Information for 25-ACATRYTGTTAA (Motif 29)

G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A
Reverse Opposite:
A C G T A C G T G C T A T C G A T A G C C G T A C T G A G A T C C G T A A G C T A T C G A C G T
p-value:1e-55
log p-value:-1.283e+02
Information Content per bp:1.712
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif5.93%
Number of Background Sequences with motif11.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets97.7 +/- 31.4bp
Average Position of motif in Background89.0 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ACATRYTGTTAA
--AAGGTGTKAA
 G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A

PB0109.1_Bbx_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACATRYTGTTAA------
-NNNNCTGTTAACNNTNN
 G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ACATRYTGTTAA
AAGAACATWHTGTTC-
 A C G T A C G T A C G T A C G T G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACATRYTGTTAA-----
ANNNCTAGTTAACNGNN
 G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACATRYTGTTAA------
-NNNTTAGTTAACTNANN
 G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACATRYTGTTAA------
-NTTTTAGTTAACNNAGN
 G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PH0086.1_Irx5/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------ACATRYTGTTAA
ANTNNTACATGTANNTN-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACATRYTGTTAA----
AAGACGCTGTAAAGCGA
 A C G T G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACATRYTGTTAA----
AAGACGCTGTAAAGCGA
 A C G T G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ACATRYTGTTAA
VAGRACAKWCTGTYC-
 A C G T A C G T A C G T A C G T G T C A T A G C C T G A C G A T C T A G A G C T A C G T A C T G A C G T C A G T C G T A T C G A
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C A C G T