	0.03%
Average Position of motif in Targets	67.9 +/- 64.3bp
Average Position of motif in Background	86.5 +/- 67.6bp
Strand Bias (log2 ratio + to - strand density)	10.0
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:	1
Score:	0.60
Offset:	3
Orientation:	forward strand
Alignment:	ASCYGACCRTYC--- ---TGACCTTTNCNT

PB0049.1_Nr2f2_1/Jaspar

Match Rank:	2
Score:	0.59
Offset:	-1
Orientation:	reverse strand
Alignment:	-ASCYGACCRTYC--- NNNNTGACCTTTNNNN

NR2F2/MA1111.1/Jaspar

Match Rank:	3
Score:	0.59
Offset:	1
Orientation:	reverse strand
Alignment:	ASCYGACCRTYC -NNTGACCTTTN

NR4A1/MA1112.2/Jaspar

Match Rank:	4
Score:	0.58
Offset:	1
Orientation:	reverse strand
Alignment:	ASCYGACCRTYC- -NNTGACCTTTNN

PB0053.1_Rara_1/Jaspar

Match Rank:	5
Score:	0.58
Offset:	-1
Orientation:	reverse strand
Alignment:	-ASCYGACCRTYC--- NNNGTGACCTTTGNNN

NR2C1/MA1535.1/Jaspar

Match Rank:	6
Score:	0.56
Offset:	2
Orientation:	reverse strand
Alignment:	ASCYGACCRTYC --NTGACCTCN-

PB0046.1_Mybl1_1/Jaspar

Match Rank:	7
Score:	0.55
Offset:	-1
Orientation:	forward strand
Alignment:	-ASCYGACCRTYC---- TTGAAAACCGTTAATTT

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:	8
Score:	0.55
Offset:	2
Orientation:	reverse strand
Alignment:	ASCYGACCRTYC --NTGACCTN--

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:	9
Score:	0.55
Offset:	-1
Orientation:	reverse strand
Alignment:	-ASCYGACCRTYC NNACTTACCTN--

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:	10
Score:	0.54
Offset:	3
Orientation:	reverse strand
Alignment:	ASCYGACCRTYC--- ---TGACCTYTGVMC