Information for 5-GAGGATTAGTAA (Motif 5)

C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
Reverse Opposite:
G A C T A G C T C T G A G T A C A G C T C T G A C G T A G A C T G T A C A G T C C G A T G A T C
p-value:1e-660
log p-value:-1.521e+03
Information Content per bp:1.921
Number of Target Sequences with motif292.0
Percentage of Target Sequences with motif61.86%
Number of Background Sequences with motif82.9
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets51.3 +/- 20.1bp
Average Position of motif in Background106.7 +/- 77.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAGGATTAGTAA
AAGAGGATTAG---
 A C G T A C G T C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GAGGATTAGTAA
AAGGGATTAGAA-
 A C G T C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GAGGATTAGTAA
GNGGATTAGN--
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GAGGATTAGTAA
NNGGATTAGN--
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PITX1/MA0682.2/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGGATTAGTAA
-NGGATTAN---
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
A C G T C A T G T C A G C A T G G T C A A C G T A C G T C G T A C T A G A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAGGATTAGTAA
--GGATTAGC--
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GAGGATTAGTAA
VRGGATTARN--
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGATTAGTAA
-RGGATTAR---
 C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GAGGATTAGTAA--
TGAAGGGATTAATCATC
 A C G T A C G T A C G T C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---GAGGATTAGTAA--
NNAAGGGATTAACGANT
 A C G T A C G T A C G T C A T G C G T A T C A G A C T G C G T A C G A T A G C T T C G A A C T G A G C T C T G A C G T A A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T