Information for 3-GGTCAAAGKTCA (Motif 2)

C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
Reverse Opposite:
C G A T C T A G T C G A G T A C G A T C G A C T A G C T C A G T T C A G T G C A G T A C G A T C
p-value:1e-1924
log p-value:-4.430e+03
Information Content per bp:1.622
Number of Target Sequences with motif17589.0
Percentage of Target Sequences with motif24.86%
Number of Background Sequences with motif8427.0
Percentage of Background Sequences with motif11.99%
Average Position of motif in Targets301.6 +/- 241.6bp
Average Position of motif in Background265.1 +/- 160.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:1
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAAGKTCA
VNAGGKCAAAGGTCA
 A C G T A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----GGTCAAAGKTCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Nr2f6/MA0677.1/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
GAGGTCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

PPARD/MA1550.1/Jaspar

Match Rank:6
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GGTCAAAGKTCA-
AGGGGTCAAAGGTCAA
 A C G T A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A A C G T
G C T A T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T C A

RXRB/MA0855.1/Jaspar

Match Rank:7
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
GGGGTCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
TAGGGCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA
GAGGTCAAAGGTCA
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR2F1(var.2)/MA1537.1/Jaspar

Match Rank:10
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGTCAAAGKTCA-
GAGGTCAAAGGTCAC
 A C G T A C G T C T A G C A T G A C G T A G T C G T C A T C G A C T G A C T A G C A T G A G C T G A T C G C T A A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C C T G A G T A C