Information for 1-TRWGYAAACA (Motif 1)

G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
Reverse Opposite:
C G A T C T A G A G C T C A G T A C G T T C G A A G T C G C T A A G T C C G T A
p-value:1e-7068
log p-value:-1.628e+04
Information Content per bp:1.703
Number of Target Sequences with motif40837.0
Percentage of Target Sequences with motif63.26%
Number of Background Sequences with motif67759.8
Percentage of Background Sequences with motif25.12%
Average Position of motif in Targets259.8 +/- 166.9bp
Average Position of motif in Background246.0 +/- 232.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

pha-4/MA0546.1/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:TRWGYAAACA
AAAGTAAACA
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
G C T A C T G A C G T A C T A G A G C T G T C A C G T A C G T A A G T C C G T A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.95
Offset:-5
Orientation:forward strand
Alignment:-----TRWGYAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TRWGYAAACA
AAAGTAAACA
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TRWGYAAACA
AAAGTAAACA
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TRWGYAAACA
WAAGTAAAYA
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

fkh/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-TRWGYAAACA
TTANGCAAACA
 A C G T G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
C G A T G C A T T C G A C G T A C T A G A G T C G T C A C T G A C T G A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:TRWGYAAACA--
TATGTAAACANG
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--TRWGYAAACA---
NCWRWGTAAACANSV
 A C G T A C G T G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

fkh/MA0446.1/Jaspar

Match Rank:9
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TRWGYAAACA
TTAAGCAAACA
 A C G T G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A
A C G T G C A T T C G A C T G A C T A G A G T C G T C A C G T A C G T A A G T C C G T A

FOXA3/MA1683.1/Jaspar

Match Rank:10
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TRWGYAAACA--
-ATGTAAACATA
 G C A T T C A G C G A T C T A G A G C T G T C A G T C A C T G A A G T C C G T A A C G T A C G T
A C G T C T G A C G A T C T A G G A C T G T C A G T C A G C T A A G T C G C T A C G A T C G T A