Information for 8-VAGGWGGRARRA (Motif 7)

T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
Reverse Opposite:
G A C T A G C T A G C T G A C T G A T C A G T C G A T C C G A T A T G C G A T C G C A T A T G C
p-value:1e-3748
log p-value:-8.630e+03
Information Content per bp:1.561
Number of Target Sequences with motif44494.0
Percentage of Target Sequences with motif68.92%
Number of Background Sequences with motif109275.8
Percentage of Background Sequences with motif40.40%
Average Position of motif in Targets264.0 +/- 196.0bp
Average Position of motif in Background238.5 +/- 294.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PF10_0068(RRM)/Plasmodium_falciparum-RNCMPT00199-PBM/HughesRNA

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:VAGGWGGRARRA
-NGGAGGAA---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T C G A T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T

PCBP3(KH)/Mus_musculus-RNCMPT00215-PBM/HughesRNA

Match Rank:2
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:VAGGWGGRARRA
----AGGGAAAG
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C G T A C G T C G T A A C T G A C T G C T A G C G T A C G T A C T G A C A T G

SF2(RRM)/Drosophila_melanogaster-RNCMPT00066-PBM/HughesRNA

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:VAGGWGGRARRA
-NGGAGGA----
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T C T G A A C T G C T A G G C T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T

NCU02404(RRM)/Neurospora_crassa-RNCMPT00238-PBM/HughesRNA

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:VAGGWGGRARRA
--GGAGGAA---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C T G A C T G C G T A A C T G A C T G C G T A C T G A A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00108-PBM/HughesRNA

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:VAGGWGGRARRA
--GGAGGAN---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T G A T C A G A C G T A C G T A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00109-PBM/HughesRNA

Match Rank:6
Score:0.71
Offset:2
Orientation:forward strand
Alignment:VAGGWGGRARRA
--GGAGGAN---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T G A T C G A A C G T A C G T A C G T

TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-VAGGWGGRARRA--
NNDDGAGGAGGWNNN
 A C G T T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A A C G T A C G T
C T A G T C A G C T G A C T G A C T A G C T G A C A T G C A T G C T G A C T A G C T A G C G T A C T A G C G T A G T C A

ZNF75D/MA1601.1/Jaspar

Match Rank:8
Score:0.71
Offset:1
Orientation:forward strand
Alignment:VAGGWGGRARRA
-ATGTGGGAAA-
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T T C G A C A G T C T A G G A C T T C A G C A T G A T C G G T C A T C G A C T G A A C G T

SRSF1(RRM)/Homo_sapiens-RNCMPT00106-PBM/HughesRNA

Match Rank:9
Score:0.71
Offset:2
Orientation:forward strand
Alignment:VAGGWGGRARRA
--GGAGGAN---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C T G C T A G C G T A A C T G A C T G C T G A T G A C A C G T A C G T A C G T

B52(RRM)/Drosophila_melanogaster-RNCMPT00134-PBM/HughesRNA

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:VAGGWGGRARRA
--GGAGGGN---
 T A C G C G T A C T A G T A C G C G T A C T A G A C T G C T A G C T G A C T G A T C G A C T G A
A C G T A C G T A C T G A C T G C G T A A T C G A C T G C T A G T C A G A C G T A C G T A C G T