Information for 1-CCAGGCWG (Motif 3)

T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
Reverse Opposite:
T A G C C G A T A C T G A T G C A G T C C G A T A C T G A C T G
p-value:1e-5076
log p-value:-1.169e+04
Information Content per bp:1.737
Number of Target Sequences with motif31655.0
Percentage of Target Sequences with motif49.03%
Number of Background Sequences with motif50299.2
Percentage of Background Sequences with motif18.65%
Average Position of motif in Targets255.6 +/- 189.3bp
Average Position of motif in Background233.4 +/- 242.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCAGGCWG
CCAGACAG
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

CRZ1(MacIsaac)/Yeast

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CCAGGCWG
-CAGCCAC
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
A C G T A G T C C G T A A C T G A G T C A G T C C G A T A G T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCAGGCWG
BCAGACWA
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tag/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CCAGGCWG
-CAGGTAG
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
A C G T A G T C C G T A A C T G A T C G A G C T C G T A C T A G

ARF34/MA1693.1/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCAGGCWG----
AACAGACAGCAAG
 A C G T T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G A C G T A C G T A C G T A C G T
C T G A C T G A T A G C T G C A T C A G T C G A T A G C C G T A C A T G T G A C T G C A T C G A T A C G

SWI5/Literature(Harbison)/Yeast

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCAGGCWG
CCAGCA--
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
A G C T A G T C C G T A A C T G A G T C G T A C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGCWG
CACAGN---
 A C G T T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

SOK2(MacIsaac)/Yeast

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCAGGCWG
GCAGGCAA
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G
C T A G G A T C C T G A A T C G A C T G T G A C T C G A T G C A

sma-4/MA0925.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCAGGCWG-
NNCCAGACANN
 A C G T A C G T T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G A C G T
A C T G A G C T G T A C A G T C C G T A A C T G C G T A G T A C C G T A A G T C A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCAGGCWG--
CCAGACRSVB
 T G A C A G T C C G T A A C T G A T C G G T A C C G T A A T C G A C G T A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C