Information for 3-WGGVCAGGAR (Motif 6)

C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
Reverse Opposite:
A G T C A G C T A G T C A G T C C G A T A C T G A C G T A T G C A G T C G C A T
p-value:1e-4322
log p-value:-9.953e+03
Information Content per bp:1.612
Number of Target Sequences with motif41312.0
Percentage of Target Sequences with motif63.99%
Number of Background Sequences with motif90327.6
Percentage of Background Sequences with motif33.49%
Average Position of motif in Targets261.4 +/- 199.5bp
Average Position of motif in Background235.7 +/- 269.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.99
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PCBP1(KH)/Homo_sapiens-RNCMPT00186-PBM/HughesRNA

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:WGGVCAGGAR
-GGAAAGG--
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
A C G T A C T G A C T G C G T A C G T A C G T A A C T G A C T G A C G T A C G T

pros/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:WGGVCAGGAR
AGNCATG---
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
C T G A A C T G G C T A T A G C C T G A C G A T A C T G A C G T A C G T A C G T

ttk/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:WGGVCAGGAR-
--GCCAGGACC
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G A C G T
A C G T A C G T T A C G A T C G T G A C C T G A A C T G A C T G C G T A A G T C G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:WGGVCAGGAR
--CACAGN--
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PCBP1(KH)/Mus_musculus-RNCMPT00239-PBM/HughesRNA

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:WGGVCAGGAR
GGGAAAGG--
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
C T A G A C T G A C T G C G T A C G T A C T G A A C T G A C T G A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00110-PBM/HughesRNA

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:WGGVCAGGAR--
----CAGGACAN
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G A C T G C G T A A T G C G T C A T G C A

Vts1p(SAM)/Saccharomyces_cerevisiae-RNCMPT00082-PBM/HughesRNA

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:WGGVCAGGAR
-GGCCAGCN-
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
A C G T A T C G C T A G A G T C A G T C C G T A A C T G A G T C T C G A A C G T

IKZF1/MA1508.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:WGGVCAGGAR--
GAAACAGGAAGT
 C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G A C G T A C G T
T C A G T C G A T G C A T C G A T A G C C G T A C T A G T C A G T C G A C G T A T C A G A G C T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WGGVCAGGAR-
TGGGGAAGGGCM
 A C G T C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G A C G T
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---WGGVCAGGAR
CCAGGAACAG---
 A C G T A C G T A C G T C G T A A C T G T A C G T G C A T G A C C G T A A C T G T C A G C T G A T C A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T