while IFS=$'\t' read -r file motif gene
do
  echo "file=$file"
  echo "motif=$motif"
  echo "gene=$gene"

  findMotifsGenome.pl \
    "${file}.txt" mm10 "${file}" \
    -size given \
    -find "${file}/homerResults/${motif}.motif" \
    > "${file}_${gene}.txt"

  cut -f1 "${file}_${gene}.txt" | sed '1d' | sort -u \
    > "${file}_${gene}_peak.txt"

done < Candidate_test.txt