Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 64564)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 269714)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6612	-1.523e+04	0.0000	37731.0	58.44%	59984.3	22.24%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-6588	-1.517e+04	0.0000	37717.0	58.42%	60089.9	22.28%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-6466	-1.489e+04	0.0000	40857.0	63.29%	71803.7	26.62%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-6077	-1.399e+04	0.0000	30778.0	47.67%	41617.6	15.43%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4969	-1.144e+04	0.0000	30608.0	47.41%	47770.7	17.71%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4932	-1.136e+04	0.0000	39439.0	61.09%	77938.5	28.90%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-4648	-1.070e+04	0.0000	11596.0	17.96%	5024.3	1.86%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4255	-9.799e+03	0.0000	9673.0	14.98%	3293.8	1.22%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3915	-9.017e+03	0.0000	12151.0	18.82%	7829.0	2.90%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3803	-8.759e+03	0.0000	18217.0	28.22%	20827.0	7.72%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-3604	-8.300e+03	0.0000	45392.0	70.31%	114312.5	42.38%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-3571	-8.223e+03	0.0000	12800.0	19.83%	10154.3	3.76%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3330	-7.668e+03	0.0000	8296.0	12.85%	3429.0	1.27%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-3240	-7.461e+03	0.0000	26569.0	41.15%	47752.8	17.70%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-3132	-7.212e+03	0.0000	52837.0	81.84%	154820.3	57.40%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2958	-6.813e+03	0.0000	25664.0	39.75%	47227.0	17.51%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2764	-6.365e+03	0.0000	29319.0	45.41%	61028.6	22.63%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2688	-6.191e+03	0.0000	34178.0	52.94%	79177.2	29.36%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2640	-6.081e+03	0.0000	30739.0	47.61%	67209.3	24.92%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2440	-5.619e+03	0.0000	41846.0	64.82%	112547.3	41.73%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2373	-5.464e+03	0.0000	15208.0	23.56%	21496.6	7.97%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2361	-5.439e+03	0.0000	25311.0	39.21%	51515.8	19.10%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2351	-5.414e+03	0.0000	31076.0	48.14%	71538.2	26.52%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2136	-4.919e+03	0.0000	46122.0	71.44%	135287.5	50.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2106	-4.850e+03	0.0000	17402.0	26.96%	29426.4	10.91%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2085	-4.803e+03	0.0000	20048.0	31.05%	37438.0	13.88%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2074	-4.776e+03	0.0000	7209.0	11.17%	5196.0	1.93%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1852	-4.266e+03	0.0000	54368.0	84.21%	179461.4	66.54%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1835	-4.225e+03	0.0000	18730.0	29.01%	35736.4	13.25%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1824	-4.200e+03	0.0000	27050.0	41.90%	63337.4	23.48%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1773	-4.085e+03	0.0000	14448.0	22.38%	23758.2	8.81%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1711	-3.941e+03	0.0000	6289.0	9.74%	4836.0	1.79%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1693	-3.899e+03	0.0000	19758.0	30.60%	40356.6	14.96%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-1677	-3.864e+03	0.0000	5501.0	8.52%	3588.5	1.33%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1658	-3.818e+03	0.0000	19533.0	30.26%	40009.8	14.83%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1654	-3.810e+03	0.0000	15168.0	23.49%	26792.2	9.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1619	-3.730e+03	0.0000	15837.0	24.53%	29056.0	10.77%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1592	-3.667e+03	0.0000	14196.0	21.99%	24543.7	9.10%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1441	-3.320e+03	0.0000	22624.0	35.04%	52731.5	19.55%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1441	-3.319e+03	0.0000	13203.0	20.45%	23030.6	8.54%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1404	-3.234e+03	0.0000	22623.0	35.04%	53212.4	19.73%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1343	-3.093e+03	0.0000	9697.0	15.02%	14323.7	5.31%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1341	-3.090e+03	0.0000	17465.0	27.05%	36887.0	13.68%
SeqBias: CA-repeat	CACACACACA	1e-1297	-2.987e+03	0.0000	51600.0	79.93%	174252.2	64.61%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1246	-2.870e+03	0.0000	8985.0	13.92%	13198.4	4.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1202	-2.769e+03	0.0000	17659.0	27.35%	39158.3	14.52%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1192	-2.747e+03	0.0000	14896.0	23.07%	30494.4	11.31%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1188	-2.736e+03	0.0000	16326.0	25.29%	35033.7	12.99%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1172	-2.700e+03	0.0000	18172.0	28.15%	41210.4	15.28%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1151	-2.653e+03	0.0000	10391.0	16.10%	17671.8	6.55%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1151	-2.651e+03	0.0000	19835.0	30.72%	47061.2	17.45%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-1119	-2.577e+03	0.0000	49870.0	77.25%	169125.3	62.71%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1111	-2.560e+03	0.0000	16065.0	24.88%	35118.0	13.02%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1103	-2.541e+03	0.0000	10721.0	16.61%	19020.9	7.05%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1089	-2.508e+03	0.0000	17835.0	27.63%	41180.7	15.27%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-1087	-2.505e+03	0.0000	28921.0	44.80%	80866.0	29.98%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1086	-2.501e+03	0.0000	11345.0	17.57%	20966.7	7.77%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1071	-2.466e+03	0.0000	12136.0	18.80%	23430.1	8.69%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1069	-2.462e+03	0.0000	18578.0	28.78%	43938.6	16.29%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1048	-2.414e+03	0.0000	11348.0	17.58%	21343.1	7.91%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1023	-2.357e+03	0.0000	6097.0	9.44%	7637.3	2.83%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1019	-2.347e+03	0.0000	12177.0	18.86%	24096.2	8.93%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1018	-2.346e+03	0.0000	15135.0	23.44%	33283.2	12.34%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1018	-2.345e+03	0.0000	25094.0	38.87%	67721.3	25.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-997	-2.296e+03	0.0000	15495.0	24.00%	34716.9	12.87%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-996	-2.295e+03	0.0000	7390.0	11.45%	10950.9	4.06%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-974	-2.243e+03	0.0000	11981.0	18.56%	23991.4	8.90%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-961	-2.213e+03	0.0000	11669.0	18.07%	23196.1	8.60%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-958	-2.207e+03	0.0000	17238.0	26.70%	40980.2	15.19%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-957	-2.204e+03	0.0000	3160.0	4.89%	2036.8	0.76%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-919	-2.118e+03	0.0000	3115.0	4.83%	2083.8	0.77%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-898	-2.070e+03	0.0000	11069.0	17.15%	22073.3	8.18%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-893	-2.058e+03	0.0000	9155.0	14.18%	16549.3	6.14%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-876	-2.019e+03	0.0000	10876.0	16.85%	21736.7	8.06%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-873	-2.011e+03	0.0000	33701.0	52.20%	103712.5	38.45%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-864	-1.990e+03	0.0000	39805.0	61.66%	129222.8	47.91%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-857	-1.974e+03	0.0000	9233.0	14.30%	17124.4	6.35%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-850	-1.958e+03	0.0000	26059.0	40.36%	74327.1	27.56%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-842	-1.941e+03	0.0000	8824.0	13.67%	16101.5	5.97%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-835	-1.925e+03	0.0000	5259.0	8.15%	6836.0	2.53%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-832	-1.917e+03	0.0000	19730.0	30.56%	51501.2	19.09%
Tal1	CATCTG	1e-798	-1.839e+03	0.0000	17485.0	27.08%	44220.3	16.40%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e-786	-1.812e+03	0.0000	9244.0	14.32%	17875.7	6.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-780	-1.797e+03	0.0000	7287.0	11.29%	12410.4	4.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-765	-1.763e+03	0.0000	9949.0	15.41%	20196.1	7.49%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-764	-1.761e+03	0.0000	3458.0	5.36%	3303.6	1.22%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-750	-1.729e+03	0.0000	19992.0	30.97%	53853.6	19.97%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-737	-1.698e+03	0.0000	11392.0	17.65%	24978.4	9.26%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-729	-1.680e+03	0.0000	8801.0	13.63%	17190.4	6.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-722	-1.664e+03	0.0000	12865.0	19.93%	29879.8	11.08%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-717	-1.652e+03	0.0000	38410.0	59.50%	126629.5	46.95%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-717	-1.651e+03	0.0000	10190.0	15.78%	21500.4	7.97%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-711	-1.639e+03	0.0000	6719.0	10.41%	11474.5	4.25%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-703	-1.619e+03	0.0000	9373.0	14.52%	19185.7	7.11%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-696	-1.605e+03	0.0000	8606.0	13.33%	16971.9	6.29%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-695	-1.602e+03	0.0000	12248.0	18.97%	28263.9	10.48%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-694	-1.599e+03	0.0000	24849.0	38.49%	72867.2	27.02%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-669	-1.540e+03	0.0000	14076.0	21.80%	34683.1	12.86%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-650	-1.498e+03	0.0000	9378.0	14.53%	19827.6	7.35%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-645	-1.486e+03	0.0000	3657.0	5.66%	4325.3	1.60%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-631	-1.454e+03	0.0000	7121.0	11.03%	13361.3	4.95%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-619	-1.425e+03	0.0000	12955.0	20.07%	31722.1	11.76%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-612	-1.410e+03	0.0000	32577.0	50.46%	105074.1	38.96%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-611	-1.409e+03	0.0000	18579.0	28.78%	51382.2	19.05%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-608	-1.402e+03	0.0000	27105.0	41.98%	83428.8	30.93%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-605	-1.394e+03	0.0000	10375.0	16.07%	23522.4	8.72%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-586	-1.351e+03	0.0000	15153.0	23.47%	39743.1	14.74%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-585	-1.349e+03	0.0000	13699.0	21.22%	34767.6	12.89%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-581	-1.339e+03	0.0000	16528.0	25.60%	44651.2	16.55%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-569	-1.312e+03	0.0000	5852.0	9.06%	10408.7	3.86%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-569	-1.311e+03	0.0000	6367.0	9.86%	11853.9	4.39%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-565	-1.302e+03	0.0000	49177.0	76.17%	177936.1	65.97%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-564	-1.300e+03	0.0000	38845.0	60.17%	132325.4	49.06%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-556	-1.281e+03	0.0000	30893.0	47.85%	99701.0	36.97%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-554	-1.278e+03	0.0000	11020.0	17.07%	26335.4	9.76%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-547	-1.262e+03	0.0000	7530.0	11.66%	15476.9	5.74%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-543	-1.250e+03	0.0000	52245.0	80.93%	192886.2	71.51%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-536	-1.236e+03	0.0000	7725.0	11.97%	16197.5	6.01%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-535	-1.234e+03	0.0000	22947.0	35.54%	69174.9	25.65%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-524	-1.207e+03	0.0000	17970.0	27.84%	50964.1	18.90%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-514	-1.185e+03	0.0000	32016.0	49.59%	105338.8	39.06%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-510	-1.177e+03	0.0000	5813.0	9.00%	10882.2	4.03%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-507	-1.168e+03	0.0000	5656.0	8.76%	10479.6	3.89%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-506	-1.166e+03	0.0000	6819.0	10.56%	13847.1	5.13%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-503	-1.159e+03	0.0000	11873.0	18.39%	29995.7	11.12%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-503	-1.159e+03	0.0000	18728.0	29.01%	54183.2	20.09%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-487	-1.122e+03	0.0000	5447.0	8.44%	10092.6	3.74%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-483	-1.114e+03	0.0000	4345.0	6.73%	7125.5	2.64%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-478	-1.102e+03	0.0000	5559.0	8.61%	10498.4	3.89%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-476	-1.097e+03	0.0000	5501.0	8.52%	10355.2	3.84%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-473	-1.091e+03	0.0000	9439.0	14.62%	22435.8	8.32%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-472	-1.087e+03	0.0000	4052.0	6.28%	6457.1	2.39%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-471	-1.086e+03	0.0000	5338.0	8.27%	9944.1	3.69%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-471	-1.085e+03	0.0000	15262.0	23.64%	42340.5	15.70%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-471	-1.085e+03	0.0000	7987.0	12.37%	17855.3	6.62%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-465	-1.072e+03	0.0000	36990.0	57.30%	127265.1	47.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-460	-1.060e+03	0.0000	26722.0	41.39%	85678.0	31.77%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-459	-1.058e+03	0.0000	12409.0	19.22%	32601.7	12.09%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-457	-1.054e+03	0.0000	14097.0	21.84%	38503.0	14.28%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-449	-1.035e+03	0.0000	26425.0	40.93%	84808.6	31.44%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-448	-1.033e+03	0.0000	11771.0	18.23%	30616.0	11.35%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-439	-1.012e+03	0.0000	16342.0	25.31%	46905.0	17.39%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-434	-9.993e+02	0.0000	5752.0	8.91%	11546.5	4.28%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-431	-9.931e+02	0.0000	9928.0	15.38%	24723.3	9.17%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-423	-9.750e+02	0.0000	34505.0	53.45%	118175.4	43.81%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-418	-9.640e+02	0.0000	13912.0	21.55%	38650.3	14.33%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-416	-9.587e+02	0.0000	5553.0	8.60%	11167.1	4.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-415	-9.577e+02	0.0000	10577.0	16.38%	27162.3	10.07%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-405	-9.337e+02	0.0000	10114.0	15.67%	25791.4	9.56%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-405	-9.335e+02	0.0000	5683.0	8.80%	11680.9	4.33%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-399	-9.209e+02	0.0000	8166.0	12.65%	19468.3	7.22%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-395	-9.111e+02	0.0000	11693.0	18.11%	31355.3	11.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-386	-8.891e+02	0.0000	7552.0	11.70%	17711.5	6.57%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-378	-8.718e+02	0.0000	7754.0	12.01%	18475.8	6.85%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-376	-8.679e+02	0.0000	9084.0	14.07%	22855.6	8.47%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-374	-8.612e+02	0.0000	16099.0	24.94%	47545.0	17.63%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-373	-8.611e+02	0.0000	8214.0	12.72%	20040.4	7.43%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-373	-8.590e+02	0.0000	3114.0	4.82%	4856.2	1.80%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-371	-8.562e+02	0.0000	26258.0	40.67%	86390.9	32.03%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-368	-8.492e+02	0.0000	18894.0	29.27%	58052.2	21.52%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-367	-8.472e+02	0.0000	3531.0	5.47%	5986.3	2.22%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-367	-8.457e+02	0.0000	22448.0	34.77%	71637.8	26.56%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-366	-8.431e+02	0.0000	9591.0	14.86%	24744.8	9.17%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-354	-8.158e+02	0.0000	14110.0	21.86%	40788.2	15.12%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-352	-8.116e+02	0.0000	22617.0	35.03%	72723.1	26.96%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-350	-8.062e+02	0.0000	15425.0	23.89%	45666.0	16.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-348	-8.022e+02	0.0000	6709.0	10.39%	15602.6	5.78%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-347	-7.994e+02	0.0000	4566.0	7.07%	9087.1	3.37%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-347	-7.992e+02	0.0000	8233.0	12.75%	20556.3	7.62%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-344	-7.930e+02	0.0000	4487.0	6.95%	8890.2	3.30%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-344	-7.927e+02	0.0000	5065.0	7.85%	10592.8	3.93%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-338	-7.798e+02	0.0000	55197.0	85.50%	212568.8	78.81%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-337	-7.776e+02	0.0000	12337.0	19.11%	34830.2	12.91%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-334	-7.714e+02	0.0000	6705.0	10.39%	15794.3	5.86%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-331	-7.622e+02	0.0000	13677.0	21.19%	39780.2	14.75%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-327	-7.546e+02	0.0000	6561.0	10.16%	15448.7	5.73%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-323	-7.458e+02	0.0000	8219.0	12.73%	20921.0	7.76%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-322	-7.428e+02	0.0000	12311.0	19.07%	35082.0	13.01%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-322	-7.421e+02	0.0000	4819.0	7.46%	10133.5	3.76%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-320	-7.378e+02	0.0000	20787.0	32.20%	66620.0	24.70%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-314	-7.244e+02	0.0000	2823.0	4.37%	4591.2	1.70%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-313	-7.230e+02	0.0000	13849.0	21.45%	40821.1	15.13%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-313	-7.226e+02	0.0000	12331.0	19.10%	35357.1	13.11%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-313	-7.219e+02	0.0000	2592.0	4.01%	4008.9	1.49%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-309	-7.117e+02	0.0000	54758.0	84.82%	211345.0	78.36%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-306	-7.065e+02	0.0000	33681.0	52.17%	118618.4	43.98%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-304	-7.016e+02	0.0000	10570.0	16.37%	29340.4	10.88%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-304	-7.000e+02	0.0000	14792.0	22.91%	44523.1	16.51%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-289	-6.662e+02	0.0000	836.0	1.29%	426.4	0.16%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-289	-6.655e+02	0.0000	12351.0	19.13%	36026.1	13.36%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-287	-6.612e+02	0.0000	6048.0	9.37%	14449.6	5.36%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-284	-6.558e+02	0.0000	2813.0	4.36%	4829.9	1.79%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-279	-6.442e+02	0.0000	28052.0	43.45%	96605.1	35.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-278	-6.411e+02	0.0000	6823.0	10.57%	17113.6	6.35%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-275	-6.340e+02	0.0000	7746.0	12.00%	20244.6	7.51%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-273	-6.295e+02	0.0000	10287.0	15.93%	29050.7	10.77%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-272	-6.265e+02	0.0000	1355.0	2.10%	1407.2	0.52%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-271	-6.254e+02	0.0000	9290.0	14.39%	25604.0	9.49%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-266	-6.136e+02	0.0000	1187.0	1.84%	1100.9	0.41%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-262	-6.048e+02	0.0000	2843.0	4.40%	5122.6	1.90%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-259	-5.986e+02	0.0000	17705.0	27.42%	56699.5	21.02%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-259	-5.978e+02	0.0000	7265.0	11.25%	18931.7	7.02%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-259	-5.974e+02	0.0000	5252.0	8.14%	12352.3	4.58%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-258	-5.957e+02	0.0000	4765.0	7.38%	10834.4	4.02%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-258	-5.948e+02	0.0000	36685.0	56.82%	132989.2	49.31%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-258	-5.943e+02	0.0000	30583.0	47.37%	107691.6	39.93%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-254	-5.856e+02	0.0000	10950.0	16.96%	31861.7	11.81%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-252	-5.819e+02	0.0000	32522.0	50.38%	115866.5	42.96%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-251	-5.786e+02	0.0000	11643.0	18.03%	34430.5	12.77%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-251	-5.785e+02	0.0000	2794.0	4.33%	5102.7	1.89%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-250	-5.768e+02	0.0000	16221.0	25.13%	51374.4	19.05%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-249	-5.744e+02	0.0000	26156.0	40.51%	90106.6	33.41%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-249	-5.734e+02	0.0000	8919.0	13.82%	24813.4	9.20%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-248	-5.717e+02	0.0000	2949.0	4.57%	5564.3	2.06%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-246	-5.677e+02	0.0000	12494.0	19.35%	37648.4	13.96%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-246	-5.669e+02	0.0000	1802.0	2.79%	2564.1	0.95%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-244	-5.635e+02	0.0000	41847.0	64.82%	155520.5	57.66%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-244	-5.626e+02	0.0000	28984.0	44.90%	101711.2	37.71%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-244	-5.619e+02	0.0000	25279.0	39.16%	86805.2	32.18%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-243	-5.613e+02	0.0000	18769.0	29.07%	61296.4	22.73%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-240	-5.548e+02	0.0000	10267.0	15.90%	29756.4	11.03%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-240	-5.543e+02	0.0000	14311.0	22.17%	44514.3	16.50%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-239	-5.507e+02	0.0000	14269.0	22.10%	44404.9	16.46%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-233	-5.388e+02	0.0000	4690.0	7.26%	10973.5	4.07%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-233	-5.380e+02	0.0000	14900.0	23.08%	46929.8	17.40%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-232	-5.346e+02	0.0000	32762.0	50.75%	117688.9	43.63%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-231	-5.340e+02	0.0000	1310.0	2.03%	1525.6	0.57%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-230	-5.318e+02	0.0000	4656.0	7.21%	10913.6	4.05%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-227	-5.239e+02	0.0000	23285.0	36.07%	79508.6	29.48%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-224	-5.179e+02	0.0000	7539.0	11.68%	20572.2	7.63%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-224	-5.177e+02	0.0000	13788.0	21.36%	43046.1	15.96%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-223	-5.149e+02	0.0000	1281.0	1.98%	1509.1	0.56%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-219	-5.053e+02	0.0000	2420.0	3.75%	4394.2	1.63%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-217	-5.019e+02	0.0000	27192.0	42.12%	95509.8	35.41%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-214	-4.938e+02	0.0000	8486.0	13.14%	24101.4	8.94%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-211	-4.869e+02	0.0000	6176.0	9.57%	16220.2	6.01%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-205	-4.725e+02	0.0000	2367.0	3.67%	4394.4	1.63%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-204	-4.711e+02	0.0000	25176.0	39.00%	87949.1	32.61%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-201	-4.648e+02	0.0000	38132.0	59.07%	141474.7	52.45%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-201	-4.642e+02	0.0000	27608.0	42.76%	97877.1	36.29%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-201	-4.631e+02	0.0000	7106.0	11.01%	19606.1	7.27%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-199	-4.598e+02	0.0000	1502.0	2.33%	2175.6	0.81%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-196	-4.532e+02	0.0000	32614.0	50.52%	118598.3	43.97%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-195	-4.506e+02	0.0000	32838.0	50.87%	119575.2	44.33%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-195	-4.500e+02	0.0000	10192.0	15.79%	30689.3	11.38%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-194	-4.486e+02	0.0000	16785.0	26.00%	55380.7	20.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-194	-4.481e+02	0.0000	5900.0	9.14%	15632.4	5.80%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-192	-4.423e+02	0.0000	32696.0	50.65%	119150.6	44.18%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-190	-4.387e+02	0.0000	26215.0	40.61%	92724.6	34.38%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-190	-4.386e+02	0.0000	26172.0	40.54%	92553.8	34.32%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-188	-4.332e+02	0.0000	2852.0	4.42%	5986.1	2.22%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-186	-4.295e+02	0.0000	10168.0	15.75%	30855.0	11.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-186	-4.290e+02	0.0000	4125.0	6.39%	9947.9	3.69%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-185	-4.274e+02	0.0000	11044.0	17.11%	34087.0	12.64%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-183	-4.228e+02	0.0000	28559.0	44.24%	102535.1	38.02%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-182	-4.209e+02	0.0000	10883.0	16.86%	33580.7	12.45%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-182	-4.207e+02	0.0000	26271.0	40.69%	93294.7	34.59%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-178	-4.117e+02	0.0000	4863.0	7.53%	12483.4	4.63%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-177	-4.076e+02	0.0000	3282.0	5.08%	7442.1	2.76%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-173	-3.994e+02	0.0000	37488.0	58.07%	140074.6	51.93%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-172	-3.964e+02	0.0000	16005.0	24.79%	53226.0	19.73%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-171	-3.941e+02	0.0000	35282.0	54.65%	130909.0	48.54%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-170	-3.922e+02	0.0000	38205.0	59.18%	143258.8	53.11%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-169	-3.905e+02	0.0000	43877.0	67.96%	167592.4	62.14%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-165	-3.815e+02	0.0000	9843.0	15.25%	30287.7	11.23%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-165	-3.811e+02	0.0000	10749.0	16.65%	33623.6	12.47%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-162	-3.751e+02	0.0000	41771.0	64.70%	158832.7	58.89%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-157	-3.619e+02	0.0000	8980.0	13.91%	27396.3	10.16%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-156	-3.604e+02	0.0000	8259.0	12.79%	24805.0	9.20%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-155	-3.582e+02	0.0000	4784.0	7.41%	12682.4	4.70%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-154	-3.553e+02	0.0000	12497.0	19.36%	40529.9	15.03%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-154	-3.549e+02	0.0000	18859.0	29.21%	65043.5	24.12%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-153	-3.542e+02	0.0000	1814.0	2.81%	3398.9	1.26%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-153	-3.541e+02	0.0000	7092.0	10.99%	20709.6	7.68%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-153	-3.534e+02	0.0000	25787.0	39.94%	92695.6	34.37%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-153	-3.531e+02	0.0000	3933.0	6.09%	9905.1	3.67%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-152	-3.505e+02	0.0000	2588.0	4.01%	5675.5	2.10%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-150	-3.468e+02	0.0000	1055.0	1.63%	1453.0	0.54%
SeqBias: TA-repeat	TATATATATA	1e-150	-3.459e+02	0.0000	45274.0	70.13%	174611.8	64.74%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-149	-3.436e+02	0.0000	10538.0	16.32%	33375.4	12.37%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-148	-3.421e+02	0.0000	3431.0	5.31%	8365.3	3.10%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-148	-3.412e+02	0.0000	2703.0	4.19%	6084.6	2.26%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-147	-3.408e+02	0.0000	15739.0	24.38%	53153.9	19.71%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-146	-3.370e+02	0.0000	29620.0	45.88%	108677.8	40.29%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-146	-3.362e+02	0.0000	3455.0	5.35%	8487.3	3.15%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-144	-3.330e+02	0.0000	2234.0	3.46%	4716.8	1.75%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-144	-3.323e+02	0.0000	15211.0	23.56%	51266.5	19.01%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-143	-3.307e+02	0.0000	41019.0	63.54%	156591.1	58.06%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-142	-3.289e+02	0.0000	1324.0	2.05%	2183.8	0.81%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-142	-3.285e+02	0.0000	40141.0	62.18%	152893.3	56.69%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-141	-3.258e+02	0.0000	3028.0	4.69%	7201.1	2.67%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-141	-3.256e+02	0.0000	4604.0	7.13%	12374.8	4.59%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-141	-3.252e+02	0.0000	27898.0	43.21%	101888.5	37.78%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-141	-3.249e+02	0.0000	1292.0	2.00%	2115.2	0.78%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-140	-3.237e+02	0.0000	26407.0	40.90%	95849.4	35.54%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-140	-3.227e+02	0.0000	3693.0	5.72%	9366.9	3.47%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-140	-3.224e+02	0.0000	2855.0	4.42%	6680.9	2.48%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-139	-3.212e+02	0.0000	46277.0	71.68%	179529.0	66.56%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-139	-3.205e+02	0.0000	6303.0	9.76%	18304.3	6.79%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-138	-3.194e+02	0.0000	912.0	1.41%	1199.3	0.44%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-136	-3.151e+02	0.0000	2060.0	3.19%	4302.4	1.60%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-135	-3.121e+02	0.0000	4075.0	6.31%	10720.2	3.97%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-135	-3.109e+02	0.0000	9457.0	14.65%	29846.2	11.07%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-134	-3.096e+02	0.0000	1191.0	1.84%	1912.2	0.71%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-132	-3.054e+02	0.0000	1543.0	2.39%	2870.8	1.06%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-132	-3.047e+02	0.0000	3233.0	5.01%	8013.9	2.97%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-132	-3.040e+02	0.0000	3615.0	5.60%	9265.1	3.44%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-131	-3.039e+02	0.0000	9425.0	14.60%	29830.2	11.06%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-131	-3.029e+02	0.0000	7950.0	12.31%	24429.8	9.06%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-131	-3.017e+02	0.0000	5415.0	8.39%	15400.6	5.71%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-130	-3.006e+02	0.0000	11741.0	18.19%	38554.1	14.29%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-130	-3.004e+02	0.0000	12552.0	19.44%	41636.7	15.44%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-129	-2.985e+02	0.0000	19593.0	30.35%	69058.1	25.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-128	-2.969e+02	0.0000	1013.0	1.57%	1510.0	0.56%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-128	-2.965e+02	0.0000	588.0	0.91%	560.1	0.21%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-126	-2.909e+02	0.0000	2368.0	3.67%	5377.8	1.99%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-124	-2.874e+02	0.0000	2639.0	4.09%	6245.9	2.32%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-124	-2.868e+02	0.0000	43197.0	66.91%	166975.8	61.91%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-124	-2.865e+02	0.0000	10871.0	16.84%	35503.3	13.16%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-119	-2.762e+02	0.0000	10008.0	15.50%	32428.6	12.02%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-119	-2.757e+02	0.0000	39858.0	61.74%	152959.7	56.71%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-119	-2.744e+02	0.0000	6929.0	10.73%	21107.5	7.83%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-117	-2.706e+02	0.0000	29131.0	45.12%	108232.4	40.13%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-117	-2.699e+02	0.0000	46853.0	72.57%	183231.5	67.94%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-116	-2.683e+02	0.0000	10677.0	16.54%	35075.1	13.00%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-115	-2.666e+02	0.0000	6817.0	10.56%	20805.3	7.71%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-114	-2.639e+02	0.0000	2268.0	3.51%	5246.9	1.95%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-113	-2.616e+02	0.0000	891.0	1.38%	1326.9	0.49%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-111	-2.574e+02	0.0000	2004.0	3.10%	4475.3	1.66%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-111	-2.563e+02	0.0000	4788.0	7.42%	13712.8	5.08%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-110	-2.550e+02	0.0000	6301.0	9.76%	19097.6	7.08%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-110	-2.546e+02	0.0000	29601.0	45.85%	110574.4	41.00%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-109	-2.516e+02	0.0000	24629.0	38.15%	90327.8	33.49%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-108	-2.505e+02	0.0000	23473.0	36.36%	85676.6	31.77%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-105	-2.425e+02	0.0000	3652.0	5.66%	9944.9	3.69%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-105	-2.424e+02	0.0000	29385.0	45.52%	110004.8	40.79%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-104	-2.401e+02	0.0000	1722.0	2.67%	3728.3	1.38%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-104	-2.395e+02	0.0000	54421.0	84.30%	217534.3	80.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-103	-2.379e+02	0.0000	762.0	1.18%	1089.6	0.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-102	-2.367e+02	0.0000	1293.0	2.00%	2495.2	0.93%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-102	-2.350e+02	0.0000	2981.0	4.62%	7763.1	2.88%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-101	-2.332e+02	0.0000	3691.0	5.72%	10169.7	3.77%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-100	-2.321e+02	0.0000	2254.0	3.49%	5426.7	2.01%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-99	-2.299e+02	0.0000	4648.0	7.20%	13523.9	5.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-97	-2.244e+02	0.0000	21212.0	32.86%	77217.7	28.63%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-94	-2.177e+02	0.0000	3880.0	6.01%	10981.4	4.07%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-93	-2.164e+02	0.0000	440.0	0.68%	431.8	0.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-93	-2.163e+02	0.0000	3614.0	5.60%	10079.0	3.74%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-93	-2.159e+02	0.0000	8398.0	13.01%	27393.2	10.16%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-93	-2.158e+02	0.0000	1319.0	2.04%	2676.9	0.99%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-93	-2.158e+02	0.0000	1319.0	2.04%	2676.9	0.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-92	-2.119e+02	0.0000	21500.0	33.30%	78695.2	29.18%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-91	-2.098e+02	0.0000	25308.0	39.20%	94179.2	34.92%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-90	-2.088e+02	0.0000	850.0	1.32%	1411.9	0.52%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-89	-2.066e+02	0.0000	12097.0	18.74%	41657.5	15.44%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-89	-2.054e+02	0.0000	1182.0	1.83%	2337.0	0.87%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-87	-2.020e+02	0.0000	4527.0	7.01%	13432.7	4.98%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-87	-2.010e+02	0.0000	3556.0	5.51%	10042.9	3.72%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-86	-2.002e+02	0.0000	897.0	1.39%	1571.0	0.58%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-86	-1.996e+02	0.0000	1020.0	1.58%	1908.3	0.71%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-86	-1.992e+02	0.0000	13775.0	21.34%	48338.5	17.92%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-85	-1.967e+02	0.0000	3599.0	5.57%	10238.4	3.80%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-85	-1.958e+02	0.0000	1194.0	1.85%	2421.0	0.90%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-84	-1.957e+02	0.0000	13537.0	20.97%	47489.2	17.61%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-83	-1.917e+02	0.0000	5985.0	9.27%	18837.9	6.98%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-81	-1.886e+02	0.0000	2477.0	3.84%	6505.0	2.41%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-80	-1.850e+02	0.0000	6003.0	9.30%	19006.8	7.05%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-79	-1.833e+02	0.0000	1536.0	2.38%	3519.9	1.31%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-78	-1.805e+02	0.0000	6368.0	9.86%	20423.7	7.57%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-78	-1.804e+02	0.0000	4163.0	6.45%	12412.4	4.60%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-77	-1.787e+02	0.0000	33008.0	51.13%	126854.4	47.03%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-77	-1.781e+02	0.0000	1202.0	1.86%	2541.6	0.94%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-75	-1.741e+02	0.0000	23604.0	36.56%	88263.2	32.72%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-75	-1.730e+02	0.0000	39179.0	60.69%	152965.2	56.71%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-74	-1.726e+02	0.0000	3562.0	5.52%	10385.7	3.85%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-74	-1.725e+02	0.0000	10856.0	16.82%	37592.0	13.94%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-74	-1.713e+02	0.0000	7662.0	11.87%	25415.2	9.42%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-74	-1.707e+02	0.0000	28872.0	44.72%	109953.2	40.77%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-73	-1.698e+02	0.0000	926.0	1.43%	1788.0	0.66%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-72	-1.662e+02	0.0000	10901.0	16.89%	37904.4	14.05%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-71	-1.642e+02	0.0000	1931.0	2.99%	4919.0	1.82%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-71	-1.637e+02	0.0000	14971.0	23.19%	53902.0	19.98%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-69	-1.608e+02	0.0000	866.0	1.34%	1662.5	0.62%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-69	-1.597e+02	0.0000	2234.0	3.46%	5960.1	2.21%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-68	-1.575e+02	0.0000	4569.0	7.08%	14182.9	5.26%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-67	-1.564e+02	0.0000	28378.0	43.96%	108376.2	40.18%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-67	-1.563e+02	0.0000	6882.0	10.66%	22757.6	8.44%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-67	-1.559e+02	0.0000	9646.0	14.94%	33285.9	12.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-67	-1.550e+02	0.0000	2712.0	4.20%	7630.5	2.83%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-66	-1.536e+02	0.0000	2995.0	4.64%	8626.8	3.20%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-65	-1.510e+02	0.0000	732.0	1.13%	1336.9	0.50%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-64	-1.496e+02	0.0000	4625.0	7.16%	14503.3	5.38%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-64	-1.496e+02	0.0000	940.0	1.46%	1931.7	0.72%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-63	-1.460e+02	0.0000	9312.0	14.42%	32219.9	11.95%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-63	-1.458e+02	0.0000	1104.0	1.71%	2440.3	0.90%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-63	-1.455e+02	0.0000	2424.0	3.75%	6744.8	2.50%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-63	-1.452e+02	0.0000	19408.0	30.06%	72151.0	26.75%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-61	-1.415e+02	0.0000	4563.0	7.07%	14401.1	5.34%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-61	-1.408e+02	0.0000	28051.0	43.45%	107556.0	39.88%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-61	-1.408e+02	0.0000	2215.0	3.43%	6081.5	2.25%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-60	-1.388e+02	0.0000	2182.0	3.38%	5989.2	2.22%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-59	-1.379e+02	0.0000	12183.0	18.87%	43588.1	16.16%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-57	-1.331e+02	0.0000	14863.0	23.02%	54314.0	20.14%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-56	-1.302e+02	0.0000	3571.0	5.53%	10967.9	4.07%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-54	-1.258e+02	0.0000	1730.0	2.68%	4595.3	1.70%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-54	-1.254e+02	0.0000	2911.0	4.51%	8674.8	3.22%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-54	-1.251e+02	0.0000	3875.0	6.00%	12143.4	4.50%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-53	-1.227e+02	0.0000	855.0	1.32%	1833.9	0.68%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-52	-1.202e+02	0.0000	2125.0	3.29%	5990.4	2.22%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-52	-1.199e+02	0.0000	16931.0	26.23%	62986.1	23.35%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-51	-1.187e+02	0.0000	582.0	0.90%	1071.0	0.40%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-50	-1.153e+02	0.0000	15459.0	23.95%	57231.9	21.22%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-49	-1.140e+02	0.0000	5900.0	9.14%	19869.0	7.37%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-49	-1.131e+02	0.0000	3475.0	5.38%	10872.9	4.03%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-48	-1.127e+02	0.0000	275.0	0.43%	322.9	0.12%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-48	-1.122e+02	0.0000	19142.0	29.65%	72159.1	26.75%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-48	-1.116e+02	0.0000	10283.0	15.93%	36836.0	13.66%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-47	-1.095e+02	0.0000	2080.0	3.22%	5955.5	2.21%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-47	-1.091e+02	0.0000	3688.0	5.71%	11711.0	4.34%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-47	-1.087e+02	0.0000	14690.0	22.75%	54369.2	20.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-46	-1.077e+02	0.0000	1547.0	2.40%	4155.7	1.54%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-46	-1.073e+02	0.0000	2392.0	3.71%	7071.5	2.62%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-45	-1.059e+02	0.0000	2378.0	3.68%	7040.9	2.61%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e-45	-1.056e+02	0.0000	1144.0	1.77%	2848.8	1.06%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-45	-1.039e+02	0.0000	2473.0	3.83%	7401.0	2.74%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-44	-1.035e+02	0.0000	2107.0	3.26%	6119.6	2.27%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-44	-1.031e+02	0.0000	100.0	0.15%	30.0	0.01%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-44	-1.016e+02	0.0000	6437.0	9.97%	22178.4	8.22%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-43	-9.986e+01	0.0000	4929.0	7.63%	16489.8	6.11%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-43	-9.966e+01	0.0000	4959.0	7.68%	16606.4	6.16%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-43	-9.932e+01	0.0000	567.0	0.88%	1121.8	0.42%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-42	-9.839e+01	0.0000	21078.0	32.65%	80533.3	29.86%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-41	-9.642e+01	0.0000	10602.0	16.42%	38521.6	14.28%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-41	-9.618e+01	0.0000	1434.0	2.22%	3888.7	1.44%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-41	-9.491e+01	0.0000	13754.0	21.30%	51085.2	18.94%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-40	-9.296e+01	0.0000	3459.0	5.36%	11137.8	4.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-40	-9.272e+01	0.0000	1563.0	2.42%	4361.8	1.62%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-39	-9.006e+01	0.0000	4522.0	7.00%	15153.4	5.62%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-39	-8.992e+01	0.0000	3877.0	6.01%	12740.8	4.72%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-38	-8.911e+01	0.0000	1389.0	2.15%	3807.4	1.41%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-38	-8.863e+01	0.0000	430.0	0.67%	789.5	0.29%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-38	-8.776e+01	0.0000	1798.0	2.79%	5229.7	1.94%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-37	-8.675e+01	0.0000	828.0	1.28%	1986.2	0.74%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-37	-8.608e+01	0.0000	20738.0	32.12%	79641.1	29.53%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-37	-8.559e+01	0.0000	24054.0	37.26%	93238.4	34.57%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-37	-8.524e+01	0.0000	175.0	0.27%	177.0	0.07%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-36	-8.491e+01	0.0000	14034.0	21.74%	52555.5	19.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-36	-8.466e+01	0.0000	8353.0	12.94%	30030.6	11.13%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-36	-8.331e+01	0.0000	10545.0	16.33%	38702.7	14.35%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-36	-8.315e+01	0.0000	7450.0	11.54%	26548.1	9.84%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-35	-8.288e+01	0.0000	703.0	1.09%	1623.4	0.60%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-35	-8.240e+01	0.0000	596.0	0.92%	1300.5	0.48%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-35	-8.146e+01	0.0000	1452.0	2.25%	4103.3	1.52%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-34	-7.972e+01	0.0000	3338.0	5.17%	10923.3	4.05%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e-34	-7.918e+01	0.0000	1658.0	2.57%	4844.3	1.80%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-34	-7.866e+01	0.0000	505.0	0.78%	1052.1	0.39%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-34	-7.849e+01	0.0000	424.0	0.66%	820.7	0.30%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-33	-7.669e+01	0.0000	189.0	0.29%	225.6	0.08%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-33	-7.656e+01	0.0000	434.0	0.67%	858.6	0.32%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-33	-7.644e+01	0.0000	970.0	1.50%	2528.7	0.94%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-31	-7.272e+01	0.0000	12300.0	19.05%	46056.7	17.08%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-31	-7.253e+01	0.0000	3870.0	5.99%	13056.6	4.84%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-30	-6.984e+01	0.0000	9524.0	14.75%	35103.5	13.02%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-29	-6.900e+01	0.0000	5600.0	8.67%	19752.4	7.32%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-29	-6.846e+01	0.0000	508.0	0.79%	1121.3	0.42%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-29	-6.715e+01	0.0000	4409.0	6.83%	15222.1	5.64%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-29	-6.686e+01	0.0000	270.0	0.42%	452.1	0.17%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-28	-6.618e+01	0.0000	18111.0	28.05%	69799.1	25.88%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-28	-6.586e+01	0.0000	10458.0	16.20%	38954.7	14.44%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-28	-6.566e+01	0.0000	1831.0	2.84%	5638.1	2.09%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-28	-6.497e+01	0.0000	763.0	1.18%	1950.5	0.72%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-27	-6.439e+01	0.0000	5905.0	9.15%	21059.4	7.81%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-27	-6.271e+01	0.0000	1884.0	2.92%	5873.8	2.18%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-26	-6.122e+01	0.0000	432.0	0.67%	937.1	0.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-26	-6.092e+01	0.0000	7894.0	12.23%	28958.5	10.74%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-25	-5.985e+01	0.0000	11083.0	17.17%	41678.4	15.45%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-25	-5.962e+01	0.0000	2046.0	3.17%	6511.6	2.41%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-25	-5.954e+01	0.0000	7503.0	11.62%	27462.8	10.18%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-25	-5.887e+01	0.0000	88.0	0.14%	62.8	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-25	-5.846e+01	0.0000	62.0	0.10%	24.8	0.01%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-25	-5.839e+01	0.0000	2552.0	3.95%	8399.7	3.11%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-24	-5.689e+01	0.0000	16938.0	26.24%	65459.6	24.27%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-24	-5.642e+01	0.0000	1921.0	2.98%	6107.6	2.26%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-24	-5.640e+01	0.0000	8036.0	12.45%	29674.7	11.00%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-24	-5.618e+01	0.0000	2898.0	4.49%	9737.3	3.61%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-24	-5.585e+01	0.0000	19813.0	30.69%	77248.0	28.64%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-23	-5.463e+01	0.0000	840.0	1.30%	2302.8	0.85%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-22	-5.283e+01	0.0000	2242.0	3.47%	7352.5	2.73%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-22	-5.120e+01	0.0000	290.0	0.45%	577.1	0.21%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-21	-4.993e+01	0.0000	931.0	1.44%	2664.5	0.99%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-21	-4.988e+01	0.0000	7545.0	11.69%	27963.2	10.37%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-20	-4.820e+01	0.0000	837.0	1.30%	2360.9	0.88%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-20	-4.817e+01	0.0000	7771.0	12.04%	28923.5	10.72%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-20	-4.734e+01	0.0000	160.0	0.25%	243.2	0.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-19	-4.528e+01	0.0000	1070.0	1.66%	3208.1	1.19%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-18	-4.277e+01	0.0000	6720.0	10.41%	24957.6	9.25%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-18	-4.265e+01	0.0000	2435.0	3.77%	8282.8	3.07%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-18	-4.237e+01	0.0000	315.0	0.49%	701.2	0.26%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-18	-4.223e+01	0.0000	8705.0	13.48%	32885.8	12.19%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-18	-4.197e+01	0.0000	10052.0	15.57%	38300.5	14.20%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-17	-4.130e+01	0.0000	15243.0	23.61%	59357.1	22.01%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-17	-4.010e+01	0.0000	5234.0	8.11%	19186.6	7.11%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-17	-4.003e+01	0.0000	355.0	0.55%	840.4	0.31%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-17	-4.002e+01	0.0000	4295.0	6.65%	15510.1	5.75%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-16	-3.880e+01	0.0000	432.0	0.67%	1095.8	0.41%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-16	-3.876e+01	0.0000	3805.0	5.89%	13641.9	5.06%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-16	-3.852e+01	0.0000	1222.0	1.89%	3852.0	1.43%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-16	-3.842e+01	0.0000	4135.0	6.40%	14937.0	5.54%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-16	-3.772e+01	0.0000	12242.0	18.96%	47354.0	17.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-16	-3.763e+01	0.0000	595.0	0.92%	1648.7	0.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-16	-3.761e+01	0.0000	3576.0	5.54%	12786.8	4.74%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-15	-3.581e+01	0.0000	315.0	0.49%	745.1	0.28%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-14	-3.388e+01	0.0000	11777.0	18.24%	45675.3	16.93%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-14	-3.353e+01	0.0000	118.0	0.18%	186.5	0.07%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-14	-3.316e+01	0.0000	4934.0	7.64%	18252.4	6.77%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-14	-3.302e+01	0.0000	15583.0	24.14%	61230.1	22.70%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-14	-3.234e+01	0.0000	7549.0	11.69%	28696.1	10.64%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-13	-3.214e+01	0.0000	13593.0	21.06%	53160.1	19.71%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-13	-3.093e+01	0.0000	10217.0	15.83%	39516.3	14.65%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-13	-3.009e+01	0.0000	73.0	0.11%	89.3	0.03%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-12	-2.825e+01	0.0000	12347.0	19.13%	48321.5	17.92%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-12	-2.813e+01	0.0000	18987.0	29.41%	75530.5	28.00%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-12	-2.779e+01	0.0000	516.0	0.80%	1486.3	0.55%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-11	-2.744e+01	0.0000	4504.0	6.98%	16771.9	6.22%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-11	-2.674e+01	0.0000	5201.0	8.06%	19568.0	7.26%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e-11	-2.662e+01	0.0000	638.0	0.99%	1929.6	0.72%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-11	-2.638e+01	0.0000	3847.0	5.96%	14216.4	5.27%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-11	-2.594e+01	0.0000	480.0	0.74%	1383.1	0.51%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-10	-2.517e+01	0.0000	3308.0	5.12%	12139.1	4.50%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-10	-2.502e+01	0.0000	7709.0	11.94%	29705.9	11.01%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-10	-2.324e+01	0.0000	4329.0	6.71%	16249.1	6.02%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-10	-2.313e+01	0.0000	5117.0	7.93%	19393.6	7.19%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-9	-2.246e+01	0.0000	919.0	1.42%	3018.5	1.12%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-9	-2.229e+01	0.0000	12166.0	18.84%	47976.9	17.79%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-9	-2.220e+01	0.0000	8536.0	13.22%	33209.9	12.31%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-9	-2.220e+01	0.0000	8536.0	13.22%	33209.9	12.31%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-9	-2.081e+01	0.0000	13497.0	20.91%	53530.4	19.85%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-8	-2.066e+01	0.0000	2015.0	3.12%	7238.1	2.68%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-8	-2.041e+01	0.0000	14238.0	22.05%	56600.0	20.99%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-8	-1.951e+01	0.0000	2385.0	3.69%	8718.7	3.23%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-8	-1.913e+01	0.0000	13326.0	20.64%	52959.8	19.64%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-8	-1.911e+01	0.0000	973.0	1.51%	3287.9	1.22%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-7	-1.791e+01	0.0000	6514.0	10.09%	25284.5	9.37%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-7	-1.721e+01	0.0000	1984.0	3.07%	7228.9	2.68%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-7	-1.718e+01	0.0000	9049.0	14.02%	35623.4	13.21%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-7	-1.690e+01	0.0000	162.0	0.25%	402.4	0.15%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-7	-1.685e+01	0.0000	3368.0	5.22%	12707.8	4.71%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-7	-1.657e+01	0.0000	8567.0	13.27%	33703.9	12.50%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-6	-1.602e+01	0.0000	583.0	0.90%	1895.5	0.70%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-6	-1.536e+01	0.0000	2008.0	3.11%	7387.8	2.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-6	-1.506e+01	0.0000	950.0	1.47%	3293.7	1.22%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-6	-1.462e+01	0.0000	10375.0	16.07%	41236.6	15.29%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-5	-1.381e+01	0.0000	600.0	0.93%	2000.2	0.74%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-5	-1.256e+01	0.0000	1571.0	2.43%	5773.2	2.14%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-5	-1.256e+01	0.0000	1571.0	2.43%	5773.2	2.14%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-4	-1.096e+01	0.0000	1131.0	1.75%	4107.2	1.52%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-4	-1.041e+01	0.0001	7838.0	12.14%	31214.6	11.57%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-4	-9.845e+00	0.0001	2796.0	4.33%	10768.0	3.99%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-4	-9.717e+00	0.0001	3629.0	5.62%	14133.9	5.24%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-4	-9.612e+00	0.0001	3857.0	5.97%	15062.3	5.58%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-4	-9.441e+00	0.0001	521.0	0.81%	1797.9	0.67%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-8.960e+00	0.0002	13964.0	21.63%	56570.8	20.97%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-3	-8.874e+00	0.0003	970.0	1.50%	3548.7	1.32%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-3	-8.245e+00	0.0005	13722.0	21.25%	55660.3	20.64%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-3	-8.042e+00	0.0006	9429.0	14.61%	37979.3	14.08%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.907e+00	0.0007	3095.0	4.79%	12092.7	4.48%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-3	-7.480e+00	0.0010	740.0	1.15%	2696.4	1.00%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-3	-7.356e+00	0.0011	891.0	1.38%	3292.7	1.22%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-2	-6.820e+00	0.0019	3699.0	5.73%	14623.9	5.42%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-2	-6.196e+00	0.0036	1229.0	1.90%	4681.9	1.74%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-2	-6.173e+00	0.0037	4261.0	6.60%	16970.5	6.29%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-2	-5.845e+00	0.0051	1821.0	2.82%	7077.4	2.62%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-5.505e+00	0.0071	9510.0	14.73%	38629.0	14.32%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-2	-5.056e+00	0.0112	6546.0	10.14%	26465.8	9.81%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-2	-4.991e+00	0.0119	1358.0	2.10%	5262.1	1.95%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-2	-4.976e+00	0.0121	1397.0	2.16%	5420.3	2.01%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-4.526e+00	0.0189	2959.0	4.58%	11800.1	4.38%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-1	-4.296e+00	0.0237	15916.0	24.65%	65371.8	24.24%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-3.731e+00	0.0416	1542.0	2.39%	6089.2	2.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.674e+00	0.0440	4844.0	7.50%	19632.8	7.28%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-1	-3.477e+00	0.0535	20645.0	31.98%	85221.6	31.60%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.411e+00	0.0570	297.0	0.46%	1097.4	0.41%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.332e+00	0.0617	178.0	0.28%	635.9	0.24%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-1	-3.250e+00	0.0668	794.0	1.23%	3090.1	1.15%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-1	-2.825e+00	0.1019	175.0	0.27%	637.8	0.24%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-1	-2.678e+00	0.1180	64552.0	99.99%	269660.9	99.98%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-1	-2.627e+00	0.1239	66.0	0.10%	222.7	0.08%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.503e+00	0.1401	6820.0	10.56%	27987.3	10.38%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-1	-2.376e+00	0.1587	7745.0	12.00%	31849.7	11.81%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.364e+00	0.1603	10587.0	16.40%	43654.6	16.19%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.794e+00	0.2832	15389.0	23.84%	63803.3	23.66%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.781e+00	0.2863	4821.0	7.47%	19842.6	7.36%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-1.614e+00	0.3376	1937.0	3.00%	7921.8	2.94%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-8.465e-01	0.7264	10422.0	16.14%	43462.0	16.11%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-8.109e-01	0.7515	63773.0	98.78%	266410.2	98.77%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-6.557e-01	0.8761	11152.0	17.27%	46610.8	17.28%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-6.427e-01	0.8861	3.0	0.00%	11.8	0.00%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-6.173e-01	0.9074	972.0	1.51%	4073.2	1.51%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.135e-01	0.9094	3439.0	5.33%	14393.1	5.34%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-5.775e-01	0.9411	46.0	0.07%	195.6	0.07%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.413e-01	0.9741	4982.0	7.72%	20877.1	7.74%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.735e-01	1.0000	11927.0	18.47%	49970.5	18.53%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-4.375e-01	1.0000	799.0	1.24%	3385.1	1.26%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-3.067e-01	1.0000	4839.0	7.50%	20411.6	7.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.166e-01	1.0000	3273.0	5.07%	13896.9	5.15%
 Ik-1	NHTTGGGAATRCC	1e0	-2.146e-01	1.0000	64559.0	100.00%	269714.6	100.00%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.954e-01	1.0000	8211.0	12.72%	34667.5	12.85%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.871e-01	1.0000	23300.0	36.09%	97881.8	36.29%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-1.296e-01	1.0000	23.0	0.04%	122.2	0.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.015e-01	1.0000	594.0	0.92%	2629.8	0.98%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-9.924e-02	1.0000	23415.0	36.27%	98568.7	36.55%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-9.804e-02	1.0000	3585.0	5.55%	15335.0	5.69%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-9.236e-02	1.0000	10599.0	16.42%	44872.4	16.64%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-8.726e-02	1.0000	1553.0	2.41%	6739.8	2.50%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-7.487e-02	1.0000	3.0	0.00%	25.2	0.01%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.937e-02	1.0000	12872.0	19.94%	54484.6	20.20%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-4.175e-02	1.0000	5594.0	8.66%	23951.8	8.88%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-4.059e-02	1.0000	1417.0	2.19%	6226.3	2.31%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-4.000e-02	1.0000	14719.0	22.80%	62366.6	23.12%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.540e-02	1.0000	9359.0	14.50%	39917.1	14.80%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-2.458e-02	1.0000	1654.0	2.56%	7282.1	2.70%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-2.137e-02	1.0000	4723.0	7.32%	20360.4	7.55%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.105e-02	1.0000	152.0	0.24%	756.5	0.28%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-2.079e-02	1.0000	155.0	0.24%	770.7	0.29%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-1.197e-02	1.0000	824.0	1.28%	3748.6	1.39%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-7.291e-03	1.0000	17.0	0.03%	125.6	0.05%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-6.376e-03	1.0000	2415.0	3.74%	10655.7	3.95%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.028e-03	1.0000	8672.0	13.43%	37247.8	13.81%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.342e-03	1.0000	21547.0	33.38%	91597.9	33.96%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.992e-03	1.0000	16427.0	25.44%	70115.0	26.00%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.739e-03	1.0000	21061.0	32.62%	89610.7	33.22%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.501e-03	1.0000	7866.0	12.18%	34018.5	12.61%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.192e-03	1.0000	32.0	0.05%	226.9	0.08%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.192e-03	1.0000	3679.0	5.70%	16213.1	6.01%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-9.780e-04	1.0000	10612.0	16.44%	45699.9	16.94%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-7.760e-04	1.0000	3676.0	5.69%	16236.3	6.02%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-6.610e-04	1.0000	16936.0	26.23%	72430.1	26.85%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-2.880e-04	1.0000	180.0	0.28%	983.7	0.36%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.470e-04	1.0000	10398.0	16.11%	45025.9	16.69%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.100e-04	1.0000	2967.0	4.60%	13327.9	4.94%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-5.300e-05	1.0000	1575.0	2.44%	7307.0	2.71%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.200e-05	1.0000	160.0	0.25%	918.2	0.34%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-4.900e-05	1.0000	7569.0	11.72%	33119.2	12.28%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-3.600e-05	1.0000	9383.0	14.53%	40869.1	15.15%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.100e-05	1.0000	513.0	0.79%	2597.1	0.96%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.000e-05	1.0000	1649.0	2.55%	7677.3	2.85%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-6.000e-06	1.0000	4208.0	6.52%	18885.9	7.00%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-5.000e-06	1.0000	123.0	0.19%	770.6	0.29%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.000e-06	1.0000	2519.0	3.90%	11565.2	4.29%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.000e-06	1.0000	1339.0	2.07%	6432.5	2.38%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.000e-06	1.0000	5751.0	8.91%	25675.1	9.52%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.000e-06	1.0000	4144.0	6.42%	18755.6	6.95%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-0.000e+00	1.0000	12726.0	19.71%	55495.7	20.58%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-0.000e+00	1.0000	4294.0	6.65%	19440.0	7.21%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-0.000e+00	1.0000	28011.0	43.39%	120015.7	44.50%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-0.000e+00	1.0000	12053.0	18.67%	52751.1	19.56%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-0.000e+00	1.0000	816.0	1.26%	4129.1	1.53%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-0.000e+00	1.0000	8221.0	12.73%	36475.0	13.52%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-0.000e+00	1.0000	14540.0	22.52%	63399.5	23.51%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	1288.0	2.00%	6309.8	2.34%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-0.000e+00	1.0000	5237.0	8.11%	23653.0	8.77%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	41275.0	63.93%	175514.8	65.07%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-0.000e+00	1.0000	12280.0	19.02%	54044.3	20.04%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-0.000e+00	1.0000	9435.0	14.61%	41909.9	15.54%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-0.000e+00	1.0000	64541.0	99.97%	269708.3	100.00%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-0.000e+00	1.0000	1368.0	2.12%	6781.6	2.51%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-0.000e+00	1.0000	4773.0	7.39%	21821.8	8.09%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-0.000e+00	1.0000	16778.0	25.99%	73226.1	27.15%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-0.000e+00	1.0000	261.0	0.40%	6030.4	2.24%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-0.000e+00	1.0000	4315.0	6.68%	19882.8	7.37%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-0.000e+00	1.0000	6082.0	9.42%	27644.0	10.25%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-0.000e+00	1.0000	5770.0	8.94%	32537.6	12.06%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-0.000e+00	1.0000	758.0	1.17%	14708.8	5.45%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-0.000e+00	1.0000	8172.0	12.66%	39427.0	14.62%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-0.000e+00	1.0000	1790.0	2.77%	26301.9	9.75%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-0.000e+00	1.0000	10817.0	16.76%	54755.1	20.30%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-0.000e+00	1.0000	10049.0	15.57%	50099.3	18.57%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	22267.0	34.49%	122491.9	45.42%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-0.000e+00	1.0000	3302.0	5.11%	16709.9	6.20%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-0.000e+00	1.0000	10839.0	16.79%	55332.1	20.52%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-0.000e+00	1.0000	1218.0	1.89%	21652.7	8.03%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-0.000e+00	1.0000	1409.0	2.18%	8413.7	3.12%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-0.000e+00	1.0000	5369.0	8.32%	27415.2	10.16%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-0.000e+00	1.0000	789.0	1.22%	7699.1	2.85%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-0.000e+00	1.0000	3455.0	5.35%	26327.9	9.76%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-0.000e+00	1.0000	9112.0	14.11%	106806.2	39.60%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-0.000e+00	1.0000	4842.0	7.50%	25732.6	9.54%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-0.000e+00	1.0000	6446.0	9.98%	31182.9	11.56%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-0.000e+00	1.0000	9058.0	14.03%	51329.0	19.03%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-0.000e+00	1.0000	2699.0	4.18%	30423.1	11.28%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-0.000e+00	1.0000	875.0	1.36%	15725.0	5.83%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-0.000e+00	1.0000	2842.0	4.40%	13670.1	5.07%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-0.000e+00	1.0000	16159.0	25.03%	83050.8	30.79%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-0.000e+00	1.0000	25100.0	38.88%	124960.3	46.33%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-0.000e+00	1.0000	19135.0	29.64%	166625.7	61.78%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-0.000e+00	1.0000	1753.0	2.72%	21365.1	7.92%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	5081.0	7.87%	35032.4	12.99%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	2678.0	4.15%	17503.4	6.49%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	38416.0	59.51%	186358.9	69.09%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	9507.0	14.73%	50141.2	18.59%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-0.000e+00	1.0000	688.0	1.07%	13459.6	4.99%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-0.000e+00	1.0000	10522.0	16.30%	49283.4	18.27%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-0.000e+00	1.0000	25879.0	40.09%	138965.5	51.52%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-0.000e+00	1.0000	537.0	0.83%	12951.0	4.80%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-0.000e+00	1.0000	74.0	0.11%	625.1	0.23%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	509.0	0.79%	4068.1	1.51%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-0.000e+00	1.0000	1724.0	2.67%	12541.5	4.65%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-0.000e+00	1.0000	3546.0	5.49%	41964.7	15.56%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-0.000e+00	1.0000	15124.0	23.43%	85930.9	31.86%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e0	-0.000e+00	1.0000	17127.0	26.53%	84337.6	31.27%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	2083.0	3.23%	11563.0	4.29%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-0.000e+00	1.0000	5274.0	8.17%	62199.0	23.06%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-0.000e+00	1.0000	25.0	0.04%	551.9	0.20%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-0.000e+00	1.0000	590.0	0.91%	11934.9	4.42%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-0.000e+00	1.0000	2048.0	3.17%	11634.2	4.31%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-0.000e+00	1.0000	15165.0	23.49%	74807.7	27.74%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-0.000e+00	1.0000	5710.0	8.84%	75626.7	28.04%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-0.000e+00	1.0000	11288.0	17.48%	58441.9	21.67%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	1287.0	1.99%	6453.9	2.39%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-0.000e+00	1.0000	9124.0	14.13%	47613.5	17.65%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-0.000e+00	1.0000	3992.0	6.18%	23661.1	8.77%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-0.000e+00	1.0000	417.0	0.65%	3293.3	1.22%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-0.000e+00	1.0000	21336.0	33.05%	109599.4	40.64%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	5094.0	7.89%	28735.9	10.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	11107.0	17.20%	78838.1	29.23%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	1142.0	1.77%	15224.6	5.64%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-0.000e+00	1.0000	4411.0	6.83%	37525.7	13.91%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-0.000e+00	1.0000	3699.0	5.73%	19305.0	7.16%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-0.000e+00	1.0000	2098.0	3.25%	19324.8	7.16%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-0.000e+00	1.0000	119.0	0.18%	4637.1	1.72%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-0.000e+00	1.0000	557.0	0.86%	6638.5	2.46%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-0.000e+00	1.0000	4974.0	7.70%	23375.8	8.67%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	6919.0	10.72%	77166.2	28.61%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-0.000e+00	1.0000	14038.0	21.74%	64439.8	23.89%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	7540.0	11.68%	54947.2	20.37%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-0.000e+00	1.0000	7955.0	12.32%	37525.8	13.91%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-0.000e+00	1.0000	27963.0	43.31%	136166.0	50.49%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-0.000e+00	1.0000	1861.0	2.88%	10559.4	3.92%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-0.000e+00	1.0000	28745.0	44.53%	134493.6	49.87%
SeqBias: CG bias	SSSSSSSSSS	1e0	-0.000e+00	1.0000	44314.0	68.64%	202650.1	75.13%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-0.000e+00	1.0000	17846.0	27.64%	87884.9	32.58%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-0.000e+00	1.0000	22179.0	34.35%	97835.8	36.27%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-0.000e+00	1.0000	6186.0	9.58%	29889.9	11.08%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-0.000e+00	1.0000	1096.0	1.70%	23093.5	8.56%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-0.000e+00	1.0000	1380.0	2.14%	27027.6	10.02%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-0.000e+00	1.0000	52.0	0.08%	1389.9	0.52%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-0.000e+00	1.0000	3435.0	5.32%	17203.1	6.38%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-0.000e+00	1.0000	20487.0	31.73%	97062.8	35.99%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-0.000e+00	1.0000	11659.0	18.06%	57671.3	21.38%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-0.000e+00	1.0000	2145.0	3.32%	39501.5	14.65%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-0.000e+00	1.0000	19217.0	29.77%	100010.5	37.08%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-0.000e+00	1.0000	6224.0	9.64%	29555.2	10.96%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-0.000e+00	1.0000	61791.0	95.71%	264016.3	97.89%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	896.0	1.39%	4718.2	1.75%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-0.000e+00	1.0000	1648.0	2.55%	30996.9	11.49%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-0.000e+00	1.0000	14979.0	23.20%	66792.6	24.76%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-0.000e+00	1.0000	239.0	0.37%	4051.1	1.50%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-0.000e+00	1.0000	9348.0	14.48%	100583.3	37.29%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-0.000e+00	1.0000	10055.0	15.57%	53603.0	19.87%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-0.000e+00	1.0000	7542.0	11.68%	33935.0	12.58%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-0.000e+00	1.0000	2408.0	3.73%	11841.4	4.39%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-0.000e+00	1.0000	32703.0	50.66%	140985.9	52.27%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-0.000e+00	1.0000	8527.0	13.21%	44332.4	16.44%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-0.000e+00	1.0000	3531.0	5.47%	42694.7	15.83%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-0.000e+00	1.0000	753.0	1.17%	6449.6	2.39%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-0.000e+00	1.0000	3994.0	6.19%	57471.3	21.31%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-0.000e+00	1.0000	13547.0	20.98%	74761.9	27.72%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-0.000e+00	1.0000	1814.0	2.81%	28095.2	10.42%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-0.000e+00	1.0000	14297.0	22.15%	63774.4	23.65%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-0.000e+00	1.0000	13288.0	20.58%	66962.3	24.83%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-0.000e+00	1.0000	3776.0	5.85%	18894.0	7.01%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-0.000e+00	1.0000	638.0	0.99%	6496.8	2.41%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	12570.0	19.47%	61978.3	22.98%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-0.000e+00	1.0000	2514.0	3.89%	12789.5	4.74%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-0.000e+00	1.0000	1221.0	1.89%	25557.1	9.48%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-0.000e+00	1.0000	20164.0	31.23%	89208.5	33.08%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-0.000e+00	1.0000	21614.0	33.48%	98554.5	36.54%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-0.000e+00	1.0000	3584.0	5.55%	31316.8	11.61%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-0.000e+00	1.0000	6315.0	9.78%	78630.3	29.15%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-0.000e+00	1.0000	1691.0	2.62%	8344.4	3.09%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-0.000e+00	1.0000	22469.0	34.80%	107506.3	39.86%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-0.000e+00	1.0000	14818.0	22.95%	69979.7	25.95%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-0.000e+00	1.0000	11464.0	17.76%	66207.9	24.55%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-0.000e+00	1.0000	19030.0	29.48%	85062.2	31.54%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-0.000e+00	1.0000	2283.0	3.54%	16297.9	6.04%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-0.000e+00	1.0000	19412.0	30.07%	98102.4	36.37%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-0.000e+00	1.0000	6704.0	10.38%	33408.4	12.39%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-0.000e+00	1.0000	2435.0	3.77%	18624.4	6.91%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-0.000e+00	1.0000	15425.0	23.89%	71934.0	26.67%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-0.000e+00	1.0000	3977.0	6.16%	49406.5	18.32%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-0.000e+00	1.0000	26525.0	41.09%	131553.5	48.77%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-0.000e+00	1.0000	10060.0	15.58%	72487.4	26.88%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-0.000e+00	1.0000	23293.0	36.08%	107737.9	39.95%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-0.000e+00	1.0000	13493.0	20.90%	66072.1	24.50%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-0.000e+00	1.0000	7095.0	10.99%	72818.7	27.00%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-0.000e+00	1.0000	333.0	0.52%	19233.0	7.13%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-0.000e+00	1.0000	7687.0	11.91%	39288.0	14.57%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-0.000e+00	1.0000	8443.0	13.08%	95702.0	35.48%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-0.000e+00	1.0000	3802.0	5.89%	18574.6	6.89%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-0.000e+00	1.0000	2419.0	3.75%	18070.2	6.70%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-0.000e+00	1.0000	11164.0	17.29%	87831.2	32.56%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-0.000e+00	1.0000	3005.0	4.65%	53053.0	19.67%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-0.000e+00	1.0000	18584.0	28.79%	83939.6	31.12%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-0.000e+00	1.0000	3367.0	5.22%	16264.1	6.03%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-0.000e+00	1.0000	5076.0	7.86%	37941.4	14.07%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-0.000e+00	1.0000	16299.0	25.25%	95000.2	35.22%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-0.000e+00	1.0000	17349.0	26.87%	92435.2	34.27%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-0.000e+00	1.0000	23239.0	36.00%	124418.0	46.13%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-0.000e+00	1.0000	2486.0	3.85%	27017.4	10.02%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-0.000e+00	1.0000	29543.0	45.76%	146533.2	54.33%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-0.000e+00	1.0000	4424.0	6.85%	43165.0	16.00%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-0.000e+00	1.0000	9605.0	14.88%	47234.8	17.51%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-0.000e+00	1.0000	408.0	0.63%	5429.2	2.01%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-0.000e+00	1.0000	45879.0	71.07%	197859.7	73.36%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-0.000e+00	1.0000	3489.0	5.40%	16950.8	6.28%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-0.000e+00	1.0000	23401.0	36.25%	118744.8	44.03%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-0.000e+00	1.0000	12752.0	19.75%	61327.5	22.74%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-0.000e+00	1.0000	2199.0	3.41%	11400.4	4.23%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-0.000e+00	1.0000	679.0	1.05%	9917.6	3.68%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-0.000e+00	1.0000	4245.0	6.58%	23472.0	8.70%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-0.000e+00	1.0000	562.0	0.87%	3871.1	1.44%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	3005.0	4.65%	22707.5	8.42%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-0.000e+00	1.0000	23132.0	35.83%	118125.1	43.80%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-0.000e+00	1.0000	1477.0	2.29%	22778.7	8.45%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-0.000e+00	1.0000	169.0	0.26%	1847.7	0.69%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-0.000e+00	1.0000	28832.0	44.66%	139330.2	51.66%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-0.000e+00	1.0000	2064.0	3.20%	36971.4	13.71%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-0.000e+00	1.0000	3237.0	5.01%	20002.6	7.42%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-0.000e+00	1.0000	5658.0	8.76%	28326.5	10.50%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-0.000e+00	1.0000	36804.0	57.01%	174764.8	64.80%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-0.000e+00	1.0000	9240.0	14.31%	49586.3	18.38%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-0.000e+00	1.0000	10135.0	15.70%	46105.4	17.09%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-0.000e+00	1.0000	1826.0	2.83%	32104.6	11.90%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-0.000e+00	1.0000	1992.0	3.09%	38572.4	14.30%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-0.000e+00	1.0000	1839.0	2.85%	17006.7	6.31%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-0.000e+00	1.0000	1884.0	2.92%	11392.8	4.22%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	20331.0	31.49%	91234.5	33.83%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-0.000e+00	1.0000	3351.0	5.19%	43418.8	16.10%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-0.000e+00	1.0000	18562.0	28.75%	86546.1	32.09%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-0.000e+00	1.0000	2331.0	3.61%	26702.6	9.90%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-0.000e+00	1.0000	3087.0	4.78%	16503.8	6.12%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	24878.0	38.54%	108122.6	40.09%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-0.000e+00	1.0000	1385.0	2.15%	24436.2	9.06%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-0.000e+00	1.0000	20816.0	32.24%	101962.2	37.80%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	9559.0	14.81%	50029.4	18.55%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-0.000e+00	1.0000	221.0	0.34%	2848.4	1.06%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-0.000e+00	1.0000	6690.0	10.36%	54381.7	20.16%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-0.000e+00	1.0000	11210.0	17.36%	50164.4	18.60%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-0.000e+00	1.0000	15577.0	24.13%	72454.6	26.86%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-0.000e+00	1.0000	7844.0	12.15%	35891.7	13.31%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-0.000e+00	1.0000	14658.0	22.70%	83488.8	30.95%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-0.000e+00	1.0000	4349.0	6.74%	43053.5	15.96%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-0.000e+00	1.0000	17430.0	27.00%	79954.3	29.64%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-0.000e+00	1.0000	834.0	1.29%	6320.7	2.34%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-0.000e+00	1.0000	27543.0	42.66%	143000.4	53.02%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-0.000e+00	1.0000	2694.0	4.17%	15186.2	5.63%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-0.000e+00	1.0000	1525.0	2.36%	9432.1	3.50%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-0.000e+00	1.0000	1823.0	2.82%	30078.7	11.15%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-0.000e+00	1.0000	14582.0	22.59%	65181.5	24.17%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-0.000e+00	1.0000	162.0	0.25%	2181.7	0.81%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-0.000e+00	1.0000	948.0	1.47%	17258.9	6.40%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-0.000e+00	1.0000	934.0	1.45%	17465.4	6.48%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-0.000e+00	1.0000	1893.0	2.93%	12813.1	4.75%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-0.000e+00	1.0000	3298.0	5.11%	16271.5	6.03%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-0.000e+00	1.0000	21892.0	33.91%	105186.6	39.00%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-0.000e+00	1.0000	809.0	1.25%	4881.0	1.81%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-0.000e+00	1.0000	31174.0	48.29%	138807.1	51.46%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-0.000e+00	1.0000	7603.0	11.78%	37855.6	14.04%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	3397.0	5.26%	18583.0	6.89%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-0.000e+00	1.0000	10058.0	15.58%	47456.8	17.60%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-0.000e+00	1.0000	3687.0	5.71%	34428.7	12.76%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-0.000e+00	1.0000	2470.0	3.83%	45818.1	16.99%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-0.000e+00	1.0000	1972.0	3.05%	14167.6	5.25%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-0.000e+00	1.0000	5271.0	8.16%	24595.0	9.12%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-0.000e+00	1.0000	4136.0	6.41%	31060.8	11.52%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-0.000e+00	1.0000	12163.0	18.84%	54938.5	20.37%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-0.000e+00	1.0000	1506.0	2.33%	29485.9	10.93%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-0.000e+00	1.0000	2486.0	3.85%	17658.4	6.55%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-0.000e+00	1.0000	2276.0	3.53%	11284.6	4.18%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-0.000e+00	1.0000	9276.0	14.37%	43581.8	16.16%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-0.000e+00	1.0000	31638.0	49.01%	140650.9	52.15%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-0.000e+00	1.0000	30165.0	46.72%	137511.2	50.98%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-0.000e+00	1.0000	2407.0	3.73%	12009.8	4.45%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	20491.0	31.74%	103202.3	38.26%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-0.000e+00	1.0000	768.0	1.19%	8155.5	3.02%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-0.000e+00	1.0000	6307.0	9.77%	31144.9	11.55%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	1340.0	2.08%	16662.2	6.18%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-0.000e+00	1.0000	12743.0	19.74%	57345.4	21.26%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-0.000e+00	1.0000	2045.0	3.17%	30585.6	11.34%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-0.000e+00	1.0000	23971.0	37.13%	129518.3	48.02%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-0.000e+00	1.0000	8394.0	13.00%	133186.3	49.38%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-0.000e+00	1.0000	2303.0	3.57%	13743.6	5.10%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	16418.0	25.43%	72663.5	26.94%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-0.000e+00	1.0000	13515.0	20.93%	74107.8	27.48%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	11676.0	18.09%	85403.7	31.66%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-0.000e+00	1.0000	2905.0	4.50%	16909.7	6.27%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	9726.0	15.07%	66886.0	24.80%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-0.000e+00	1.0000	5707.0	8.84%	32556.1	12.07%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-0.000e+00	1.0000	2388.0	3.70%	42949.6	15.92%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-0.000e+00	1.0000	10263.0	15.90%	51329.5	19.03%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-0.000e+00	1.0000	3880.0	6.01%	42544.7	15.77%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-0.000e+00	1.0000	35.0	0.05%	818.8	0.30%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-0.000e+00	1.0000	36447.0	56.46%	160821.7	59.63%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-0.000e+00	1.0000	1668.0	2.58%	11358.0	4.21%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-0.000e+00	1.0000	6191.0	9.59%	61626.9	22.85%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-0.000e+00	1.0000	11730.0	18.17%	56043.4	20.78%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-0.000e+00	1.0000	2557.0	3.96%	17770.4	6.59%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-0.000e+00	1.0000	1542.0	2.39%	25512.1	9.46%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-0.000e+00	1.0000	24336.0	37.70%	125571.3	46.56%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-0.000e+00	1.0000	3414.0	5.29%	17415.5	6.46%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	47163.0	73.05%	202723.1	75.16%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-0.000e+00	1.0000	18740.0	29.03%	85973.9	31.88%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-0.000e+00	1.0000	20514.0	31.78%	91876.6	34.06%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-0.000e+00	1.0000	14647.0	22.69%	70408.0	26.10%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	32778.0	50.77%	151503.3	56.17%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-0.000e+00	1.0000	18756.0	29.05%	84357.5	31.28%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-0.000e+00	1.0000	26108.0	40.44%	134479.4	49.86%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-0.000e+00	1.0000	28324.0	43.87%	132452.6	49.11%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-0.000e+00	1.0000	12567.0	19.47%	60255.8	22.34%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-0.000e+00	1.0000	14979.0	23.20%	71443.4	26.49%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	9456.0	14.65%	42990.6	15.94%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-0.000e+00	1.0000	36787.0	56.98%	169497.5	62.84%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-0.000e+00	1.0000	25297.0	39.18%	141101.3	52.31%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-0.000e+00	1.0000	2751.0	4.26%	48324.5	17.92%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	0.000e+00	1.0000	3327.0	5.15%	18198.4	6.75%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	0.000e+00	1.0000	7795.0	12.07%	58432.5	21.66%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	0.000e+00	1.0000	2545.0	3.94%	24193.9	8.97%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	0.000e+00	1.0000	13992.0	21.67%	67115.3	24.88%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	1816.0	2.81%	11528.5	4.27%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	0.000e+00	1.0000	1411.0	2.19%	25809.6	9.57%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	0.000e+00	1.0000	1625.0	2.52%	29078.0	10.78%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	0.000e+00	1.0000	2800.0	4.34%	49776.3	18.46%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	0.000e+00	1.0000	27410.0	42.46%	139583.9	51.75%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	9345.0	14.48%	69379.6	25.72%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	0.000e+00	1.0000	5263.0	8.15%	38708.4	14.35%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	0.000e+00	1.0000	22845.0	35.39%	110702.6	41.04%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	0.000e+00	1.0000	1121.0	1.74%	10681.7	3.96%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	20050.0	31.06%	95291.8	35.33%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	0.000e+00	1.0000	2351.0	3.64%	17727.6	6.57%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	0.000e+00	1.0000	1280.0	1.98%	22721.5	8.42%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	0.000e+00	1.0000	3600.0	5.58%	22283.4	8.26%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	0.000e+00	1.0000	9777.0	15.14%	48231.9	17.88%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	0.000e+00	1.0000	14650.0	22.69%	69067.8	25.61%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	0.000e+00	1.0000	152.0	0.24%	3552.6	1.32%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	0.000e+00	1.0000	11269.0	17.46%	60379.4	22.39%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	17836.0	27.63%	80078.5	29.69%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	0.000e+00	1.0000	7357.0	11.40%	34932.6	12.95%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	0.000e+00	1.0000	7927.0	12.28%	41463.6	15.37%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	0.000e+00	1.0000	2651.0	4.11%	12823.0	4.75%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	0.000e+00	1.0000	2460.0	3.81%	35495.8	13.16%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	0.000e+00	1.0000	12981.0	20.11%	61407.7	22.77%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	0.000e+00	1.0000	14262.0	22.09%	70700.0	26.21%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	0.000e+00	1.0000	3553.0	5.50%	63509.4	23.55%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	0.000e+00	1.0000	41179.0	63.79%	181939.0	67.46%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	0.000e+00	1.0000	17351.0	26.88%	100231.1	37.16%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	0.000e+00	1.0000	16783.0	26.00%	85344.0	31.64%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	0.000e+00	1.0000	8290.0	12.84%	71328.2	26.45%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	0.000e+00	1.0000	15435.0	23.91%	79094.0	29.33%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	0.000e+00	1.0000	3908.0	6.05%	55116.6	20.44%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	0.000e+00	1.0000	2184.0	3.38%	23723.6	8.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	0.000e+00	1.0000	1038.0	1.61%	7386.0	2.74%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	0.000e+00	1.0000	2617.0	4.05%	40045.1	14.85%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	25935.0	40.17%	114864.0	42.59%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	0.000e+00	1.0000	3659.0	5.67%	47951.0	17.78%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	0.000e+00	1.0000	1991.0	3.08%	30564.5	11.33%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	8422.0	13.05%	39884.3	14.79%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	0.000e+00	1.0000	1756.0	2.72%	20146.1	7.47%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	0.000e+00	1.0000	64376.0	99.72%	269343.3	99.86%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	0.000e+00	1.0000	11452.0	17.74%	52132.5	19.33%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	0.000e+00	1.0000	22932.0	35.52%	120128.7	44.54%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	0.000e+00	1.0000	857.0	1.33%	15391.8	5.71%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	598.0	0.93%	3363.7	1.25%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	0.000e+00	1.0000	13822.0	21.41%	80118.0	29.70%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	0.000e+00	1.0000	1354.0	2.10%	8391.8	3.11%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	160.0	0.25%	1828.3	0.68%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	0.000e+00	1.0000	4962.0	7.69%	24238.8	8.99%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	0.000e+00	1.0000	6373.0	9.87%	29202.8	10.83%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	0.000e+00	1.0000	13369.0	20.71%	63319.1	23.48%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	0.000e+00	1.0000	16414.0	25.42%	77140.0	28.60%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	0.000e+00	1.0000	5658.0	8.76%	47395.8	17.57%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	0.000e+00	1.0000	965.0	1.49%	5505.9	2.04%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	0.000e+00	1.0000	23375.0	36.21%	103425.8	38.35%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	0.000e+00	1.0000	512.0	0.79%	9359.5	3.47%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	0.000e+00	1.0000	2806.0	4.35%	14224.0	5.27%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	0.000e+00	1.0000	16780.0	25.99%	87767.2	32.54%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	0.000e+00	1.0000	30926.0	47.90%	144649.7	53.63%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	0.000e+00	1.0000	5744.0	8.90%	47951.4	17.78%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	0.000e+00	1.0000	6428.0	9.96%	67931.4	25.19%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	0.000e+00	1.0000	406.0	0.63%	8961.2	3.32%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	0.000e+00	1.0000	2990.0	4.63%	46190.0	17.13%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	0.000e+00	1.0000	818.0	1.27%	5538.3	2.05%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	0.000e+00	1.0000	5625.0	8.71%	25718.4	9.54%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	0.000e+00	1.0000	15259.0	23.64%	67957.0	25.20%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	0.000e+00	1.0000	10154.0	15.73%	75970.6	28.17%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	0.000e+00	1.0000	1028.0	1.59%	13861.7	5.14%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	0.000e+00	1.0000	9025.0	13.98%	42515.1	15.76%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	0.000e+00	1.0000	655.0	1.01%	13311.8	4.94%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	0.000e+00	1.0000	6012.0	9.31%	45669.2	16.93%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	0.000e+00	1.0000	6221.0	9.64%	38018.0	14.10%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	0.000e+00	1.0000	2331.0	3.61%	39041.7	14.48%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	0.000e+00	1.0000	11906.0	18.44%	56151.0	20.82%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	0.000e+00	1.0000	1234.0	1.91%	20012.7	7.42%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	64421.0	99.79%	269703.1	100.00%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	282.0	0.44%	2198.0	0.81%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	0.000e+00	1.0000	12878.0	19.95%	61184.9	22.68%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	0.000e+00	1.0000	48.0	0.07%	1584.7	0.59%