Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 77116)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 76729)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3976	-9.156e+03	0.0000	12940.0	16.78%	3138.2	4.09%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3141	-7.234e+03	0.0000	14751.0	19.13%	4817.1	6.28%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1571	-3.619e+03	0.0000	18300.0	23.73%	9619.7	12.55%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-901	-2.075e+03	0.0000	28988.0	37.59%	20659.6	26.95%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-879	-2.026e+03	0.0000	14754.0	19.13%	8641.5	11.27%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-805	-1.856e+03	0.0000	4605.0	5.97%	1629.2	2.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-652	-1.502e+03	0.0000	4069.0	5.28%	1513.5	1.97%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-646	-1.489e+03	0.0000	18560.0	24.07%	12577.6	16.41%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-640	-1.476e+03	0.0000	12855.0	16.67%	7874.6	10.27%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-596	-1.373e+03	0.0000	5308.0	6.88%	2381.0	3.11%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-569	-1.312e+03	0.0000	24943.0	32.34%	18547.4	24.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-560	-1.290e+03	0.0000	12024.0	15.59%	7480.6	9.76%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-553	-1.274e+03	0.0000	8653.0	11.22%	4868.9	6.35%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-543	-1.251e+03	0.0000	33926.0	43.99%	27038.1	35.27%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-519	-1.196e+03	0.0000	28402.0	36.83%	21989.2	28.68%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-497	-1.146e+03	0.0000	11076.0	14.36%	6937.6	9.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-479	-1.103e+03	0.0000	5494.0	7.12%	2744.8	3.58%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-465	-1.072e+03	0.0000	15418.0	19.99%	10672.9	13.92%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-464	-1.069e+03	0.0000	9623.0	12.48%	5894.9	7.69%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e-447	-1.030e+03	0.0000	9011.0	11.68%	5468.0	7.13%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-433	-9.980e+02	0.0000	23560.0	30.55%	18041.9	23.53%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-431	-9.944e+02	0.0000	37745.0	48.94%	31436.2	41.00%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-408	-9.409e+02	0.0000	30791.0	39.93%	24919.0	32.50%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-378	-8.726e+02	0.0000	24345.0	31.57%	19094.1	24.91%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-377	-8.687e+02	0.0000	20791.0	26.96%	15863.4	20.69%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-367	-8.467e+02	0.0000	20672.0	26.81%	15813.9	20.63%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-338	-7.795e+02	0.0000	9930.0	12.88%	6618.1	8.63%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-327	-7.540e+02	0.0000	14997.0	19.45%	10995.1	14.34%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-327	-7.532e+02	0.0000	21863.0	28.35%	17154.5	22.38%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-317	-7.310e+02	0.0000	16867.0	21.87%	12703.9	16.57%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-317	-7.310e+02	0.0000	15473.0	20.06%	11469.8	14.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-312	-7.189e+02	0.0000	46793.0	60.68%	41343.3	53.93%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-291	-6.718e+02	0.0000	2030.0	2.63%	797.0	1.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-282	-6.497e+02	0.0000	14303.0	18.55%	10643.8	13.88%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-255	-5.892e+02	0.0000	13123.0	17.02%	9761.4	12.73%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-236	-5.435e+02	0.0000	19395.0	25.15%	15536.2	20.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-230	-5.311e+02	0.0000	5525.0	7.16%	3477.9	4.54%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-193	-4.464e+02	0.0000	14972.0	19.41%	11822.8	15.42%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-189	-4.372e+02	0.0000	13521.0	17.53%	10544.3	13.75%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-182	-4.204e+02	0.0000	21382.0	27.73%	17822.6	23.25%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-174	-4.014e+02	0.0000	13954.0	18.09%	11049.5	14.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-173	-4.003e+02	0.0000	14142.0	18.34%	11223.1	14.64%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-171	-3.951e+02	0.0000	9160.0	11.88%	6808.5	8.88%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-171	-3.938e+02	0.0000	15748.0	20.42%	12707.2	16.57%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-168	-3.886e+02	0.0000	16862.0	21.87%	13748.5	17.93%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-168	-3.879e+02	0.0000	51620.0	66.94%	47641.2	62.14%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-168	-3.870e+02	0.0000	14335.0	18.59%	11443.3	14.93%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-167	-3.853e+02	0.0000	24787.0	32.14%	21180.6	27.63%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-165	-3.819e+02	0.0000	11894.0	15.42%	9260.1	12.08%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-164	-3.792e+02	0.0000	2762.0	3.58%	1564.7	2.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-159	-3.672e+02	0.0000	3275.0	4.25%	1970.5	2.57%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-155	-3.587e+02	0.0000	9893.0	12.83%	7553.5	9.85%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-143	-3.297e+02	0.0000	16699.0	21.65%	13826.6	18.04%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-141	-3.252e+02	0.0000	36268.0	47.03%	32584.0	42.50%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-140	-3.247e+02	0.0000	12648.0	16.40%	10131.8	13.22%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-139	-3.208e+02	0.0000	20975.0	27.20%	17861.6	23.30%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-132	-3.061e+02	0.0000	1591.0	2.06%	800.5	1.04%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-132	-3.054e+02	0.0000	6978.0	9.05%	5156.6	6.73%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-130	-2.997e+02	0.0000	3991.0	5.18%	2653.9	3.46%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-129	-2.972e+02	0.0000	1109.0	1.44%	484.5	0.63%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-124	-2.865e+02	0.0000	6991.0	9.07%	5219.8	6.81%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-123	-2.842e+02	0.0000	10708.0	13.89%	8521.2	11.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-121	-2.809e+02	0.0000	9283.0	12.04%	7255.1	9.46%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-121	-2.804e+02	0.0000	23704.0	30.74%	20645.3	26.93%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-119	-2.758e+02	0.0000	25428.0	32.97%	22319.9	29.11%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-118	-2.718e+02	0.0000	7679.0	9.96%	5863.4	7.65%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-116	-2.689e+02	0.0000	9338.0	12.11%	7344.5	9.58%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-110	-2.537e+02	0.0000	23001.0	29.83%	20114.9	26.24%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-109	-2.522e+02	0.0000	910.0	1.18%	391.3	0.51%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-107	-2.477e+02	0.0000	13688.0	17.75%	11385.1	14.85%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-103	-2.386e+02	0.0000	2246.0	2.91%	1369.2	1.79%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-100	-2.319e+02	0.0000	5227.0	6.78%	3844.5	5.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-99	-2.300e+02	0.0000	34235.0	44.39%	31138.9	40.62%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-91	-2.116e+02	0.0000	6754.0	8.76%	5237.8	6.83%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-91	-2.116e+02	0.0000	22700.0	29.44%	20062.2	26.17%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-91	-2.096e+02	0.0000	10136.0	13.14%	8286.2	10.81%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-90	-2.085e+02	0.0000	3340.0	4.33%	2305.7	3.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-89	-2.053e+02	0.0000	2985.0	3.87%	2019.5	2.63%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-89	-2.053e+02	0.0000	2985.0	3.87%	2019.5	2.63%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-88	-2.035e+02	0.0000	9875.0	12.81%	8073.9	10.53%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-87	-2.020e+02	0.0000	1498.0	1.94%	852.6	1.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-85	-1.970e+02	0.0000	6609.0	8.57%	5157.5	6.73%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-84	-1.951e+02	0.0000	6024.0	7.81%	4646.5	6.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-83	-1.913e+02	0.0000	29443.0	38.18%	26705.8	34.83%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-82	-1.896e+02	0.0000	10582.0	13.72%	8779.5	11.45%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-82	-1.891e+02	0.0000	9914.0	12.86%	8169.8	10.66%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-82	-1.890e+02	0.0000	4941.0	6.41%	3717.5	4.85%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-81	-1.886e+02	0.0000	32032.0	41.54%	29252.3	38.16%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e-81	-1.867e+02	0.0000	6732.0	8.73%	5302.4	6.92%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-80	-1.861e+02	0.0000	11677.0	15.14%	9805.0	12.79%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-80	-1.859e+02	0.0000	5263.0	6.82%	4007.4	5.23%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-77	-1.785e+02	0.0000	4266.0	5.53%	3163.6	4.13%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-77	-1.779e+02	0.0000	10378.0	13.46%	8644.2	11.28%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-76	-1.751e+02	0.0000	8748.0	11.34%	7164.5	9.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-75	-1.728e+02	0.0000	4295.0	5.57%	3204.7	4.18%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-73	-1.692e+02	0.0000	2717.0	3.52%	1875.5	2.45%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-72	-1.679e+02	0.0000	6753.0	8.76%	5389.2	7.03%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-69	-1.590e+02	0.0000	4846.0	6.28%	3726.1	4.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-68	-1.574e+02	0.0000	3988.0	5.17%	2983.5	3.89%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-68	-1.573e+02	0.0000	16944.0	21.97%	14900.9	19.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-67	-1.544e+02	0.0000	1386.0	1.80%	834.0	1.09%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-65	-1.519e+02	0.0000	9423.0	12.22%	7887.0	10.29%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-62	-1.447e+02	0.0000	10512.0	13.63%	8928.9	11.65%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-61	-1.425e+02	0.0000	12162.0	15.77%	10478.3	13.67%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-61	-1.408e+02	0.0000	2013.0	2.61%	1356.3	1.77%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-60	-1.403e+02	0.0000	1510.0	1.96%	953.9	1.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-60	-1.399e+02	0.0000	1754.0	2.27%	1148.8	1.50%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-60	-1.395e+02	0.0000	1302.0	1.69%	792.3	1.03%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-60	-1.387e+02	0.0000	15757.0	20.43%	13889.6	18.12%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-59	-1.378e+02	0.0000	11284.0	14.63%	9683.3	12.63%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-59	-1.363e+02	0.0000	15474.0	20.07%	13636.6	17.79%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-58	-1.358e+02	0.0000	11593.0	15.03%	9983.8	13.02%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-58	-1.353e+02	0.0000	21694.0	28.13%	19592.6	25.56%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-58	-1.353e+02	0.0000	11301.0	14.65%	9713.2	12.67%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-57	-1.325e+02	0.0000	6222.0	8.07%	5050.9	6.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-55	-1.269e+02	0.0000	9312.0	12.08%	7907.0	10.31%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-55	-1.267e+02	0.0000	12965.0	16.81%	11324.7	14.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-53	-1.243e+02	0.0000	14253.0	18.48%	12556.1	16.38%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-52	-1.203e+02	0.0000	2050.0	2.66%	1431.6	1.87%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-50	-1.152e+02	0.0000	10622.0	13.77%	9192.8	11.99%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-50	-1.152e+02	0.0000	16585.0	21.51%	14836.7	19.35%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-49	-1.140e+02	0.0000	3238.0	4.20%	2462.9	3.21%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-49	-1.138e+02	0.0000	7639.0	9.91%	6428.5	8.39%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-49	-1.137e+02	0.0000	5319.0	6.90%	4313.0	5.63%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-49	-1.133e+02	0.0000	11455.0	14.85%	9985.1	13.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-49	-1.132e+02	0.0000	1987.0	2.58%	1395.5	1.82%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-46	-1.081e+02	0.0000	4786.0	6.21%	3855.6	5.03%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-46	-1.071e+02	0.0000	6716.0	8.71%	5613.5	7.32%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-45	-1.052e+02	0.0000	14971.0	19.41%	13368.5	17.44%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-44	-1.035e+02	0.0000	5069.0	6.57%	4129.2	5.39%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-42	-9.696e+01	0.0000	5535.0	7.18%	4581.9	5.98%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-38	-8.878e+01	0.0000	9979.0	12.94%	8752.8	11.42%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-36	-8.442e+01	0.0000	11174.0	14.49%	9910.1	12.93%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-36	-8.406e+01	0.0000	979.0	1.27%	631.3	0.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-36	-8.354e+01	0.0000	855.0	1.11%	534.0	0.70%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-34	-7.962e+01	0.0000	1203.0	1.56%	821.9	1.07%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-33	-7.755e+01	0.0000	14009.0	18.17%	12662.1	16.52%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-32	-7.548e+01	0.0000	21563.0	27.96%	19970.0	26.05%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-31	-7.177e+01	0.0000	27205.0	35.28%	25516.1	33.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-30	-6.979e+01	0.0000	3322.0	4.31%	2696.6	3.52%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-28	-6.652e+01	0.0000	4642.0	6.02%	3914.0	5.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-28	-6.478e+01	0.0000	25189.0	32.66%	23620.9	30.81%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-27	-6.317e+01	0.0000	4740.0	6.15%	4021.0	5.24%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-27	-6.240e+01	0.0000	4552.0	5.90%	3852.5	5.03%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-26	-6.154e+01	0.0000	10720.0	13.90%	9654.6	12.59%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-26	-6.120e+01	0.0000	1326.0	1.72%	968.9	1.26%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-26	-6.108e+01	0.0000	18010.0	23.35%	16669.7	21.74%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-26	-6.047e+01	0.0000	2624.0	3.40%	2108.7	2.75%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-25	-5.954e+01	0.0000	14070.0	18.24%	12880.7	16.80%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-25	-5.903e+01	0.0000	3912.0	5.07%	3282.5	4.28%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-23	-5.349e+01	0.0000	5986.0	7.76%	5238.9	6.83%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-21	-5.050e+01	0.0000	1569.0	2.03%	1210.5	1.58%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-21	-5.004e+01	0.0000	2021.0	2.62%	1611.7	2.10%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-21	-4.957e+01	0.0000	13448.0	17.44%	12380.8	16.15%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-21	-4.948e+01	0.0000	347.0	0.45%	196.2	0.26%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-21	-4.842e+01	0.0000	21175.0	27.46%	19892.8	25.95%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-20	-4.785e+01	0.0000	7931.0	10.28%	7115.5	9.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-20	-4.774e+01	0.0000	22969.0	29.78%	21654.8	28.25%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-20	-4.756e+01	0.0000	2143.0	2.78%	1730.2	2.26%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-19	-4.492e+01	0.0000	1838.0	2.38%	1468.7	1.92%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-19	-4.477e+01	0.0000	2161.0	2.80%	1758.4	2.29%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-19	-4.429e+01	0.0000	2453.0	3.18%	2024.2	2.64%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-18	-4.305e+01	0.0000	5369.0	6.96%	4732.6	6.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-17	-4.035e+01	0.0000	13403.0	17.38%	12437.9	16.22%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-17	-3.925e+01	0.0000	5031.0	6.52%	4442.3	5.79%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-16	-3.853e+01	0.0000	4772.0	6.19%	4204.2	5.48%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-16	-3.686e+01	0.0000	1111.0	1.44%	855.4	1.12%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-13	-3.056e+01	0.0000	6258.0	8.11%	5676.8	7.40%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-13	-3.027e+01	0.0000	4513.0	5.85%	4023.8	5.25%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-13	-3.020e+01	0.0000	6331.0	8.21%	5749.1	7.50%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-12	-2.900e+01	0.0000	6342.0	8.22%	5771.5	7.53%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-11	-2.744e+01	0.0000	970.0	1.26%	764.5	1.00%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-10	-2.337e+01	0.0000	6205.0	8.05%	5698.0	7.43%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-10	-2.333e+01	0.0000	13422.0	17.40%	12681.1	16.54%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-10	-2.312e+01	0.0000	4055.0	5.26%	3650.4	4.76%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-9	-2.182e+01	0.0000	12911.0	16.74%	12207.2	15.92%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.115e+01	0.0000	28249.0	36.63%	27279.3	35.58%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-8	-2.068e+01	0.0000	39976.0	51.84%	38914.0	50.76%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-8	-2.027e+01	0.0000	6260.0	8.12%	5786.7	7.55%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.996e+01	0.0000	17052.0	22.11%	16285.4	21.24%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-8	-1.993e+01	0.0000	16352.0	21.20%	15600.5	20.35%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-8	-1.860e+01	0.0000	2846.0	3.69%	2545.4	3.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-7	-1.842e+01	0.0000	17175.0	22.27%	16435.0	21.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-7	-1.824e+01	0.0000	1804.0	2.34%	1570.0	2.05%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-7	-1.793e+01	0.0000	2252.0	2.92%	1991.5	2.60%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.766e+01	0.0000	15378.0	19.94%	14689.7	19.16%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-7	-1.756e+01	0.0000	9775.0	12.68%	9223.9	12.03%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-7	-1.744e+01	0.0000	252.0	0.33%	175.0	0.23%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-7	-1.735e+01	0.0000	5641.0	7.31%	5227.0	6.82%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-7	-1.730e+01	0.0000	12037.0	15.61%	11430.5	14.91%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-7	-1.729e+01	0.0000	5399.0	7.00%	4995.0	6.52%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-7	-1.701e+01	0.0000	16653.0	21.59%	15951.3	20.81%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-7	-1.701e+01	0.0000	5254.0	6.81%	4858.1	6.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-7	-1.695e+01	0.0000	16872.0	21.88%	16168.0	21.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-7	-1.679e+01	0.0000	1988.0	2.58%	1752.7	2.29%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-7	-1.642e+01	0.0000	2015.0	2.61%	1780.4	2.32%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-7	-1.632e+01	0.0000	5056.0	6.56%	4676.8	6.10%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-6	-1.542e+01	0.0000	23056.0	29.90%	22283.3	29.07%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-6	-1.536e+01	0.0000	9933.0	12.88%	9413.9	12.28%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-6	-1.452e+01	0.0000	1032.0	1.34%	878.7	1.15%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-5	-1.318e+01	0.0000	1819.0	2.36%	1621.5	2.11%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-5	-1.314e+01	0.0000	29290.0	37.98%	28501.0	37.18%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-5	-1.300e+01	0.0000	1209.0	1.57%	1051.0	1.37%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.300e+01	0.0000	17291.0	22.42%	16665.9	21.74%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-4	-1.143e+01	0.0000	2307.0	2.99%	2099.2	2.74%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.115e+01	0.0000	30921.0	40.10%	30174.2	39.36%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-4	-1.098e+01	0.0000	1419.0	1.84%	1262.4	1.65%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-4	-1.051e+01	0.0001	1686.0	2.19%	1518.9	1.98%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-1.033e+01	0.0001	4188.0	5.43%	3918.9	5.11%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-4	-9.769e+00	0.0001	2618.0	3.39%	2414.4	3.15%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-4	-9.667e+00	0.0001	60989.0	79.09%	60197.4	78.52%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-4	-9.400e+00	0.0002	9206.0	11.94%	8818.1	11.50%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-4	-9.337e+00	0.0002	12214.0	15.84%	11767.8	15.35%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-8.505e+00	0.0004	5634.0	7.31%	5350.4	6.98%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-3	-8.181e+00	0.0006	14736.0	19.11%	14277.8	18.62%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-7.900e+00	0.0008	1581.0	2.05%	1443.2	1.88%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-3	-7.712e+00	0.0009	30241.0	39.21%	29616.2	38.63%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-3	-7.385e+00	0.0013	2062.0	2.67%	1909.1	2.49%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-3	-7.191e+00	0.0015	7026.0	9.11%	6735.9	8.79%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-3	-7.098e+00	0.0017	414.0	0.54%	351.1	0.46%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e-2	-6.691e+00	0.0025	1024.0	1.33%	925.3	1.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-6.564e+00	0.0028	4294.0	5.57%	4082.9	5.33%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.460e+00	0.0031	4217.0	5.47%	4009.7	5.23%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-6.439e+00	0.0031	19982.0	25.91%	19509.9	25.45%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-6.238e+00	0.0038	14992.0	19.44%	14590.1	19.03%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.042e+00	0.0046	4861.0	6.30%	4645.2	6.06%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.696e+00	0.0065	8077.0	10.47%	7802.3	10.18%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-5.568e+00	0.0074	21320.0	27.65%	20866.8	27.22%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.376e+00	0.0089	3114.0	4.04%	2956.9	3.86%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-2	-5.180e+00	0.0108	11588.0	15.03%	11271.2	14.70%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-4.940e+00	0.0136	8648.0	11.21%	8385.2	10.94%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-4.868e+00	0.0146	22307.0	28.93%	21873.6	28.53%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-4.780e+00	0.0159	3934.0	5.10%	3767.7	4.91%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-4.778e+00	0.0159	187.0	0.24%	155.7	0.20%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-4.703e+00	0.0170	9877.0	12.81%	9602.0	12.52%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-4.437e+00	0.0221	18051.0	23.41%	17681.7	23.06%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-4.406e+00	0.0227	11568.0	15.00%	11279.6	14.71%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-1	-3.968e+00	0.0350	20456.0	26.53%	20083.6	26.20%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.291e+00	0.0685	14290.0	18.53%	14015.5	18.28%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.065e+00	0.0855	8902.0	11.54%	8702.2	11.35%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-3.061e+00	0.0855	116.0	0.15%	98.5	0.13%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.974e+00	0.0929	7258.0	9.41%	7084.4	9.24%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.920e+00	0.0976	475.0	0.62%	439.0	0.57%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.848e+00	0.1045	13213.0	17.13%	12972.7	16.92%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-2.542e+00	0.1413	529.0	0.69%	494.8	0.65%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-2.457e+00	0.1532	163.0	0.21%	145.5	0.19%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.124e+00	0.2130	1020.0	1.32%	977.8	1.28%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.097e+00	0.2179	14770.0	19.15%	14557.8	18.99%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.045e+00	0.2286	11229.0	14.56%	11053.9	14.42%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.003e+00	0.2375	1665.0	2.16%	1611.7	2.10%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.895e+00	0.2634	23515.0	30.49%	23245.3	30.32%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.875e+00	0.2679	350.0	0.45%	329.8	0.43%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.263e+00	0.4918	39.0	0.05%	35.9	0.05%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.077e+00	0.5902	7379.0	9.57%	7302.9	9.53%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.066e+00	0.5941	4891.0	6.34%	4835.7	6.31%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.045e+00	0.6043	3755.0	4.87%	3710.5	4.84%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.973e-01	0.6315	2682.0	3.48%	2649.2	3.46%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.009e-01	0.6927	145.0	0.19%	141.2	0.18%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.897e-01	0.6978	92.0	0.12%	89.3	0.12%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-7.904e-01	0.7677	3560.0	4.62%	3532.0	4.61%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.278e-01	0.8142	21835.0	28.31%	21701.1	28.31%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.277e-01	0.8142	3604.0	4.67%	3580.0	4.67%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.607e-01	0.8641	24664.0	31.98%	24524.5	31.99%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.238e-01	1.0000	2710.0	3.51%	2714.1	3.54%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-3.982e-01	1.0000	11912.0	15.45%	11886.8	15.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.679e-01	1.0000	2939.0	3.81%	2948.4	3.85%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-3.336e-01	1.0000	15476.0	20.07%	15448.6	20.15%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.236e-01	1.0000	1897.0	2.46%	1911.8	2.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.202e-01	1.0000	13603.0	17.64%	13586.7	17.72%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.115e-01	1.0000	1757.0	2.28%	1772.7	2.31%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.115e-01	1.0000	1757.0	2.28%	1772.7	2.31%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-2.938e-01	1.0000	8117.0	10.53%	8125.6	10.60%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.762e-01	1.0000	688.0	0.89%	702.5	0.92%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.707e-01	1.0000	1771.0	2.30%	1790.6	2.34%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-2.522e-01	1.0000	3985.0	5.17%	4008.6	5.23%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.326e-01	1.0000	13485.0	17.49%	13492.0	17.60%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.052e-01	1.0000	6746.0	8.75%	6776.6	8.84%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-2.037e-01	1.0000	8304.0	10.77%	8332.0	10.87%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-2.008e-01	1.0000	15262.0	19.79%	15272.3	19.92%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.910e-01	1.0000	2448.0	3.17%	2479.6	3.23%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.616e-01	1.0000	4681.0	6.07%	4722.8	6.16%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.343e-01	1.0000	21884.0	28.38%	21898.8	28.56%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.340e-01	1.0000	26851.0	34.82%	26844.5	35.02%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.194e-01	1.0000	8431.0	10.93%	8486.5	11.07%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.099e-01	1.0000	3800.0	4.93%	3853.7	5.03%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.033e-01	1.0000	15837.0	20.54%	15888.3	20.72%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.285e-02	1.0000	2162.0	2.80%	2211.9	2.89%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.239e-02	1.0000	20586.0	26.69%	20630.7	26.91%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-8.442e-02	1.0000	25899.0	33.58%	25929.1	33.82%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-7.945e-02	1.0000	1499.0	1.94%	1545.1	2.02%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.703e-02	1.0000	10169.0	13.19%	10251.7	13.37%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-6.249e-02	1.0000	3686.0	4.78%	3756.9	4.90%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.971e-02	1.0000	27768.0	36.01%	27813.9	36.28%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.393e-02	1.0000	8019.0	10.40%	8117.6	10.59%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.699e-02	1.0000	1688.0	2.19%	1757.9	2.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.576e-02	1.0000	10055.0	13.04%	10178.9	13.28%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.518e-02	1.0000	13489.0	17.49%	13616.2	17.76%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.557e-02	1.0000	939.0	1.22%	1000.3	1.30%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.528e-02	1.0000	10899.0	14.13%	11044.3	14.41%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.307e-02	1.0000	17685.0	22.93%	17840.9	23.27%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.297e-02	1.0000	897.0	1.16%	959.2	1.25%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.096e-02	1.0000	1065.0	1.38%	1134.6	1.48%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.678e-03	1.0000	194.0	0.25%	228.8	0.30%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.613e-03	1.0000	3247.0	4.21%	3364.5	4.39%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.247e-03	1.0000	13056.0	16.93%	13239.6	17.27%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.653e-03	1.0000	6425.0	8.33%	6582.3	8.59%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-5.371e-03	1.0000	18018.0	23.36%	18211.3	23.75%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.602e-03	1.0000	3725.0	4.83%	3859.9	5.03%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.124e-03	1.0000	16282.0	21.11%	16485.7	21.50%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-3.274e-03	1.0000	9813.0	12.72%	10007.3	13.05%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.436e-03	1.0000	21.0	0.03%	37.0	0.05%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.609e-03	1.0000	6518.0	8.45%	6708.6	8.75%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.503e-03	1.0000	22487.0	29.16%	22728.6	29.65%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.291e-03	1.0000	4236.0	5.49%	4403.2	5.74%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-1.129e-03	1.0000	19337.0	25.07%	19590.9	25.55%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.062e-03	1.0000	17703.0	22.96%	17957.1	23.42%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-4.890e-04	1.0000	27883.0	36.16%	28158.0	36.73%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.690e-04	1.0000	8291.0	10.75%	8541.1	11.14%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-5.400e-05	1.0000	388.0	0.50%	466.6	0.61%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.200e-05	1.0000	12888.0	16.71%	13215.2	17.24%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.300e-05	1.0000	3358.0	4.35%	3564.3	4.65%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.900e-05	1.0000	7015.0	9.10%	7297.2	9.52%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-6.000e-06	1.0000	19996.0	25.93%	20413.4	26.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.000e-06	1.0000	8362.0	10.84%	8726.2	11.38%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-0.000e+00	1.0000	2361.0	3.06%	2588.2	3.38%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-0.000e+00	1.0000	12880.0	16.70%	13317.6	17.37%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	14279.0	18.52%	14732.2	19.22%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-0.000e+00	1.0000	21216.0	27.51%	21730.2	28.34%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-0.000e+00	1.0000	9715.0	12.60%	10143.2	13.23%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	5650.0	7.33%	6010.5	7.84%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-0.000e+00	1.0000	2893.0	3.75%	3174.1	4.14%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	546.0	0.71%	683.3	0.89%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	1174.0	1.52%	1368.2	1.78%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	15442.0	20.02%	15988.0	20.85%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-0.000e+00	1.0000	15469.0	20.06%	16020.0	20.90%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	16841.0	21.84%	17422.0	22.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-0.000e+00	1.0000	8044.0	10.43%	8506.6	11.10%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-0.000e+00	1.0000	11061.0	14.34%	11582.5	15.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	26533.0	34.41%	27167.1	35.44%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	226.0	0.29%	326.2	0.43%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-0.000e+00	1.0000	20135.0	26.11%	20752.0	27.07%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	18734.0	24.29%	19345.2	25.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-0.000e+00	1.0000	6942.0	9.00%	7395.2	9.65%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-0.000e+00	1.0000	3486.0	4.52%	3835.8	5.00%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	5750.0	7.46%	6186.9	8.07%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	25053.0	32.49%	25738.8	33.57%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	18137.0	23.52%	18807.9	24.53%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-0.000e+00	1.0000	6436.0	8.35%	6916.9	9.02%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	25001.0	32.42%	25717.2	33.54%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-0.000e+00	1.0000	14180.0	18.39%	14816.9	19.33%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	1257.0	1.63%	1496.1	1.95%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	14346.0	18.60%	15046.9	19.63%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-0.000e+00	1.0000	4497.0	5.83%	4964.3	6.48%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	31270.0	40.55%	32100.6	41.87%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-0.000e+00	1.0000	28176.0	36.54%	29039.8	37.88%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	7638.0	9.90%	8244.2	10.75%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-0.000e+00	1.0000	23042.0	29.88%	23899.7	31.17%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-0.000e+00	1.0000	17578.0	22.79%	18404.3	24.01%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	27128.0	35.18%	28023.9	36.55%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-0.000e+00	1.0000	1738.0	2.25%	2081.0	2.71%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-0.000e+00	1.0000	7480.0	9.70%	8119.8	10.59%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-0.000e+00	1.0000	25578.0	33.17%	26496.9	34.56%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-0.000e+00	1.0000	31316.0	40.61%	32245.5	42.06%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-0.000e+00	1.0000	23994.0	31.11%	24918.6	32.50%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	0.000e+00	1.0000	57709.0	74.83%	59428.0	77.52%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	0.000e+00	1.0000	30406.0	39.43%	31393.5	40.95%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	34918.0	45.28%	37682.7	49.15%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	0.000e+00	1.0000	23107.0	29.96%	25186.5	32.85%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	0.000e+00	1.0000	26158.0	33.92%	27317.0	35.63%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	0.000e+00	1.0000	29783.0	38.62%	31541.5	41.14%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	0.000e+00	1.0000	3654.0	4.74%	4159.1	5.42%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	0.000e+00	1.0000	7851.0	10.18%	9815.4	12.80%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	0.000e+00	1.0000	10914.0	14.15%	12622.9	16.46%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	34678.0	44.97%	36790.7	47.99%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	28178.0	36.54%	29948.1	39.06%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	25498.0	33.06%	29657.8	38.68%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	30933.0	40.11%	33058.1	43.12%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	1032.0	1.34%	1341.6	1.75%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	0.000e+00	1.0000	4612.0	5.98%	5878.7	7.67%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	0.000e+00	1.0000	2017.0	2.62%	2597.8	3.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	17548.0	22.75%	19722.8	25.73%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	34973.0	45.35%	37113.7	48.41%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	0.000e+00	1.0000	29937.0	38.82%	32655.7	42.60%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	0.000e+00	1.0000	31575.0	40.94%	34238.7	44.66%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	0.000e+00	1.0000	36476.0	47.30%	38765.9	50.57%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	0.000e+00	1.0000	14292.0	18.53%	15564.8	20.30%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	0.000e+00	1.0000	15896.0	20.61%	17181.5	22.41%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	0.000e+00	1.0000	31017.0	40.22%	34081.8	44.46%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	23865.0	30.95%	26017.5	33.94%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	0.000e+00	1.0000	20316.0	26.34%	22752.1	29.68%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	0.000e+00	1.0000	27711.0	35.93%	29083.3	37.94%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	0.000e+00	1.0000	32390.0	42.00%	33638.1	43.88%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	0.000e+00	1.0000	8096.0	10.50%	9295.9	12.13%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	21477.0	27.85%	28186.0	36.77%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	0.000e+00	1.0000	18266.0	23.69%	19520.1	25.46%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	53581.0	69.48%	55700.4	72.65%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	44589.0	57.82%	48637.3	63.44%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	33115.0	42.94%	35383.8	46.15%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	36091.0	46.80%	39087.7	50.98%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	37505.0	48.63%	39874.6	52.01%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	32332.0	41.93%	33586.5	43.81%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	19969.0	25.89%	20896.5	27.26%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	0.000e+00	1.0000	26463.0	34.31%	28058.1	36.60%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	0.000e+00	1.0000	5381.0	6.98%	6048.1	7.89%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	1808.0	2.34%	2272.1	2.96%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	0.000e+00	1.0000	4853.0	6.29%	5665.1	7.39%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	1017.0	1.32%	1916.8	2.50%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	0.000e+00	1.0000	33323.0	43.21%	34675.2	45.23%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	12183.0	15.80%	14310.0	18.67%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	0.000e+00	1.0000	3675.0	4.77%	4186.1	5.46%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	0.000e+00	1.0000	11100.0	14.39%	13546.3	17.67%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	52363.0	67.90%	55737.1	72.70%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	0.000e+00	1.0000	11417.0	14.80%	12539.9	16.36%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	0.000e+00	1.0000	38781.0	50.29%	39772.1	51.88%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	0.000e+00	1.0000	5926.0	7.68%	6782.6	8.85%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	0.000e+00	1.0000	7667.0	9.94%	9036.4	11.79%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	43957.0	57.00%	47430.5	61.87%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	1851.0	2.40%	2406.7	3.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	0.000e+00	1.0000	18496.0	23.98%	19559.8	25.51%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	0.000e+00	1.0000	15184.0	19.69%	16198.2	21.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	0.000e+00	1.0000	61499.0	79.75%	63622.4	82.99%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	0.000e+00	1.0000	30353.0	39.36%	31643.0	41.27%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	0.000e+00	1.0000	48332.0	62.67%	49902.8	65.09%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	16313.0	21.15%	18759.7	24.47%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	11000.0	14.26%	12694.4	16.56%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	0.000e+00	1.0000	27629.0	35.83%	30136.6	39.31%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	0.000e+00	1.0000	18821.0	24.41%	20897.3	27.26%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	16409.0	21.28%	17511.7	22.84%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	15031.0	19.49%	16127.8	21.04%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	48413.0	62.78%	51217.5	66.81%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	0.000e+00	1.0000	28048.0	36.37%	29687.9	38.72%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	0.000e+00	1.0000	45244.0	58.67%	47311.4	61.71%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	0.000e+00	1.0000	48793.0	63.27%	49880.1	65.06%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	0.000e+00	1.0000	31078.0	40.30%	33502.6	43.70%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	42366.0	54.94%	46398.6	60.52%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	0.000e+00	1.0000	9016.0	11.69%	9739.1	12.70%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	29830.0	38.68%	34526.7	45.04%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	17826.0	23.12%	21121.5	27.55%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	0.000e+00	1.0000	33336.0	43.23%	34969.7	45.61%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	0.000e+00	1.0000	32910.0	42.67%	34354.9	44.81%