Information for 13-TGGCANNNTGCC (Motif 5)

C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C
Reverse Opposite:
C T A G C T A G T G A C G C T A T C A G G C T A A G T C C G A T A C T G G A T C A G T C G C T A
p-value:1e-542
log p-value:-1.249e+03
Information Content per bp:1.584
Number of Target Sequences with motif8541.0
Percentage of Target Sequences with motif13.23%
Number of Background Sequences with motif4673.7
Percentage of Background Sequences with motif7.54%
Average Position of motif in Targets99.5 +/- 53.5bp
Average Position of motif in Background100.0 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--TGGCANNNTGCC--
CTTGGCANNNTGCCAA
 A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-TGGCANNNTGCC-
CTGGCAGNCTGCCA
 A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIX(var.2)/MA1528.1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGGCANNNTGCC---
NNTGGCACNNTGCCAAN
 A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T A C G T
T A G C G A T C C A G T A C T G A C T G G T A C C T G A G T A C T A G C T C A G G A C T C A T G A G T C A G T C T G C A C G T A T A G C

NFIC(var.2)/MA1527.1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TGGCANNNTGCC---
NTTGGCACNNNGCCAAN
 A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T A C G T
T A C G G A C T A C G T A C T G A T C G A G T C C T G A A G T C A T G C T C A G G A C T A C T G A T G C A G T C G T C A C T G A T A G C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGGCANNNTGCC--
TGGCACCATGCCAA
 C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NFIB/MA1643.1/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TGGCANNNTGCC-----
TGCCTGGCATTGTGCCAAGCA
 A C G T A C G T A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C G A T C T A G A G T C G A T C C A G T A C T G C A T G T G A C G C T A A G C T C A G T T C A G C G A T A C T G A T G C A G T C G T C A C T G A T C A G G A C T G C T A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGGCANNNTGCC
NTTGGCANN-----
 A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGCANNNTGCC-
CAKCTGKYCYYTTYCCC
 A C G T A C G T A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TGGCANNNTGCC----
-------CTGCCCGCA
 C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGGCANNNTGCC
VGCTGGCA-------
 A C G T A C G T A C G T C G A T A C T G C T A G G T A C G C T A T C A G C G A T A G T C C G A T A C T G A G T C A G T C
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T