<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<fimo version="4.10.2" release="Thu Sep 03 15:00:54 2015 -0700">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>fimo --oc OUTPUT_fimo MA0007.3.meme MergedChipseq_peaks.fa</command-line>
<settings>
<setting name="output directory">OUTPUT_fimo</setting>
<setting name="MEME file name">MA0007.3.meme</setting>
<setting name="sequence file name">MergedChipseq_peaks.fa</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">false</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">100000</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">2</setting>
</settings>
<sequence-data num-sequences="64559" num-residues="28693739" />
<alphabet>nucleotide</alphabet>
<motif name="MA0007.3" width="17" best-possible-match="GGGAACACGGTGTACCC"/>
<background source="non-redundant database">
<value letter="A">0.275</value>
<value letter="C">0.225</value>
<value letter="G">0.225</value>
<value letter="T">0.275</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
