Information for 7-TTTTATTGGH (Motif 4)

A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
Reverse Opposite:
C T A G A T G C G T A C G T C A C G T A A C G T C T G A C G T A T C G A T G C A
p-value:1e-922
log p-value:-2.125e+03
Information Content per bp:1.663
Number of Target Sequences with motif10458.0
Percentage of Target Sequences with motif16.20%
Number of Background Sequences with motif5144.9
Percentage of Background Sequences with motif8.30%
Average Position of motif in Targets100.1 +/- 53.4bp
Average Position of motif in Background101.4 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGH
TTTTATTRGN
 A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGH
TTTTATKRGG
 A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGH
GTTTTATTGGN
 A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGH--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGH
NTTTTATDRG-
 A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

HOXB13/MA0901.2/Jaspar

Match Rank:6
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTGGH-
NNATTTTATTGGNN
 A C G T A C G T A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.91
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGH--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGH
TTTTATGGCM
 A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATTGGH
DGWTTTATGRCN
 A C G T A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGH
NTTTTATTACN
 A C G T A C G T A G C T G C A T G A C T T G C A C G A T C A G T C A T G T A C G G A T C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C