Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 570)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 49131)	% of Background Sequences with Motif
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-31	-7.217e+01	0.0000	154.0	27.02%	4765.7	9.70%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-24	-5.535e+01	0.0000	224.0	39.30%	10071.7	20.49%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-18	-4.150e+01	0.0000	188.0	32.98%	8684.6	17.67%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-15	-3.620e+01	0.0000	199.0	34.91%	9909.6	20.16%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-15	-3.579e+01	0.0000	251.0	44.04%	13783.5	28.05%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-11	-2.727e+01	0.0000	150.0	26.32%	7339.5	14.93%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-11	-2.678e+01	0.0000	224.0	39.30%	12756.3	25.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-11	-2.595e+01	0.0000	181.0	31.75%	9658.4	19.65%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-10	-2.502e+01	0.0000	192.0	33.68%	10567.8	21.50%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-10	-2.484e+01	0.0000	39.0	6.84%	937.2	1.91%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-10	-2.410e+01	0.0000	324.0	56.84%	21200.7	43.14%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-10	-2.409e+01	0.0000	188.0	32.98%	10383.8	21.13%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-10	-2.365e+01	0.0000	143.0	25.09%	7214.0	14.68%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-10	-2.309e+01	0.0000	75.0	13.16%	2888.7	5.88%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-9	-2.280e+01	0.0000	95.0	16.67%	4118.0	8.38%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-9	-2.278e+01	0.0000	82.0	14.39%	3323.0	6.76%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-9	-2.262e+01	0.0000	41.0	7.19%	1105.3	2.25%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-9	-2.201e+01	0.0000	203.0	35.61%	11766.0	23.94%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-9	-2.093e+01	0.0000	35.0	6.14%	891.7	1.81%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-8	-1.918e+01	0.0000	254.0	44.56%	16173.9	32.91%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-7	-1.809e+01	0.0000	45.0	7.89%	1506.6	3.07%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-7	-1.763e+01	0.0000	144.0	25.26%	7965.6	16.21%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-6	-1.568e+01	0.0000	92.0	16.14%	4562.9	9.28%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-6	-1.430e+01	0.0000	120.0	21.05%	6667.0	13.57%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.421e+01	0.0000	117.0	20.53%	6465.5	13.16%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-5	-1.365e+01	0.0000	372.0	65.26%	27251.7	55.45%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.351e+01	0.0000	451.0	79.12%	34570.7	70.34%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.157e+01	0.0001	149.0	26.14%	9222.5	18.77%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-1.067e+01	0.0004	88.0	15.44%	4872.8	9.91%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-4	-9.886e+00	0.0007	109.0	19.12%	6505.8	13.24%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-4	-9.805e+00	0.0008	92.0	16.14%	5278.3	10.74%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-4	-9.636e+00	0.0009	125.0	21.93%	7741.1	15.75%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-9.295e+00	0.0012	16.0	2.81%	446.5	0.91%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-3	-9.171e+00	0.0013	40.0	7.02%	1811.4	3.69%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-8.547e+00	0.0024	191.0	33.51%	13123.5	26.70%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-3	-7.877e+00	0.0046	91.0	15.96%	5508.9	11.21%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-3	-7.516e+00	0.0065	129.0	22.63%	8456.5	17.21%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.118e+00	0.0094	128.0	22.46%	8464.3	17.22%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-7.056e+00	0.0097	65.0	11.40%	3748.6	7.63%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2	-6.866e+00	0.0115	129.0	22.63%	8598.3	17.50%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.483e+00	0.0164	190.0	33.33%	13567.8	27.61%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2	-6.313e+00	0.0190	216.0	37.89%	15751.5	32.05%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-6.306e+00	0.0190	57.0	10.00%	3289.3	6.69%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-6.070e+00	0.0231	81.0	14.21%	5089.4	10.36%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-6.042e+00	0.0232	118.0	20.70%	7929.2	16.13%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-2	-5.788e+00	0.0293	236.0	41.40%	17577.9	35.77%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-5.708e+00	0.0311	230.0	40.35%	17101.9	34.80%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-2	-5.087e+00	0.0566	38.0	6.67%	2123.0	4.32%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.958e+00	0.0631	36.0	6.32%	2000.7	4.07%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.927e+00	0.0638	131.0	22.98%	9243.6	18.81%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-4.761e+00	0.0739	86.0	15.09%	5746.7	11.69%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-2	-4.704e+00	0.0767	12.0	2.11%	464.2	0.94%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-4.695e+00	0.0767	50.0	8.77%	3043.7	6.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-4.473e+00	0.0930	74.0	12.98%	4889.1	9.95%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-4.375e+00	0.1007	192.0	33.68%	14392.9	29.29%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-1	-4.245e+00	0.1127	77.0	13.51%	5173.7	10.53%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.074e+00	0.1313	122.0	21.40%	8774.3	17.85%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.953e+00	0.1456	64.0	11.23%	4241.9	8.63%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.903e+00	0.1504	78.0	13.68%	5335.6	10.86%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.860e+00	0.1544	13.0	2.28%	585.3	1.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.849e+00	0.1544	36.0	6.32%	2166.5	4.41%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-3.829e+00	0.1544	46.0	8.07%	2906.3	5.91%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.781e+00	0.1592	80.0	14.04%	5523.2	11.24%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.671e+00	0.1750	27.0	4.74%	1548.6	3.15%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.341e+00	0.2396	13.0	2.28%	631.4	1.28%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.287e+00	0.2491	135.0	23.68%	10097.3	20.55%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.087e+00	0.2998	86.0	15.09%	6199.5	12.61%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.062e+00	0.3027	105.0	18.42%	7736.5	15.74%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.060e+00	0.3027	109.0	19.12%	8061.2	16.40%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-3.025e+00	0.3053	69.0	12.11%	4867.8	9.90%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.971e+00	0.3176	11.0	1.93%	536.6	1.09%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-2.962e+00	0.3176	111.0	19.47%	8259.6	16.81%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-2.957e+00	0.3176	216.0	37.89%	16982.5	34.55%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.945e+00	0.3176	270.0	47.37%	21579.5	43.91%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.905e+00	0.3213	18.0	3.16%	1020.6	2.08%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.898e+00	0.3213	9.0	1.58%	414.3	0.84%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.813e+00	0.3430	81.0	14.21%	5887.8	11.98%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.797e+00	0.3441	111.0	19.47%	8321.6	16.93%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.763e+00	0.3515	29.0	5.09%	1843.7	3.75%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.754e+00	0.3515	237.0	41.58%	18861.2	38.38%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.742e+00	0.3515	53.0	9.30%	3688.6	7.51%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.728e+00	0.3515	34.0	5.96%	2226.7	4.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.699e+00	0.3567	38.0	6.67%	2537.9	5.16%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-2.563e+00	0.4039	88.0	15.44%	6538.8	13.30%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.548e+00	0.4050	29.0	5.09%	1885.8	3.84%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.531e+00	0.4072	32.0	5.61%	2116.5	4.31%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.506e+00	0.4126	5.0	0.88%	197.6	0.40%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.477e+00	0.4198	90.0	15.79%	6732.7	13.70%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.417e+00	0.4409	29.0	5.09%	1912.6	3.89%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-2.375e+00	0.4548	65.0	11.40%	4749.1	9.66%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-2.369e+00	0.4548	89.0	15.61%	6692.9	13.62%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-2.311e+00	0.4741	1.0	0.18%	9.5	0.02%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-2.300e+00	0.4743	47.0	8.25%	3339.3	6.79%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-2.287e+00	0.4757	146.0	25.61%	11434.5	23.27%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.283e+00	0.4757	65.0	11.40%	4780.2	9.73%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.214e+00	0.5007	80.0	14.04%	6019.3	12.25%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.195e+00	0.5049	132.0	23.16%	10312.6	20.98%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.188e+00	0.5049	44.0	7.72%	3134.8	6.38%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.172e+00	0.5062	66.0	11.58%	4899.4	9.97%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.126e+00	0.5252	8.0	1.40%	420.3	0.86%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.118e+00	0.5252	32.0	5.61%	2211.2	4.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.078e+00	0.5399	8.0	1.40%	425.3	0.87%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.072e+00	0.5399	34.0	5.96%	2379.9	4.84%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.050e+00	0.5449	57.0	10.00%	4216.3	8.58%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-2.008e+00	0.5627	164.0	28.77%	13089.6	26.63%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.002e+00	0.5627	18.0	3.16%	1162.6	2.37%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.994e+00	0.5627	19.0	3.33%	1239.9	2.52%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.982e+00	0.5627	42.0	7.37%	3036.8	6.18%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.977e+00	0.5627	14.0	2.46%	868.3	1.77%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.933e+00	0.5788	187.0	32.81%	15074.5	30.67%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.884e+00	0.6026	405.0	71.05%	33898.4	68.97%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.852e+00	0.6162	12.0	2.11%	740.8	1.51%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.792e+00	0.6485	36.0	6.32%	2615.4	5.32%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.739e+00	0.6782	13.0	2.28%	833.7	1.70%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.716e+00	0.6875	92.0	16.14%	7223.9	14.70%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.628e+00	0.7450	69.0	12.11%	5362.0	10.91%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.614e+00	0.7489	64.0	11.23%	4955.2	10.08%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.576e+00	0.7708	11.0	1.93%	710.2	1.45%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.526e+00	0.8040	37.0	6.49%	2781.6	5.66%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.523e+00	0.8040	19.0	3.33%	1340.7	2.73%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.501e+00	0.8108	397.0	69.65%	33453.7	68.07%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.477e+00	0.8235	41.0	7.19%	3124.6	6.36%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.470e+00	0.8235	55.0	9.65%	4276.2	8.70%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.426e+00	0.8522	31.0	5.44%	2328.1	4.74%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.413e+00	0.8569	47.0	8.25%	3641.7	7.41%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.407e+00	0.8569	57.0	10.00%	4469.8	9.09%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.372e+00	0.8790	34.0	5.96%	2591.2	5.27%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.359e+00	0.8830	98.0	17.19%	7918.5	16.11%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.354e+00	0.8830	38.0	6.67%	2926.0	5.95%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.297e+00	0.9248	13.0	2.28%	919.7	1.87%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.270e+00	0.9436	40.0	7.02%	3123.6	6.36%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.263e+00	0.9436	16.0	2.81%	1166.2	2.37%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.263e+00	0.9436	6.0	1.05%	382.0	0.78%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.254e+00	0.9436	31.0	5.44%	2388.9	4.86%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.246e+00	0.9436	76.0	13.33%	6136.5	12.49%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.224e+00	0.9511	12.0	2.11%	856.4	1.74%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.209e+00	0.9589	106.0	18.60%	8688.7	17.68%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.171e+00	0.9883	124.0	21.75%	10240.3	20.84%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.165e+00	0.9883	17.0	2.98%	1273.6	2.59%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.152e+00	0.9929	43.0	7.54%	3423.4	6.97%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.145e+00	0.9929	60.0	10.53%	4849.3	9.87%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.125e+00	1.0000	23.0	4.04%	1776.1	3.61%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.125e+00	1.0000	16.0	2.81%	1203.6	2.45%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.124e+00	1.0000	28.0	4.91%	2189.8	4.46%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.123e+00	1.0000	158.0	27.72%	13172.4	26.80%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.117e+00	1.0000	139.0	24.39%	11557.1	23.52%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.109e+00	1.0000	146.0	25.61%	12160.4	24.74%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.108e+00	1.0000	120.0	21.05%	9948.0	20.24%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.092e+00	1.0000	13.0	2.28%	968.7	1.97%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.088e+00	1.0000	49.0	8.60%	3956.3	8.05%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.078e+00	1.0000	88.0	15.44%	7252.7	14.76%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.032e+00	1.0000	96.0	16.84%	7963.2	16.20%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.026e+00	1.0000	46.0	8.07%	3736.8	7.60%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.023e+00	1.0000	98.0	17.19%	8140.3	16.56%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.017e+00	1.0000	178.0	31.23%	14974.3	30.47%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-1.011e+00	1.0000	37.0	6.49%	2987.7	6.08%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.927e-01	1.0000	14.0	2.46%	1077.8	2.19%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.737e-01	1.0000	13.0	2.28%	1000.1	2.03%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-9.615e-01	1.0000	16.0	2.81%	1252.1	2.55%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-9.505e-01	1.0000	93.0	16.32%	7768.2	15.81%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-9.502e-01	1.0000	187.0	32.81%	15808.9	32.17%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.465e-01	1.0000	88.0	15.44%	7345.5	14.95%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-9.445e-01	1.0000	76.0	13.33%	6325.6	12.87%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.403e-01	1.0000	36.0	6.32%	2937.9	5.98%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-9.396e-01	1.0000	31.0	5.44%	2516.5	5.12%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-9.155e-01	1.0000	45.0	7.89%	3711.5	7.55%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.101e-01	1.0000	34.0	5.96%	2783.7	5.66%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-9.098e-01	1.0000	39.0	6.84%	3206.8	6.52%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.071e-01	1.0000	33.0	5.79%	2701.0	5.50%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-8.928e-01	1.0000	2.0	0.35%	121.5	0.25%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-8.787e-01	1.0000	30.0	5.26%	2460.8	5.01%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-8.745e-01	1.0000	16.0	2.81%	1281.8	2.61%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.699e-01	1.0000	189.0	33.16%	16060.2	32.68%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-8.563e-01	1.0000	180.0	31.58%	15301.9	31.14%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-8.508e-01	1.0000	161.0	28.25%	13675.7	27.83%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.486e-01	1.0000	73.0	12.81%	6138.0	12.49%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.398e-01	1.0000	222.0	38.95%	18929.4	38.52%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-8.337e-01	1.0000	54.0	9.47%	4526.0	9.21%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-8.125e-01	1.0000	8.0	1.40%	628.7	1.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.009e-01	1.0000	8.0	1.40%	631.8	1.29%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.847e-01	1.0000	65.0	11.40%	5501.6	11.19%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.842e-01	1.0000	101.0	17.72%	8589.4	17.48%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.841e-01	1.0000	7.0	1.23%	551.2	1.12%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-7.570e-01	1.0000	59.0	10.35%	5007.8	10.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-7.448e-01	1.0000	29.0	5.09%	2442.2	4.97%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.411e-01	1.0000	43.0	7.54%	3645.2	7.42%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.339e-01	1.0000	17.0	2.98%	1419.9	2.89%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-7.336e-01	1.0000	185.0	32.46%	15865.4	32.28%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-7.308e-01	1.0000	50.0	8.77%	4253.5	8.65%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.299e-01	1.0000	13.0	2.28%	1078.5	2.19%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.259e-01	1.0000	1.0	0.18%	57.4	0.12%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.126e-01	1.0000	54.0	9.47%	4610.7	9.38%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-6.994e-01	1.0000	31.0	5.44%	2639.2	5.37%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.900e-01	1.0000	1.0	0.18%	60.6	0.12%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.897e-01	1.0000	23.0	4.04%	1955.2	3.98%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.829e-01	1.0000	57.0	10.00%	4891.4	9.95%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.737e-01	1.0000	28.0	4.91%	2395.3	4.87%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.716e-01	1.0000	101.0	17.72%	8696.9	17.70%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-6.698e-01	1.0000	18.0	3.16%	1533.8	3.12%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-6.554e-01	1.0000	60.0	10.53%	5172.7	10.53%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-6.553e-01	1.0000	73.0	12.81%	6295.4	12.81%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.477e-01	1.0000	15.0	2.63%	1283.8	2.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.459e-01	1.0000	56.0	9.82%	4834.1	9.84%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.450e-01	1.0000	112.0	19.65%	9673.6	19.68%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.435e-01	1.0000	86.0	15.09%	7429.5	15.12%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.407e-01	1.0000	21.0	3.68%	1807.1	3.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.396e-01	1.0000	393.0	68.95%	33902.9	68.98%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.359e-01	1.0000	11.0	1.93%	940.3	1.91%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.353e-01	1.0000	25.0	4.39%	2157.1	4.39%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.299e-01	1.0000	3.0	0.53%	242.2	0.49%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.262e-01	1.0000	247.0	43.33%	21344.5	43.43%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-6.210e-01	1.0000	4.0	0.70%	332.1	0.68%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.186e-01	1.0000	65.0	11.40%	5636.2	11.47%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.158e-01	1.0000	8.0	1.40%	685.8	1.40%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-6.128e-01	1.0000	212.0	37.19%	18344.7	37.33%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.074e-01	1.0000	13.0	2.28%	1126.1	2.29%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-6.069e-01	1.0000	104.0	18.25%	9023.4	18.36%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-6.067e-01	1.0000	8.0	1.40%	688.2	1.40%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-5.974e-01	1.0000	7.0	1.23%	603.7	1.23%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-5.801e-01	1.0000	17.0	2.98%	1489.6	3.03%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-5.749e-01	1.0000	182.0	31.93%	15806.1	32.16%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-5.734e-01	1.0000	266.0	46.67%	23057.4	46.92%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-5.610e-01	1.0000	27.0	4.74%	2376.9	4.84%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.604e-01	1.0000	413.0	72.46%	35724.9	72.69%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-5.526e-01	1.0000	110.0	19.30%	9605.9	19.55%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.484e-01	1.0000	93.0	16.32%	8136.0	16.55%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.468e-01	1.0000	9.0	1.58%	798.1	1.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-5.451e-01	1.0000	84.0	14.74%	7357.8	14.97%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.439e-01	1.0000	8.0	1.40%	710.2	1.45%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-5.430e-01	1.0000	26.0	4.56%	2300.8	4.68%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.412e-01	1.0000	8.0	1.40%	711.4	1.45%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-5.371e-01	1.0000	7.0	1.23%	623.0	1.27%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.365e-01	1.0000	120.0	21.05%	10493.0	21.35%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.322e-01	1.0000	11.0	1.93%	982.2	2.00%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.291e-01	1.0000	22.0	3.86%	1957.3	3.98%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.253e-01	1.0000	43.0	7.54%	3803.1	7.74%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-5.179e-01	1.0000	158.0	27.72%	13810.8	28.10%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.104e-01	1.0000	1.0	0.18%	79.5	0.16%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.087e-01	1.0000	3.0	0.53%	268.8	0.55%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.000e-01	1.0000	133.0	23.33%	11668.8	23.74%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.997e-01	1.0000	9.0	1.58%	817.7	1.66%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-4.950e-01	1.0000	142.0	24.91%	12457.0	25.35%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.842e-01	1.0000	14.0	2.46%	1273.9	2.59%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.823e-01	1.0000	97.0	17.02%	8562.9	17.42%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.806e-01	1.0000	1.0	0.18%	83.8	0.17%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.787e-01	1.0000	9.0	1.58%	826.5	1.68%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-4.720e-01	1.0000	28.0	4.91%	2526.8	5.14%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.686e-01	1.0000	3.0	0.53%	278.1	0.57%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.674e-01	1.0000	2.0	0.35%	183.5	0.37%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.530e-01	1.0000	97.0	17.02%	8600.4	17.50%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-4.513e-01	1.0000	76.0	13.33%	6767.7	13.77%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.489e-01	1.0000	2.0	0.35%	187.7	0.38%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.479e-01	1.0000	159.0	27.89%	14003.0	28.49%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.429e-01	1.0000	31.0	5.44%	2815.3	5.73%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.426e-01	1.0000	14.0	2.46%	1296.4	2.64%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.423e-01	1.0000	52.0	9.12%	4671.9	9.51%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.387e-01	1.0000	131.0	22.98%	11583.6	23.57%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-4.362e-01	1.0000	109.0	19.12%	9670.8	19.68%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.346e-01	1.0000	82.0	14.39%	7313.4	14.88%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.273e-01	1.0000	1.0	0.18%	91.5	0.19%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-4.212e-01	1.0000	18.0	3.16%	1670.4	3.40%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-4.210e-01	1.0000	70.0	12.28%	6278.9	12.78%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.194e-01	1.0000	202.0	35.44%	17778.9	36.18%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-4.174e-01	1.0000	124.0	21.75%	11006.4	22.39%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-4.068e-01	1.0000	106.0	18.60%	9451.6	19.23%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-4.004e-01	1.0000	27.0	4.74%	2494.1	5.07%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.929e-01	1.0000	175.0	30.70%	15484.4	31.51%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.919e-01	1.0000	30.0	5.26%	2770.3	5.64%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.909e-01	1.0000	161.0	28.25%	14271.4	29.04%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-3.879e-01	1.0000	197.0	34.56%	17402.4	35.41%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.861e-01	1.0000	109.0	19.12%	9745.6	19.83%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.768e-01	1.0000	34.0	5.96%	3142.6	6.39%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.727e-01	1.0000	32.0	5.61%	2967.4	6.04%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.720e-01	1.0000	56.0	9.82%	5104.4	10.39%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.705e-01	1.0000	18.0	3.16%	1706.3	3.47%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.601e-01	1.0000	42.0	7.37%	3874.4	7.88%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.557e-01	1.0000	8.0	1.40%	793.5	1.61%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-3.490e-01	1.0000	22.0	3.86%	2087.1	4.25%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.345e-01	1.0000	63.0	11.05%	5774.6	11.75%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.298e-01	1.0000	11.0	1.93%	1090.6	2.22%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.165e-01	1.0000	91.0	15.96%	8278.1	16.84%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.149e-01	1.0000	331.0	58.07%	29114.4	59.24%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-3.146e-01	1.0000	71.0	12.46%	6513.9	13.25%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.111e-01	1.0000	5.0	0.88%	528.9	1.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.091e-01	1.0000	5.0	0.88%	529.5	1.08%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.026e-01	1.0000	310.0	54.39%	27339.9	55.63%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.974e-01	1.0000	52.0	9.12%	4847.9	9.86%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.921e-01	1.0000	211.0	37.02%	18816.8	38.29%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.877e-01	1.0000	16.0	2.81%	1589.8	3.23%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.859e-01	1.0000	74.0	12.98%	6826.5	13.89%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.800e-01	1.0000	7.0	1.23%	741.7	1.51%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.771e-01	1.0000	8.0	1.40%	840.8	1.71%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.725e-01	1.0000	15.0	2.63%	1509.2	3.07%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.672e-01	1.0000	130.0	22.81%	11806.7	24.02%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.664e-01	1.0000	233.0	40.88%	20786.7	42.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.535e-01	1.0000	5.0	0.88%	559.3	1.14%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.409e-01	1.0000	42.0	7.37%	4030.1	8.20%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.407e-01	1.0000	13.0	2.28%	1349.3	2.75%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.355e-01	1.0000	87.0	15.26%	8078.0	16.44%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.323e-01	1.0000	35.0	6.14%	3405.3	6.93%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.309e-01	1.0000	94.0	16.49%	8709.0	17.72%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.294e-01	1.0000	9.0	1.58%	973.4	1.98%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.271e-01	1.0000	12.0	2.11%	1266.2	2.58%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-2.240e-01	1.0000	222.0	38.95%	19947.6	40.59%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.235e-01	1.0000	3.0	0.53%	368.4	0.75%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.229e-01	1.0000	22.0	3.86%	2217.8	4.51%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.186e-01	1.0000	39.0	6.84%	3792.0	7.72%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.170e-01	1.0000	49.0	8.60%	4705.6	9.57%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.142e-01	1.0000	4.0	0.70%	480.6	0.98%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.126e-01	1.0000	169.0	29.65%	15362.5	31.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.121e-01	1.0000	308.0	54.04%	27406.0	55.76%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.116e-01	1.0000	16.0	2.81%	1665.3	3.39%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.112e-01	1.0000	105.0	18.42%	9731.9	19.80%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.096e-01	1.0000	79.0	13.86%	7420.8	15.10%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.047e-01	1.0000	43.0	7.54%	4181.3	8.51%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.974e-01	1.0000	86.0	15.09%	8074.3	16.43%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.960e-01	1.0000	252.0	44.21%	22633.0	46.05%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.956e-01	1.0000	6.0	1.05%	702.0	1.43%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.941e-01	1.0000	174.0	30.53%	15854.6	32.26%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.919e-01	1.0000	6.0	1.05%	704.6	1.43%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.883e-01	1.0000	21.0	3.68%	2169.2	4.41%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.876e-01	1.0000	1.0	0.18%	152.9	0.31%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.852e-01	1.0000	22.0	3.86%	2268.4	4.62%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.848e-01	1.0000	5.0	0.88%	606.1	1.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.772e-01	1.0000	68.0	11.93%	6507.2	13.24%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.709e-01	1.0000	49.0	8.60%	4796.3	9.76%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.700e-01	1.0000	158.0	27.72%	14528.7	29.56%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.685e-01	1.0000	29.0	5.09%	2953.4	6.01%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.656e-01	1.0000	5.0	0.88%	622.8	1.27%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.613e-01	1.0000	110.0	19.30%	10313.7	20.99%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.587e-01	1.0000	25.0	4.39%	2594.9	5.28%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.539e-01	1.0000	148.0	25.96%	13703.9	27.88%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.522e-01	1.0000	156.0	27.37%	14414.3	29.33%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.465e-01	1.0000	234.0	41.05%	21251.2	43.24%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.438e-01	1.0000	41.0	7.19%	4121.3	8.39%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.396e-01	1.0000	10.0	1.75%	1167.2	2.37%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.396e-01	1.0000	10.0	1.75%	1167.2	2.37%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.387e-01	1.0000	18.0	3.16%	1959.6	3.99%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.354e-01	1.0000	22.0	3.86%	2351.5	4.78%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.349e-01	1.0000	6.0	1.05%	759.8	1.55%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.346e-01	1.0000	96.0	16.84%	9149.9	18.62%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.309e-01	1.0000	317.0	55.61%	28470.7	57.93%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.243e-01	1.0000	70.0	12.28%	6836.6	13.91%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.182e-01	1.0000	55.0	9.65%	5483.9	11.16%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.160e-01	1.0000	17.0	2.98%	1903.1	3.87%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.122e-01	1.0000	139.0	24.39%	13072.8	26.60%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.100e-01	1.0000	9.0	1.58%	1108.7	2.26%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.090e-01	1.0000	14.0	2.46%	1619.6	3.30%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-1.019e-01	1.0000	33.0	5.79%	3479.7	7.08%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.002e-01	1.0000	40.0	7.02%	4145.0	8.43%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-9.617e-02	1.0000	242.0	42.46%	22184.1	45.14%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-9.452e-02	1.0000	10.0	1.75%	1239.4	2.52%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-9.158e-02	1.0000	221.0	38.77%	20385.8	41.48%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.023e-02	1.0000	309.0	54.21%	27991.8	56.96%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.006e-02	1.0000	247.0	43.33%	22653.1	46.09%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.947e-02	1.0000	21.0	3.68%	2357.8	4.80%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-8.923e-02	1.0000	3.0	0.53%	477.5	0.97%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-8.879e-02	1.0000	86.0	15.09%	8428.8	17.15%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-8.773e-02	1.0000	108.0	18.95%	10421.8	21.21%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-8.458e-02	1.0000	83.0	14.56%	8175.1	16.63%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.689e-02	1.0000	124.0	21.75%	11916.4	24.25%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.432e-02	1.0000	53.0	9.30%	5460.8	11.11%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.013e-02	1.0000	2.0	0.35%	376.9	0.77%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-6.721e-02	1.0000	179.0	31.40%	16864.3	34.31%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.715e-02	1.0000	99.0	17.37%	9723.6	19.78%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.429e-02	1.0000	183.0	32.11%	17238.3	35.08%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.334e-02	1.0000	46.0	8.07%	4854.8	9.88%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.048e-02	1.0000	127.0	22.28%	12293.0	25.01%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.511e-02	1.0000	72.0	12.63%	7329.5	14.91%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.325e-02	1.0000	92.0	16.14%	9179.2	18.68%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.990e-02	1.0000	6.0	1.05%	906.8	1.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.837e-02	1.0000	234.0	41.05%	21840.8	44.44%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.717e-02	1.0000	59.0	10.35%	6172.7	12.56%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-4.585e-02	1.0000	1.0	0.18%	267.2	0.54%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.350e-02	1.0000	10.0	1.75%	1374.8	2.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-4.306e-02	1.0000	71.0	12.46%	7323.1	14.90%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.854e-02	1.0000	263.0	46.14%	24461.1	49.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.839e-02	1.0000	27.0	4.74%	3153.5	6.42%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-3.790e-02	1.0000	41.0	7.19%	4527.5	9.21%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.737e-02	1.0000	109.0	19.12%	10866.4	22.11%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.721e-02	1.0000	89.0	15.61%	9039.8	18.39%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.706e-02	1.0000	7.0	1.23%	1064.5	2.17%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.706e-02	1.0000	7.0	1.23%	1064.5	2.17%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.533e-02	1.0000	46.0	8.07%	5028.9	10.23%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.246e-02	1.0000	143.0	25.09%	13992.8	28.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.241e-02	1.0000	34.0	5.96%	3887.2	7.91%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.230e-02	1.0000	64.0	11.23%	6764.4	13.76%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.216e-02	1.0000	92.0	16.14%	9368.1	19.06%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.168e-02	1.0000	49.0	8.60%	5347.9	10.88%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.962e-02	1.0000	5.0	0.88%	858.2	1.75%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.899e-02	1.0000	91.0	15.96%	9313.6	18.95%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.829e-02	1.0000	60.0	10.53%	6428.8	13.08%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.620e-02	1.0000	18.0	3.16%	2319.5	4.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.256e-02	1.0000	104.0	18.25%	10598.3	21.56%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.239e-02	1.0000	106.0	18.60%	10784.8	21.94%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.132e-02	1.0000	159.0	27.89%	15595.9	31.73%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.071e-02	1.0000	183.0	32.11%	17742.3	36.10%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.785e-02	1.0000	37.0	6.49%	4332.9	8.82%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.720e-02	1.0000	58.0	10.18%	6385.2	12.99%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.698e-02	1.0000	172.0	30.18%	16845.9	34.28%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.664e-02	1.0000	69.0	12.11%	7442.8	15.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.280e-02	1.0000	22.0	3.86%	2880.5	5.86%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.241e-02	1.0000	130.0	22.81%	13186.9	26.83%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.232e-02	1.0000	8.0	1.40%	1340.7	2.73%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.203e-02	1.0000	60.0	10.53%	6678.7	13.59%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.028e-02	1.0000	76.0	13.33%	8249.3	16.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-9.605e-03	1.0000	68.0	11.93%	7508.1	15.28%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.880e-03	1.0000	1.0	0.18%	406.6	0.83%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-8.326e-03	1.0000	43.0	7.54%	5113.8	10.41%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.117e-03	1.0000	17.0	2.98%	2429.6	4.94%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.378e-03	1.0000	14.0	2.46%	2112.0	4.30%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.343e-03	1.0000	57.0	10.00%	6521.1	13.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.983e-03	1.0000	37.0	6.49%	4552.9	9.26%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.848e-03	1.0000	76.0	13.33%	8367.1	17.02%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.543e-03	1.0000	20.0	3.51%	2824.3	5.75%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.849e-03	1.0000	51.0	8.95%	6037.4	12.28%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.904e-03	1.0000	1.0	0.18%	476.7	0.97%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.958e-03	1.0000	80.0	14.04%	9090.2	18.50%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.868e-03	1.0000	13.0	2.28%	2209.9	4.50%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.733e-03	1.0000	24.0	4.21%	3467.0	7.05%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.541e-03	1.0000	51.0	8.95%	6303.7	12.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.386e-03	1.0000	47.0	8.25%	5922.4	12.05%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.058e-03	1.0000	24.0	4.21%	3553.3	7.23%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-6.160e-04	1.0000	6.0	1.05%	1461.2	2.97%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.370e-04	1.0000	77.0	13.51%	9119.1	18.55%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.410e-04	1.0000	128.0	22.46%	14085.0	28.66%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-3.340e-04	1.0000	75.0	13.16%	9033.4	18.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.000e-04	1.0000	49.0	8.60%	6523.6	13.27%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.810e-04	1.0000	97.0	17.02%	11312.3	23.02%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.600e-05	1.0000	68.0	11.93%	8870.9	18.05%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.900e-05	1.0000	18.0	3.16%	3464.9	7.05%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.000e-06	1.0000	82.0	14.39%	10689.3	21.75%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	17.2	0.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	148.5	0.30%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	18.9	0.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	149.6	0.30%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	92.4	0.19%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	55.5	0.11%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	318.2	0.65%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	36.9	0.08%