Information for 17-RTTAGGTCAS (Motif 12)

T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
Reverse Opposite:
T A C G A C G T A C T G C G T A G T A C A T G C A G C T G C T A T C G A A G C T
p-value:1e-186
log p-value:-4.294e+02
Information Content per bp:1.640
Number of Target Sequences with motif17489.0
Percentage of Target Sequences with motif24.72%
Number of Background Sequences with motif14204.8
Percentage of Background Sequences with motif20.21%
Average Position of motif in Targets319.3 +/- 269.7bp
Average Position of motif in Background267.6 +/- 160.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.93
Offset:3
Orientation:forward strand
Alignment:RTTAGGTCAS
---AGGTCA-
 T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:RTTAGGTCAS
-TRAGGTCA-
 T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RTTAGGTCAS
-CGAGGTCAC
 T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
A C G T G T A C C T A G T C G A A C T G A C T G A C G T A T G C C T G A G A T C

NR2C2(var.2)/MA1536.1/Jaspar

Match Rank:4
Score:0.88
Offset:2
Orientation:forward strand
Alignment:RTTAGGTCAS
--GAGGTCAT
 T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
A C G T A C G T T C A G T C G A A C T G A C T G A C G T A G T C C T G A G C A T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RTTAGGTCAS
ATCAAGGTCA-
 A C G T T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.87
Offset:2
Orientation:forward strand
Alignment:RTTAGGTCAS
--AAGGTCAC
 T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

RORB/MA1150.1/Jaspar

Match Rank:7
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-RTTAGGTCAS
AATTAGGTCAC
 A C G T T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---RTTAGGTCAS
NRBCARRGGTCA-
 A C G T A C G T A C G T T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
T C A G T C A G A C G T G T A C G C T A T C A G C T G A A C T G A C T G A G C T A G T C C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-RTTAGGTCAS
AAYTAGGTCA-
 A C G T T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-RTTAGGTCAS
AAYTAGGTCA-
 A C G T T C G A A G C T C G A T T C G A A T C G C A T G G C A T G T A C C G T A A T G C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T