Information for 12-ACGTRCTG (Motif 6)

C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
Reverse Opposite:
T A G C C T G A C T A G G A T C C T G A A G T C T C A G G A C T
p-value:1e-529
log p-value:-1.218e+03
Information Content per bp:1.584
Number of Target Sequences with motif17200.0
Percentage of Target Sequences with motif26.64%
Number of Background Sequences with motif11601.5
Percentage of Background Sequences with motif18.72%
Average Position of motif in Targets99.6 +/- 55.1bp
Average Position of motif in Background100.8 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF1A/MA1106.1/Jaspar

Match Rank:1
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--ACGTRCTG
GTACGTGCCC
 A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-ACGTRCTG
TACGTGCV-
 A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ACGTRCTG
RTACGTGC--
 A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--ACGTRCTG
GGACGTGC--
 A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----ACGTRCTG
GGGTACGTGC--
 A C G T A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

SOHLH2/MA1560.1/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ACGTRCTG
CGCACGTGCA-
 A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
G A T C A C T G G A T C C T G A A T G C C A T G G A C T C T A G T G A C T C G A A C G T

HES2/MA0616.2/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACGTRCTG
GGCACGTGCC-
 A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
T A C G T C A G A G T C C T G A A G T C C T A G A G C T A C T G G T A C T A G C A C G T

MYC/MA0147.3/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACGTRCTG
GGCCACGTGCCC
 A C G T A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
T A C G T A C G T A G C T G A C C T G A A G T C T C A G A G C T A T C G A T G C A G T C A T G C

MNT/MA0825.1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---ACGTRCTG
ACCACGTGCC-
 A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C A C G T

HES6/MA1493.1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACGTRCTG
AACACGTGCC-
 A C G T A C G T A C G T C T G A A G T C T C A G G A C T C T A G G A T C A G C T A T C G
C T G A C G T A A G T C T G C A A T G C T C A G G C A T A T C G A T G C T G A C A C G T