#!/bin/bash
cd "$(dirname "$0")"

# OCR_allTissue.txt: Tissue(7), Age(8), Exposure(10)
# Filter: Tissue=="Br", Age=="adt", Exposure in {BPA10mg, BPA10ug}
awk -F'\t' 'NR==1 || ($7=="Br" && $8=="adt" && ($10=="BPA10mg" || $10=="BPA10ug"))' \
  OCR_allTissue.txt > OCR_adt_br.txt

# DEG file: tissue(15), stage(16), lab(10)
# Filter: tissue=="brain", stage=="20weeks", lab=="Bartolomei"
awk -F'\t' 'NR==1 || ($15=="brain" && $16=="20weeks" && $10=="Bartolomei")' \
  20230821_heart_lung_brain_treatment_deg_after_RUVr.txt > DEG_adt_br.txt