Information for 5-AGAGGGCGCT (Motif 5)

C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T
Reverse Opposite:
C T G A A T C G A G T C C T A G T G A C G T A C T G A C A G C T A G T C A G C T
p-value:1e-909
log p-value:-2.094e+03
Information Content per bp:1.678
Number of Target Sequences with motif13089.0
Percentage of Target Sequences with motif16.97%
Number of Background Sequences with motif7270.3
Percentage of Background Sequences with motif9.48%
Average Position of motif in Targets368.8 +/- 306.4bp
Average Position of motif in Background264.9 +/- 157.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCFL/MA1102.2/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AGAGGGCGCT
AGCAGGGGGCGC-
 A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T
T C G A T A C G A T G C T G C A A T C G T C A G A T C G A T C G C A T G G A T C T C A G A T G C A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCGCT----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.69
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCGCT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.69
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCGCT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGGCGCT
AGRGGTCA--
 C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCT---
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCGCT
CAAAGGTCAG-
 A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCT
CAAGATGGCGGC
 A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCGCT---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCGCT--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T C T G A C T A G C T G A A C T G C A T G A C T G A G T C C T A G A T G C A G C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G