Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 64564)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 270528)	% of Background Sequences with Motif
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-6546	-1.507e+04	0.0000	37731.0	58.44%	60598.2	22.40%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-6505	-1.498e+04	0.0000	37717.0	58.42%	60807.4	22.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-6420	-1.478e+04	0.0000	40857.0	63.29%	72348.8	26.75%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-6023	-1.387e+04	0.0000	30778.0	47.67%	42055.3	15.55%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4977	-1.146e+04	0.0000	30608.0	47.41%	47877.5	17.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4852	-1.117e+04	0.0000	39439.0	61.09%	78838.6	29.15%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-4553	-1.049e+04	0.0000	11596.0	17.96%	5268.0	1.95%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-4277	-9.849e+03	0.0000	9673.0	14.98%	3269.0	1.21%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-3855	-8.879e+03	0.0000	12151.0	18.82%	8046.7	2.97%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-3806	-8.765e+03	0.0000	18217.0	28.22%	20885.6	7.72%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-3578	-8.240e+03	0.0000	12800.0	19.83%	10168.1	3.76%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-3549	-8.174e+03	0.0000	45392.0	70.31%	115240.1	42.61%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-3319	-7.644e+03	0.0000	26569.0	41.15%	47264.0	17.47%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-3297	-7.594e+03	0.0000	8296.0	12.85%	3518.5	1.30%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-3170	-7.301e+03	0.0000	52837.0	81.84%	154824.3	57.24%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-2917	-6.719e+03	0.0000	25664.0	39.75%	47722.3	17.64%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2799	-6.445e+03	0.0000	29319.0	45.41%	60878.1	22.51%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2654	-6.112e+03	0.0000	30739.0	47.61%	67273.9	24.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2654	-6.111e+03	0.0000	34178.0	52.94%	79798.9	29.50%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2533	-5.833e+03	0.0000	41846.0	64.82%	111710.4	41.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2416	-5.565e+03	0.0000	15208.0	23.56%	21283.2	7.87%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2384	-5.492e+03	0.0000	31076.0	48.14%	71380.0	26.39%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2376	-5.471e+03	0.0000	25311.0	39.21%	51536.1	19.05%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2140	-4.928e+03	0.0000	46122.0	71.44%	135634.2	50.15%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2083	-4.798e+03	0.0000	17402.0	26.96%	29704.7	10.98%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2079	-4.788e+03	0.0000	20048.0	31.05%	37612.9	13.91%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2077	-4.783e+03	0.0000	7209.0	11.17%	5205.1	1.92%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1859	-4.281e+03	0.0000	18730.0	29.01%	35620.9	13.17%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1825	-4.204e+03	0.0000	27050.0	41.90%	63508.6	23.48%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1820	-4.192e+03	0.0000	54368.0	84.21%	180456.4	66.72%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1725	-3.973e+03	0.0000	14448.0	22.38%	24226.5	8.96%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1716	-3.952e+03	0.0000	6289.0	9.74%	4839.0	1.79%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-1681	-3.872e+03	0.0000	5501.0	8.52%	3591.7	1.33%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1654	-3.811e+03	0.0000	19533.0	30.26%	40167.3	14.85%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1642	-3.783e+03	0.0000	15837.0	24.53%	28935.2	10.70%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1637	-3.771e+03	0.0000	14196.0	21.99%	24239.9	8.96%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1632	-3.759e+03	0.0000	19758.0	30.60%	41125.8	15.20%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1632	-3.758e+03	0.0000	15168.0	23.49%	27073.6	10.01%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1486	-3.422e+03	0.0000	22623.0	35.04%	52328.0	19.35%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1466	-3.377e+03	0.0000	13203.0	20.45%	22886.9	8.46%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1417	-3.263e+03	0.0000	22624.0	35.04%	53208.3	19.67%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1366	-3.147e+03	0.0000	9697.0	15.02%	14205.4	5.25%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1337	-3.081e+03	0.0000	17465.0	27.05%	37047.4	13.70%
SeqBias: CA-repeat	CACACACACA	1e-1292	-2.977e+03	0.0000	51600.0	79.93%	174834.3	64.64%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1243	-2.863e+03	0.0000	8985.0	13.92%	13263.9	4.90%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-1226	-2.825e+03	0.0000	14896.0	23.07%	30218.8	11.17%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1215	-2.798e+03	0.0000	17659.0	27.35%	39121.8	14.46%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1207	-2.779e+03	0.0000	19835.0	30.72%	46451.8	17.17%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1174	-2.705e+03	0.0000	16326.0	25.29%	35301.1	13.05%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1172	-2.699e+03	0.0000	16065.0	24.88%	34502.1	12.76%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1164	-2.682e+03	0.0000	10391.0	16.10%	17618.7	6.51%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1163	-2.678e+03	0.0000	17835.0	27.63%	40347.4	14.92%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-1142	-2.631e+03	0.0000	49870.0	77.25%	169180.5	62.55%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1118	-2.576e+03	0.0000	18172.0	28.15%	42036.1	15.54%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1117	-2.572e+03	0.0000	18578.0	28.78%	43419.9	16.05%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1074	-2.475e+03	0.0000	11345.0	17.57%	21142.8	7.82%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1066	-2.456e+03	0.0000	6097.0	9.44%	7409.2	2.74%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1057	-2.434e+03	0.0000	10721.0	16.61%	19513.4	7.21%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-1053	-2.427e+03	0.0000	28921.0	44.80%	81701.8	30.21%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1033	-2.379e+03	0.0000	25094.0	38.87%	67672.8	25.02%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1032	-2.378e+03	0.0000	11348.0	17.58%	21568.4	7.97%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1030	-2.372e+03	0.0000	12177.0	18.86%	24054.8	8.89%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1027	-2.365e+03	0.0000	12136.0	18.80%	23964.7	8.86%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1018	-2.345e+03	0.0000	11981.0	18.56%	23590.0	8.72%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1014	-2.337e+03	0.0000	7390.0	11.45%	10853.8	4.01%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-987	-2.274e+03	0.0000	15495.0	24.00%	34945.9	12.92%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-980	-2.258e+03	0.0000	15135.0	23.44%	33866.8	12.52%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-976	-2.249e+03	0.0000	11669.0	18.07%	23098.2	8.54%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-968	-2.230e+03	0.0000	17238.0	26.70%	40958.1	15.14%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-961	-2.213e+03	0.0000	3160.0	4.89%	2032.5	0.75%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-902	-2.079e+03	0.0000	9155.0	14.18%	16517.6	6.11%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-902	-2.079e+03	0.0000	3115.0	4.83%	2147.0	0.79%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-880	-2.028e+03	0.0000	9233.0	14.30%	16949.1	6.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-878	-2.023e+03	0.0000	11069.0	17.15%	22369.6	8.27%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-868	-2.000e+03	0.0000	5259.0	8.15%	6658.2	2.46%
Tal1	CATCTG	1e-865	-1.992e+03	0.0000	17485.0	27.08%	43309.9	16.01%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-858	-1.977e+03	0.0000	33701.0	52.20%	104329.4	38.57%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-856	-1.971e+03	0.0000	10876.0	16.85%	22036.7	8.15%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-853	-1.964e+03	0.0000	39805.0	61.66%	129837.9	48.00%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-852	-1.963e+03	0.0000	26059.0	40.36%	74507.6	27.55%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-829	-1.909e+03	0.0000	19730.0	30.56%	51711.3	19.12%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-823	-1.896e+03	0.0000	8824.0	13.67%	16343.9	6.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-780	-1.797e+03	0.0000	9949.0	15.41%	20093.0	7.43%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-764	-1.759e+03	0.0000	7287.0	11.29%	12596.0	4.66%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-760	-1.750e+03	0.0000	19992.0	30.97%	53846.6	19.91%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-758	-1.747e+03	0.0000	11392.0	17.65%	24781.3	9.16%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-758	-1.747e+03	0.0000	8801.0	13.63%	16934.7	6.26%
REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer	TVCTCTGTTT	1e-757	-1.744e+03	0.0000	9244.0	14.32%	18249.7	6.75%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-745	-1.717e+03	0.0000	12248.0	18.97%	27664.9	10.23%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-738	-1.699e+03	0.0000	10190.0	15.78%	21314.7	7.88%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-726	-1.674e+03	0.0000	8606.0	13.33%	16700.3	6.17%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-722	-1.662e+03	0.0000	3458.0	5.36%	3514.4	1.30%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-717	-1.651e+03	0.0000	9373.0	14.52%	19083.2	7.06%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-713	-1.643e+03	0.0000	6719.0	10.41%	11497.6	4.25%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-712	-1.640e+03	0.0000	12865.0	19.93%	30123.7	11.14%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-694	-1.599e+03	0.0000	38410.0	59.50%	127546.6	47.16%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-690	-1.590e+03	0.0000	24849.0	38.49%	73162.4	27.05%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-680	-1.567e+03	0.0000	14076.0	21.80%	34610.6	12.80%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-637	-1.468e+03	0.0000	3657.0	5.66%	4385.4	1.62%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-634	-1.462e+03	0.0000	7121.0	11.03%	13368.8	4.94%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-626	-1.442e+03	0.0000	32577.0	50.46%	105038.7	38.83%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-617	-1.421e+03	0.0000	12955.0	20.07%	31847.3	11.77%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e-612	-1.409e+03	0.0000	9378.0	14.53%	20370.2	7.53%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-611	-1.409e+03	0.0000	18579.0	28.78%	51533.8	19.05%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-596	-1.373e+03	0.0000	27105.0	41.98%	83971.5	31.05%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-590	-1.360e+03	0.0000	15153.0	23.47%	39790.2	14.71%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e-588	-1.356e+03	0.0000	10375.0	16.07%	23828.7	8.81%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-576	-1.327e+03	0.0000	13699.0	21.22%	35030.7	12.95%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-573	-1.321e+03	0.0000	49177.0	76.17%	178225.9	65.89%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-568	-1.310e+03	0.0000	38845.0	60.17%	132587.9	49.02%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-566	-1.304e+03	0.0000	7530.0	11.66%	15309.8	5.66%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-562	-1.295e+03	0.0000	5852.0	9.06%	10512.9	3.89%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-561	-1.294e+03	0.0000	16528.0	25.60%	45165.0	16.70%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-549	-1.266e+03	0.0000	6367.0	9.86%	12092.9	4.47%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-544	-1.254e+03	0.0000	11873.0	18.39%	29395.8	10.87%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-544	-1.254e+03	0.0000	22947.0	35.54%	69173.9	25.57%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-536	-1.235e+03	0.0000	5813.0	9.00%	10660.9	3.94%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-530	-1.222e+03	0.0000	30893.0	47.85%	100663.0	37.22%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-528	-1.218e+03	0.0000	11020.0	17.07%	26820.1	9.92%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-528	-1.217e+03	0.0000	17970.0	27.84%	51022.1	18.86%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-526	-1.213e+03	0.0000	52245.0	80.93%	193851.0	71.67%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-519	-1.197e+03	0.0000	5656.0	8.76%	10382.4	3.84%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-517	-1.191e+03	0.0000	5338.0	8.27%	9524.5	3.52%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-506	-1.167e+03	0.0000	5559.0	8.61%	10243.6	3.79%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-503	-1.159e+03	0.0000	6819.0	10.56%	13927.9	5.15%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-501	-1.156e+03	0.0000	7725.0	11.97%	16687.4	6.17%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-500	-1.152e+03	0.0000	18728.0	29.01%	54412.0	20.12%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-496	-1.143e+03	0.0000	5501.0	8.52%	10183.0	3.76%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-496	-1.143e+03	0.0000	4052.0	6.28%	6282.1	2.32%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-495	-1.142e+03	0.0000	15262.0	23.64%	41966.3	15.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-493	-1.137e+03	0.0000	32016.0	49.59%	106221.9	39.27%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-490	-1.130e+03	0.0000	5447.0	8.44%	10091.0	3.73%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-490	-1.129e+03	0.0000	7987.0	12.37%	17648.4	6.52%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-474	-1.092e+03	0.0000	36990.0	57.30%	127383.7	47.10%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-462	-1.065e+03	0.0000	4345.0	6.73%	7333.9	2.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-460	-1.061e+03	0.0000	34505.0	53.45%	117392.4	43.40%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-458	-1.055e+03	0.0000	26722.0	41.39%	85988.6	31.79%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-454	-1.046e+03	0.0000	12409.0	19.22%	32798.4	12.13%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-451	-1.040e+03	0.0000	14097.0	21.84%	38740.8	14.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-450	-1.037e+03	0.0000	9439.0	14.62%	22869.4	8.46%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-446	-1.027e+03	0.0000	11771.0	18.23%	30753.3	11.37%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-436	-1.005e+03	0.0000	13912.0	21.55%	38394.0	14.19%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-435	-1.002e+03	0.0000	26425.0	40.93%	85451.2	31.59%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-432	-9.959e+02	0.0000	16342.0	25.31%	47197.9	17.45%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-431	-9.940e+02	0.0000	5752.0	8.91%	11609.2	4.29%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-422	-9.732e+02	0.0000	10577.0	16.38%	27123.1	10.03%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-420	-9.687e+02	0.0000	5683.0	8.80%	11534.9	4.26%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-414	-9.551e+02	0.0000	8166.0	12.65%	19297.4	7.13%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-409	-9.429e+02	0.0000	11693.0	18.11%	31178.0	11.53%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-402	-9.271e+02	0.0000	9928.0	15.38%	25294.6	9.35%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-399	-9.188e+02	0.0000	7552.0	11.70%	17570.3	6.50%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-393	-9.067e+02	0.0000	9591.0	14.86%	24321.7	8.99%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-391	-9.015e+02	0.0000	5553.0	8.60%	11498.5	4.25%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-387	-8.915e+02	0.0000	10114.0	15.67%	26200.7	9.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-386	-8.891e+02	0.0000	9084.0	14.07%	22764.3	8.42%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-377	-8.692e+02	0.0000	16099.0	24.94%	47599.3	17.60%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-376	-8.669e+02	0.0000	18894.0	29.27%	58018.2	21.45%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-373	-8.597e+02	0.0000	8214.0	12.72%	20111.6	7.44%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-372	-8.574e+02	0.0000	14110.0	21.86%	40489.4	14.97%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-371	-8.555e+02	0.0000	22617.0	35.03%	72377.1	26.76%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-370	-8.539e+02	0.0000	15425.0	23.89%	45292.1	16.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-363	-8.372e+02	0.0000	4566.0	7.07%	8929.2	3.30%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-362	-8.343e+02	0.0000	3114.0	4.82%	4959.6	1.83%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-361	-8.326e+02	0.0000	4487.0	6.95%	8724.3	3.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-358	-8.256e+02	0.0000	3531.0	5.47%	6091.7	2.25%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-354	-8.154e+02	0.0000	22448.0	34.77%	72229.7	26.70%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-352	-8.119e+02	0.0000	26258.0	40.67%	87237.5	32.25%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-348	-8.030e+02	0.0000	7754.0	12.01%	19014.8	7.03%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-348	-8.017e+02	0.0000	5065.0	7.85%	10576.2	3.91%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-344	-7.941e+02	0.0000	12311.0	19.07%	34681.8	12.82%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-344	-7.932e+02	0.0000	55197.0	85.50%	213005.2	78.75%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-341	-7.860e+02	0.0000	12337.0	19.11%	34851.0	12.88%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-334	-7.700e+02	0.0000	20787.0	32.20%	66396.1	24.55%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-334	-7.691e+02	0.0000	8233.0	12.75%	20848.0	7.71%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-331	-7.642e+02	0.0000	12331.0	19.10%	35044.2	12.96%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-330	-7.608e+02	0.0000	6709.0	10.39%	15926.6	5.89%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-326	-7.528e+02	0.0000	4819.0	7.46%	10106.4	3.74%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-325	-7.504e+02	0.0000	13677.0	21.19%	40022.3	14.80%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-324	-7.474e+02	0.0000	8219.0	12.73%	20970.5	7.75%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-319	-7.361e+02	0.0000	13849.0	21.45%	40800.0	15.08%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-317	-7.306e+02	0.0000	2592.0	4.01%	3991.9	1.48%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-311	-7.163e+02	0.0000	2823.0	4.37%	4637.0	1.71%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-309	-7.134e+02	0.0000	6561.0	10.16%	15778.9	5.83%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-307	-7.089e+02	0.0000	14792.0	22.91%	44552.2	16.47%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-302	-6.973e+02	0.0000	6705.0	10.39%	16359.9	6.05%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e-301	-6.944e+02	0.0000	6048.0	9.37%	14264.4	5.27%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-299	-6.895e+02	0.0000	10570.0	16.37%	29543.3	10.92%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-298	-6.881e+02	0.0000	7746.0	12.00%	19860.9	7.34%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-298	-6.871e+02	0.0000	54758.0	84.82%	212279.4	78.48%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-297	-6.840e+02	0.0000	12351.0	19.13%	35935.5	13.29%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-289	-6.667e+02	0.0000	10287.0	15.93%	28769.2	10.64%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-286	-6.598e+02	0.0000	33681.0	52.17%	119705.9	44.26%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-284	-6.554e+02	0.0000	9290.0	14.39%	25398.4	9.39%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-284	-6.550e+02	0.0000	6823.0	10.57%	17058.1	6.31%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-283	-6.533e+02	0.0000	28052.0	43.45%	96741.3	35.77%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-282	-6.515e+02	0.0000	836.0	1.29%	445.8	0.16%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-279	-6.441e+02	0.0000	17705.0	27.42%	56252.3	20.80%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-272	-6.278e+02	0.0000	2813.0	4.36%	4959.9	1.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-271	-6.256e+02	0.0000	1355.0	2.10%	1414.9	0.52%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-265	-6.110e+02	0.0000	1187.0	1.84%	1109.6	0.41%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-264	-6.087e+02	0.0000	11643.0	18.03%	34196.2	12.64%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-261	-6.018e+02	0.0000	7265.0	11.25%	18955.0	7.01%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-260	-6.005e+02	0.0000	32522.0	50.38%	115882.2	42.84%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-257	-5.940e+02	0.0000	5252.0	8.14%	12413.4	4.59%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-251	-5.787e+02	0.0000	2794.0	4.33%	5117.1	1.89%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-250	-5.772e+02	0.0000	14269.0	22.10%	44195.9	16.34%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-248	-5.725e+02	0.0000	10950.0	16.96%	32099.3	11.87%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-248	-5.713e+02	0.0000	7539.0	11.68%	20144.4	7.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-247	-5.702e+02	0.0000	26156.0	40.51%	90435.8	33.44%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-247	-5.700e+02	0.0000	30583.0	47.37%	108414.3	40.08%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-246	-5.685e+02	0.0000	10267.0	15.90%	29696.7	10.98%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-245	-5.663e+02	0.0000	2843.0	4.40%	5309.3	1.96%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-244	-5.629e+02	0.0000	4765.0	7.38%	11081.6	4.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-242	-5.577e+02	0.0000	16221.0	25.13%	51784.7	19.15%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-238	-5.495e+02	0.0000	36685.0	56.82%	134169.4	49.60%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-238	-5.489e+02	0.0000	8919.0	13.82%	25130.3	9.29%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-236	-5.446e+02	0.0000	4690.0	7.26%	10967.3	4.05%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-235	-5.413e+02	0.0000	28984.0	44.90%	102371.9	37.85%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-234	-5.410e+02	0.0000	14900.0	23.08%	47025.3	17.39%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-234	-5.408e+02	0.0000	18769.0	29.07%	61777.0	22.84%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-234	-5.402e+02	0.0000	2949.0	4.57%	5732.0	2.12%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-234	-5.389e+02	0.0000	14311.0	22.17%	44846.9	16.58%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-233	-5.367e+02	0.0000	25279.0	39.16%	87475.8	32.34%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e-232	-5.343e+02	0.0000	12494.0	19.35%	38163.0	14.11%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-231	-5.331e+02	0.0000	41847.0	64.82%	156509.3	57.86%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-231	-5.326e+02	0.0000	23285.0	36.07%	79593.6	29.43%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-230	-5.316e+02	0.0000	1802.0	2.79%	2686.9	0.99%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-229	-5.280e+02	0.0000	1281.0	1.98%	1482.6	0.55%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-224	-5.173e+02	0.0000	4656.0	7.21%	11046.0	4.08%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-224	-5.167e+02	0.0000	13788.0	21.36%	43184.3	15.97%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-221	-5.108e+02	0.0000	2420.0	3.75%	4384.6	1.62%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-221	-5.092e+02	0.0000	32762.0	50.75%	118490.0	43.81%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-216	-4.995e+02	0.0000	6176.0	9.57%	16160.1	5.97%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-214	-4.941e+02	0.0000	1310.0	2.03%	1632.2	0.60%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-208	-4.807e+02	0.0000	7106.0	11.01%	19494.9	7.21%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-207	-4.786e+02	0.0000	27608.0	42.76%	97892.2	36.19%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-207	-4.776e+02	0.0000	8486.0	13.14%	24343.8	9.00%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-207	-4.768e+02	0.0000	16785.0	26.00%	55103.4	20.37%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-206	-4.762e+02	0.0000	27192.0	42.12%	96249.7	35.59%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-206	-4.756e+02	0.0000	32614.0	50.52%	118504.9	43.81%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-200	-4.605e+02	0.0000	5900.0	9.14%	15570.0	5.76%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-198	-4.563e+02	0.0000	11044.0	17.11%	33812.6	12.50%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-197	-4.542e+02	0.0000	32838.0	50.87%	119848.9	44.31%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-196	-4.520e+02	0.0000	4125.0	6.39%	9813.2	3.63%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-195	-4.500e+02	0.0000	25176.0	39.00%	88587.9	32.75%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-195	-4.498e+02	0.0000	2367.0	3.67%	4513.9	1.67%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-195	-4.491e+02	0.0000	2852.0	4.42%	5917.0	2.19%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-193	-4.448e+02	0.0000	10883.0	16.86%	33368.2	12.34%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-192	-4.433e+02	0.0000	10192.0	15.79%	30861.6	11.41%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-192	-4.433e+02	0.0000	1502.0	2.33%	2236.7	0.83%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-185	-4.280e+02	0.0000	26271.0	40.69%	93421.1	34.54%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-185	-4.263e+02	0.0000	4863.0	7.53%	12400.7	4.58%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-184	-4.238e+02	0.0000	10168.0	15.75%	31017.1	11.47%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-183	-4.235e+02	0.0000	38132.0	59.07%	142705.1	52.76%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-183	-4.223e+02	0.0000	26215.0	40.61%	93305.7	34.50%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-180	-4.166e+02	0.0000	26172.0	40.54%	93240.6	34.47%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-180	-4.160e+02	0.0000	32696.0	50.65%	120022.1	44.37%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-180	-4.157e+02	0.0000	16005.0	24.79%	53065.7	19.62%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-174	-4.016e+02	0.0000	3282.0	5.08%	7504.2	2.77%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-171	-3.950e+02	0.0000	28559.0	44.24%	103390.2	38.22%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-164	-3.783e+02	0.0000	15739.0	24.38%	52656.3	19.47%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-163	-3.775e+02	0.0000	7092.0	10.99%	20505.1	7.58%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-160	-3.701e+02	0.0000	12497.0	19.36%	40418.5	14.94%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-160	-3.698e+02	0.0000	18859.0	29.21%	64953.9	24.01%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-160	-3.691e+02	0.0000	1814.0	2.81%	3341.2	1.24%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-160	-3.687e+02	0.0000	2234.0	3.46%	4536.7	1.68%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-160	-3.686e+02	0.0000	35282.0	54.65%	131832.5	48.74%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-159	-3.670e+02	0.0000	2703.0	4.19%	5942.2	2.20%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-158	-3.661e+02	0.0000	2855.0	4.42%	6412.3	2.37%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-158	-3.654e+02	0.0000	43877.0	67.96%	168602.7	62.33%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-157	-3.633e+02	0.0000	4604.0	7.13%	12070.3	4.46%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-157	-3.632e+02	0.0000	37488.0	58.07%	141256.1	52.22%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-155	-3.583e+02	0.0000	10749.0	16.65%	34044.1	12.59%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-154	-3.559e+02	0.0000	4784.0	7.41%	12740.2	4.71%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-154	-3.557e+02	0.0000	9843.0	15.25%	30725.0	11.36%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-153	-3.539e+02	0.0000	2588.0	4.01%	5672.4	2.10%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-153	-3.528e+02	0.0000	8259.0	12.79%	24973.1	9.23%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-153	-3.525e+02	0.0000	38205.0	59.18%	144535.9	53.44%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-152	-3.505e+02	0.0000	8980.0	13.91%	27625.3	10.21%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-151	-3.492e+02	0.0000	10538.0	16.32%	33390.8	12.35%
SeqBias: TA-repeat	TATATATATA	1e-150	-3.474e+02	0.0000	45274.0	70.13%	175076.0	64.73%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-150	-3.468e+02	0.0000	1055.0	1.63%	1459.0	0.54%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-150	-3.454e+02	0.0000	3933.0	6.09%	9997.6	3.70%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-148	-3.427e+02	0.0000	41771.0	64.70%	159997.0	59.15%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-147	-3.403e+02	0.0000	1324.0	2.05%	2147.7	0.79%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-147	-3.399e+02	0.0000	7950.0	12.31%	24017.2	8.88%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-146	-3.375e+02	0.0000	25787.0	39.94%	93300.3	34.49%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-145	-3.341e+02	0.0000	2060.0	3.19%	4212.6	1.56%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-143	-3.300e+02	0.0000	3455.0	5.35%	8560.6	3.16%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-143	-3.294e+02	0.0000	1543.0	2.39%	2772.9	1.03%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-141	-3.268e+02	0.0000	3431.0	5.31%	8507.5	3.15%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-140	-3.229e+02	0.0000	15211.0	23.56%	51583.4	19.07%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-139	-3.213e+02	0.0000	4075.0	6.31%	10671.3	3.95%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-139	-3.204e+02	0.0000	6303.0	9.76%	18359.7	6.79%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-139	-3.203e+02	0.0000	3693.0	5.72%	9414.9	3.48%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-138	-3.199e+02	0.0000	29620.0	45.88%	109376.0	40.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-138	-3.192e+02	0.0000	1013.0	1.57%	1442.4	0.53%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-138	-3.190e+02	0.0000	27898.0	43.21%	102321.5	37.83%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-137	-3.167e+02	0.0000	3233.0	5.01%	7945.4	2.94%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-136	-3.140e+02	0.0000	9457.0	14.65%	29887.6	11.05%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-136	-3.137e+02	0.0000	1292.0	2.00%	2165.3	0.80%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-135	-3.116e+02	0.0000	3028.0	4.69%	7326.0	2.71%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-134	-3.100e+02	0.0000	9425.0	14.60%	29827.4	11.03%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-134	-3.086e+02	0.0000	10008.0	15.50%	32017.8	11.84%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-133	-3.080e+02	0.0000	46277.0	71.68%	180338.7	66.67%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-132	-3.045e+02	0.0000	12552.0	19.44%	41686.3	15.41%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-131	-3.038e+02	0.0000	2639.0	4.09%	6150.8	2.27%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-131	-3.031e+02	0.0000	19593.0	30.35%	69161.1	25.57%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-130	-2.998e+02	0.0000	26407.0	40.90%	96668.7	35.74%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-130	-2.998e+02	0.0000	41019.0	63.54%	157766.8	58.33%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-129	-2.973e+02	0.0000	40141.0	62.18%	154069.6	56.96%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-128	-2.954e+02	0.0000	891.0	1.38%	1224.7	0.45%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-126	-2.924e+02	0.0000	1191.0	1.84%	1983.4	0.73%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-126	-2.905e+02	0.0000	29131.0	45.12%	108054.6	39.95%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-125	-2.897e+02	0.0000	6929.0	10.73%	20969.1	7.75%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-125	-2.895e+02	0.0000	588.0	0.91%	576.6	0.21%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-125	-2.892e+02	0.0000	5415.0	8.39%	15582.3	5.76%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-125	-2.882e+02	0.0000	11741.0	18.19%	38876.1	14.37%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-124	-2.876e+02	0.0000	912.0	1.41%	1298.5	0.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-122	-2.823e+02	0.0000	762.0	1.18%	963.9	0.36%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-121	-2.797e+02	0.0000	10677.0	16.54%	34985.8	12.93%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-121	-2.796e+02	0.0000	2268.0	3.51%	5158.7	1.91%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-120	-2.769e+02	0.0000	3615.0	5.60%	9527.9	3.52%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-116	-2.679e+02	0.0000	43197.0	66.91%	167917.0	62.08%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-114	-2.628e+02	0.0000	2368.0	3.67%	5583.5	2.06%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-113	-2.612e+02	0.0000	2004.0	3.10%	4465.9	1.65%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-113	-2.604e+02	0.0000	2254.0	3.49%	5242.5	1.94%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-112	-2.589e+02	0.0000	4788.0	7.42%	13724.4	5.07%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-112	-2.588e+02	0.0000	1293.0	2.00%	2399.2	0.89%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-111	-2.572e+02	0.0000	10871.0	16.84%	36103.8	13.35%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-111	-2.562e+02	0.0000	24629.0	38.15%	90472.4	33.45%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-110	-2.554e+02	0.0000	3691.0	5.72%	9981.2	3.69%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-108	-2.505e+02	0.0000	29601.0	45.85%	110997.1	41.04%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-107	-2.473e+02	0.0000	54421.0	84.30%	217983.7	80.59%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-106	-2.457e+02	0.0000	4648.0	7.20%	13381.1	4.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-106	-2.446e+02	0.0000	3652.0	5.66%	9953.3	3.68%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-104	-2.411e+02	0.0000	6817.0	10.56%	21217.1	7.84%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-104	-2.407e+02	0.0000	39858.0	61.74%	154308.8	57.05%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-103	-2.377e+02	0.0000	46853.0	72.57%	184555.4	68.23%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-103	-2.375e+02	0.0000	23473.0	36.36%	86246.7	31.89%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-102	-2.350e+02	0.0000	29385.0	45.52%	110516.5	40.86%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-100	-2.313e+02	0.0000	1020.0	1.58%	1775.4	0.66%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-99	-2.301e+02	0.0000	1319.0	2.04%	2610.4	0.97%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-99	-2.301e+02	0.0000	1319.0	2.04%	2610.4	0.97%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-99	-2.281e+02	0.0000	8398.0	13.01%	27269.2	10.08%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-98	-2.268e+02	0.0000	1194.0	1.85%	2272.2	0.84%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-97	-2.237e+02	0.0000	3614.0	5.60%	10032.8	3.71%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-95	-2.196e+02	0.0000	3556.0	5.51%	9875.6	3.65%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-95	-2.194e+02	0.0000	12097.0	18.74%	41515.8	15.35%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-95	-2.194e+02	0.0000	2981.0	4.62%	7927.8	2.93%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-94	-2.176e+02	0.0000	13775.0	21.34%	48072.7	17.77%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-93	-2.146e+02	0.0000	21212.0	32.86%	77690.9	28.72%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-92	-2.138e+02	0.0000	440.0	0.68%	438.9	0.16%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-92	-2.120e+02	0.0000	1182.0	1.83%	2310.2	0.85%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-91	-2.114e+02	0.0000	897.0	1.39%	1529.8	0.57%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-90	-2.089e+02	0.0000	3880.0	6.01%	11111.9	4.11%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-90	-2.085e+02	0.0000	1722.0	2.67%	3938.7	1.46%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-90	-2.079e+02	0.0000	5985.0	9.27%	18653.9	6.90%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-89	-2.070e+02	0.0000	6301.0	9.76%	19823.4	7.33%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-89	-2.067e+02	0.0000	850.0	1.32%	1424.9	0.53%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-88	-2.031e+02	0.0000	21500.0	33.30%	79154.0	29.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-87	-2.025e+02	0.0000	6003.0	9.30%	18797.1	6.95%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-87	-2.021e+02	0.0000	4527.0	7.01%	13471.7	4.98%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-86	-1.989e+02	0.0000	2477.0	3.84%	6433.9	2.38%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-82	-1.902e+02	0.0000	6368.0	9.86%	20327.1	7.52%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-82	-1.895e+02	0.0000	25308.0	39.20%	95026.5	35.13%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-81	-1.881e+02	0.0000	13537.0	20.97%	47800.9	17.67%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-80	-1.854e+02	0.0000	2712.0	4.20%	7343.0	2.71%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-79	-1.829e+02	0.0000	926.0	1.43%	1730.3	0.64%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-77	-1.779e+02	0.0000	33008.0	51.13%	127241.7	47.04%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-76	-1.752e+02	0.0000	1536.0	2.38%	3585.3	1.33%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-75	-1.735e+02	0.0000	23604.0	36.56%	88536.5	32.73%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-75	-1.728e+02	0.0000	4163.0	6.45%	12547.6	4.64%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-74	-1.721e+02	0.0000	39179.0	60.69%	153427.6	56.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-73	-1.694e+02	0.0000	3599.0	5.57%	10585.8	3.91%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-73	-1.687e+02	0.0000	28872.0	44.72%	110331.3	40.79%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-72	-1.671e+02	0.0000	7662.0	11.87%	25566.2	9.45%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-72	-1.668e+02	0.0000	1202.0	1.86%	2615.6	0.97%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-72	-1.665e+02	0.0000	14971.0	23.19%	53984.9	19.96%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-71	-1.656e+02	0.0000	2234.0	3.46%	5923.3	2.19%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-70	-1.620e+02	0.0000	732.0	1.13%	1292.8	0.48%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-68	-1.583e+02	0.0000	2995.0	4.64%	8598.4	3.18%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-68	-1.574e+02	0.0000	10901.0	16.89%	38214.6	14.13%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-68	-1.566e+02	0.0000	2424.0	3.75%	6650.9	2.46%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-67	-1.544e+02	0.0000	3562.0	5.52%	10641.5	3.93%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-65	-1.501e+02	0.0000	9646.0	14.94%	33511.7	12.39%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-64	-1.474e+02	0.0000	6882.0	10.66%	22988.0	8.50%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-63	-1.464e+02	0.0000	28378.0	43.96%	109023.9	40.31%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-60	-1.404e+02	0.0000	10856.0	16.82%	38444.3	14.21%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-60	-1.402e+02	0.0000	9312.0	14.42%	32442.3	11.99%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-60	-1.393e+02	0.0000	866.0	1.34%	1777.3	0.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-60	-1.389e+02	0.0000	4625.0	7.16%	14712.7	5.44%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-60	-1.386e+02	0.0000	4569.0	7.08%	14510.9	5.36%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-59	-1.379e+02	0.0000	19408.0	30.06%	72585.9	26.84%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-59	-1.378e+02	0.0000	1931.0	2.99%	5169.8	1.91%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-59	-1.371e+02	0.0000	2215.0	3.43%	6137.2	2.27%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-59	-1.360e+02	0.0000	940.0	1.46%	2014.9	0.74%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-58	-1.350e+02	0.0000	1730.0	2.68%	4525.1	1.67%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-58	-1.349e+02	0.0000	12183.0	18.87%	43792.2	16.19%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-58	-1.341e+02	0.0000	4563.0	7.07%	14561.6	5.38%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-58	-1.336e+02	0.0000	2182.0	3.38%	6060.2	2.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-57	-1.334e+02	0.0000	2911.0	4.51%	8598.6	3.18%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-57	-1.329e+02	0.0000	28051.0	43.45%	108142.1	39.98%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-54	-1.264e+02	0.0000	1104.0	1.71%	2575.7	0.95%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-53	-1.232e+02	0.0000	15459.0	23.95%	57148.7	21.13%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-53	-1.228e+02	0.0000	10283.0	15.93%	36646.3	13.55%
TAGL1(MADS)/Tomato-TAGL1-ChIP-Seq(GSE116581)/Homer	CCAAAAATRG	1e-52	-1.215e+02	0.0000	19142.0	29.65%	72045.4	26.64%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-52	-1.211e+02	0.0000	14863.0	23.02%	54827.1	20.27%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-52	-1.203e+02	0.0000	3875.0	6.00%	12253.9	4.53%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e-51	-1.194e+02	0.0000	2080.0	3.22%	5861.5	2.17%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-51	-1.180e+02	0.0000	3475.0	5.38%	10829.5	4.00%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-50	-1.170e+02	0.0000	2378.0	3.68%	6924.1	2.56%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-50	-1.165e+02	0.0000	1434.0	2.22%	3711.7	1.37%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-50	-1.155e+02	0.0000	16931.0	26.23%	63310.5	23.41%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-49	-1.132e+02	0.0000	582.0	0.90%	1099.9	0.41%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-48	-1.120e+02	0.0000	3571.0	5.53%	11271.7	4.17%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-48	-1.119e+02	0.0000	855.0	1.32%	1904.8	0.70%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-47	-1.102e+02	0.0000	3688.0	5.71%	11728.3	4.34%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e-47	-1.098e+02	0.0000	1144.0	1.77%	2824.2	1.04%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-47	-1.085e+02	0.0000	14690.0	22.75%	54531.8	20.16%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-47	-1.082e+02	0.0000	2473.0	3.83%	7367.9	2.72%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-46	-1.071e+02	0.0000	2125.0	3.29%	6157.8	2.28%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-46	-1.069e+02	0.0000	1563.0	2.42%	4229.8	1.56%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-46	-1.067e+02	0.0000	13754.0	21.30%	50844.7	18.80%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-45	-1.059e+02	0.0000	100.0	0.15%	28.6	0.01%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-45	-1.057e+02	0.0000	1547.0	2.40%	4187.3	1.55%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-45	-1.053e+02	0.0000	275.0	0.43%	342.9	0.13%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-44	-1.035e+02	0.0000	596.0	0.92%	1186.8	0.44%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-44	-1.032e+02	0.0000	6437.0	9.97%	22205.7	8.21%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-44	-1.019e+02	0.0000	4959.0	7.68%	16610.7	6.14%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-44	-1.013e+02	0.0000	4522.0	7.00%	14977.1	5.54%
RIN(MADS)/Tomato-RIN-ChIP-Seq(GSE116581)/Homer	CYAAAAWWGG	1e-43	-9.903e+01	0.0000	21078.0	32.65%	80738.0	29.85%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-42	-9.813e+01	0.0000	5900.0	9.14%	20263.1	7.49%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-42	-9.773e+01	0.0000	1452.0	2.25%	3945.2	1.46%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-42	-9.728e+01	0.0000	2392.0	3.71%	7223.4	2.67%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-41	-9.629e+01	0.0000	3459.0	5.36%	11113.5	4.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-41	-9.456e+01	0.0000	703.0	1.09%	1552.4	0.57%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-40	-9.259e+01	0.0000	2107.0	3.26%	6272.8	2.32%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-39	-9.192e+01	0.0000	3877.0	6.01%	12740.1	4.71%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-39	-9.096e+01	0.0000	14034.0	21.74%	52490.3	19.41%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-38	-8.949e+01	0.0000	828.0	1.28%	1973.0	0.73%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-38	-8.897e+01	0.0000	970.0	1.50%	2429.2	0.90%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-37	-8.747e+01	0.0000	567.0	0.88%	1188.2	0.44%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e-37	-8.736e+01	0.0000	1658.0	2.57%	4761.3	1.76%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-37	-8.726e+01	0.0000	20738.0	32.12%	79819.8	29.51%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-37	-8.669e+01	0.0000	4929.0	7.63%	16810.4	6.22%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-36	-8.391e+01	0.0000	3338.0	5.17%	10879.7	4.02%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-35	-8.153e+01	0.0000	8353.0	12.94%	30207.7	11.17%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-35	-8.061e+01	0.0000	10458.0	16.20%	38556.0	14.25%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-34	-8.016e+01	0.0000	3870.0	5.99%	12938.4	4.78%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-34	-7.966e+01	0.0000	24054.0	37.26%	93767.2	34.67%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-33	-7.767e+01	0.0000	1798.0	2.79%	5371.4	1.99%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-33	-7.688e+01	0.0000	1389.0	2.15%	3949.1	1.46%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-33	-7.621e+01	0.0000	10602.0	16.42%	39275.9	14.52%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-33	-7.602e+01	0.0000	430.0	0.67%	852.6	0.32%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-32	-7.508e+01	0.0000	9524.0	14.75%	35029.3	12.95%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-32	-7.422e+01	0.0000	10545.0	16.33%	39116.1	14.46%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-32	-7.389e+01	0.0000	189.0	0.29%	233.9	0.09%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e-32	-7.377e+01	0.0000	7450.0	11.54%	26890.7	9.94%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-31	-7.356e+01	0.0000	1831.0	2.84%	5543.6	2.05%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-31	-7.155e+01	0.0000	424.0	0.66%	858.3	0.32%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-30	-7.098e+01	0.0000	434.0	0.67%	891.0	0.33%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-30	-7.093e+01	0.0000	4409.0	6.83%	15178.5	5.61%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-29	-6.800e+01	0.0000	270.0	0.42%	449.5	0.17%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-29	-6.755e+01	0.0000	5905.0	9.15%	21032.2	7.78%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-29	-6.749e+01	0.0000	2552.0	3.95%	8258.6	3.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-28	-6.676e+01	0.0000	505.0	0.78%	1126.0	0.42%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-28	-6.661e+01	0.0000	175.0	0.27%	221.0	0.08%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-28	-6.548e+01	0.0000	5600.0	8.67%	19904.0	7.36%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-28	-6.522e+01	0.0000	508.0	0.79%	1145.6	0.42%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-27	-6.392e+01	0.0000	18111.0	28.05%	70102.6	25.92%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-26	-6.040e+01	0.0000	88.0	0.14%	60.2	0.02%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-25	-5.987e+01	0.0000	19813.0	30.69%	77265.5	28.57%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-25	-5.963e+01	0.0000	11083.0	17.17%	41806.6	15.46%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-25	-5.899e+01	0.0000	7503.0	11.62%	27559.7	10.19%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-25	-5.862e+01	0.0000	1884.0	2.92%	5954.5	2.20%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-25	-5.838e+01	0.0000	12300.0	19.05%	46754.6	17.29%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-24	-5.700e+01	0.0000	8036.0	12.45%	29738.0	10.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-24	-5.650e+01	0.0000	840.0	1.30%	2290.6	0.85%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-23	-5.499e+01	0.0000	432.0	0.67%	979.4	0.36%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-23	-5.375e+01	0.0000	2046.0	3.17%	6630.2	2.45%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-23	-5.365e+01	0.0000	2242.0	3.47%	7358.8	2.72%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-22	-5.275e+01	0.0000	62.0	0.10%	30.3	0.01%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-22	-5.172e+01	0.0000	763.0	1.18%	2078.8	0.77%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-22	-5.126e+01	0.0000	7894.0	12.23%	29381.0	10.86%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-21	-5.043e+01	0.0000	7545.0	11.69%	28023.8	10.36%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-21	-5.030e+01	0.0000	7771.0	12.04%	28926.4	10.69%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e-20	-4.758e+01	0.0000	2898.0	4.49%	9953.0	3.68%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-20	-4.740e+01	0.0000	290.0	0.45%	599.4	0.22%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-20	-4.711e+01	0.0000	8705.0	13.48%	32776.5	12.12%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-20	-4.656e+01	0.0000	1921.0	2.98%	6297.8	2.33%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-20	-4.628e+01	0.0000	355.0	0.55%	800.8	0.30%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-19	-4.594e+01	0.0000	432.0	0.67%	1042.7	0.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-18	-4.306e+01	0.0000	837.0	1.30%	2426.3	0.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-18	-4.228e+01	0.0000	160.0	0.25%	262.3	0.10%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-18	-4.161e+01	0.0000	315.0	0.49%	708.7	0.26%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.014e+01	0.0000	931.0	1.44%	2794.0	1.03%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-17	-4.010e+01	0.0000	10052.0	15.57%	38496.6	14.23%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-17	-3.992e+01	0.0000	2435.0	3.77%	8368.2	3.09%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-17	-3.978e+01	0.0000	16938.0	26.24%	66552.2	24.61%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-17	-3.972e+01	0.0000	5234.0	8.11%	19254.5	7.12%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-17	-3.965e+01	0.0000	1070.0	1.66%	3296.5	1.22%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-17	-3.939e+01	0.0000	6720.0	10.41%	25159.4	9.30%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-16	-3.893e+01	0.0000	15243.0	23.61%	59659.8	22.06%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-16	-3.883e+01	0.0000	4934.0	7.64%	18102.1	6.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-16	-3.773e+01	0.0000	3805.0	5.89%	13711.8	5.07%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-16	-3.718e+01	0.0000	4135.0	6.40%	15018.5	5.55%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-15	-3.603e+01	0.0000	595.0	0.92%	1670.2	0.62%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-15	-3.568e+01	0.0000	5201.0	8.06%	19268.3	7.12%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-15	-3.494e+01	0.0000	3576.0	5.54%	12903.7	4.77%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-15	-3.460e+01	0.0000	919.0	1.42%	2827.5	1.05%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-15	-3.455e+01	0.0000	118.0	0.18%	183.3	0.07%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-14	-3.385e+01	0.0000	1222.0	1.89%	3941.8	1.46%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e-14	-3.305e+01	0.0000	3847.0	5.96%	14023.6	5.18%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-14	-3.268e+01	0.0000	15583.0	24.14%	61426.9	22.71%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-13	-3.175e+01	0.0000	4504.0	6.98%	16655.3	6.16%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e-13	-3.170e+01	0.0000	315.0	0.49%	778.7	0.29%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-13	-3.139e+01	0.0000	73.0	0.11%	86.6	0.03%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-13	-3.126e+01	0.0000	12242.0	18.96%	47848.5	17.69%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-13	-3.113e+01	0.0000	7549.0	11.69%	28835.3	10.66%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-13	-3.104e+01	0.0000	11777.0	18.24%	45966.6	16.99%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-12	-2.960e+01	0.0000	4295.0	6.65%	15908.4	5.88%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-12	-2.925e+01	0.0000	13593.0	21.06%	53490.1	19.78%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e-11	-2.653e+01	0.0000	638.0	0.99%	1936.1	0.72%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-11	-2.647e+01	0.0000	10217.0	15.83%	39883.7	14.75%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-11	-2.614e+01	0.0000	3308.0	5.12%	12140.3	4.49%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-11	-2.582e+01	0.0000	7709.0	11.94%	29747.2	11.00%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-11	-2.553e+01	0.0000	583.0	0.90%	1755.0	0.65%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-11	-2.552e+01	0.0000	480.0	0.74%	1392.2	0.51%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-10	-2.494e+01	0.0000	516.0	0.80%	1525.4	0.56%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-9	-2.280e+01	0.0000	14238.0	22.05%	56577.8	20.92%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-9	-2.229e+01	0.0000	162.0	0.25%	365.7	0.14%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-9	-2.218e+01	0.0000	8536.0	13.22%	33305.6	12.31%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-9	-2.218e+01	0.0000	8536.0	13.22%	33305.6	12.31%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-9	-2.115e+01	0.0000	6514.0	10.09%	25170.8	9.31%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-8	-2.016e+01	0.0000	4329.0	6.71%	16432.8	6.08%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-8	-1.973e+01	0.0000	12347.0	19.13%	49042.1	18.13%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-8	-1.956e+01	0.0000	2015.0	3.12%	7293.7	2.70%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-8	-1.937e+01	0.0000	5117.0	7.93%	19632.9	7.26%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-8	-1.934e+01	0.0000	950.0	1.47%	3205.2	1.19%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-8	-1.903e+01	0.0000	13326.0	20.64%	53118.9	19.64%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-8	-1.855e+01	0.0000	12166.0	18.84%	48389.6	17.89%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-8	-1.852e+01	0.0000	2385.0	3.69%	8778.6	3.25%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-7	-1.801e+01	0.0000	18987.0	29.41%	76575.0	28.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-7	-1.655e+01	0.0000	970.0	1.50%	3343.2	1.24%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-6	-1.606e+01	0.0000	10375.0	16.07%	41237.0	15.25%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-5	-1.372e+01	0.0000	13497.0	20.91%	54285.7	20.07%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-5	-1.350e+01	0.0000	8567.0	13.27%	34031.3	12.58%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-5	-1.303e+01	0.0000	9049.0	14.02%	36045.3	13.33%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-5	-1.242e+01	0.0000	2008.0	3.11%	7522.3	2.78%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.194e+01	0.0000	3629.0	5.62%	14039.4	5.19%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-4	-1.018e+01	0.0001	973.0	1.51%	3527.6	1.30%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-4	-1.010e+01	0.0001	1397.0	2.16%	5195.4	1.92%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-4	-9.433e+00	0.0001	13722.0	21.25%	55671.0	20.58%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-4	-9.313e+00	0.0002	2796.0	4.33%	10829.1	4.00%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-4	-9.306e+00	0.0002	3368.0	5.22%	13142.3	4.86%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-3	-8.761e+00	0.0003	7838.0	12.14%	31457.2	11.63%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-3	-8.746e+00	0.0003	1984.0	3.07%	7593.6	2.81%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-8.324e+00	0.0004	1571.0	2.43%	5961.8	2.20%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-3	-8.324e+00	0.0004	1571.0	2.43%	5961.8	2.20%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.944e+00	0.0006	3095.0	4.79%	12124.5	4.48%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-3	-7.881e+00	0.0007	3857.0	5.97%	15227.8	5.63%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.148e+00	0.0014	521.0	0.81%	1861.1	0.69%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-3	-6.913e+00	0.0018	13964.0	21.63%	57002.4	21.07%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e-2	-6.406e+00	0.0029	794.0	1.23%	2954.4	1.09%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-2	-6.329e+00	0.0032	891.0	1.38%	3341.4	1.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.159e+00	0.0038	740.0	1.15%	2750.8	1.02%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-2	-6.054e+00	0.0042	1131.0	1.75%	4309.3	1.59%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-5.955e+00	0.0046	9510.0	14.73%	38676.6	14.30%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-5.793e+00	0.0054	178.0	0.28%	585.8	0.22%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.787e+00	0.0054	4844.0	7.50%	19447.1	7.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.084e+00	0.0109	600.0	0.93%	2237.5	0.83%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-2	-4.699e+00	0.0160	9429.0	14.61%	38520.4	14.24%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.604e+00	0.0176	1821.0	2.82%	7179.1	2.65%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-4.467e+00	0.0201	4261.0	6.60%	17188.9	6.36%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-3.681e+00	0.0440	1229.0	1.90%	4836.8	1.79%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-1	-3.493e+00	0.0530	1358.0	2.10%	5375.0	1.99%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-3.332e+00	0.0622	2959.0	4.58%	11953.6	4.42%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.013e+00	0.0854	297.0	0.46%	1114.6	0.41%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-2.877e+00	0.0977	3699.0	5.73%	15062.2	5.57%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-1	-2.489e+00	0.1437	15916.0	24.65%	65974.6	24.39%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-2.479e+00	0.1449	6546.0	10.14%	26932.8	9.96%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.383e+00	0.1592	6820.0	10.56%	28090.7	10.39%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.265e+00	0.1788	20645.0	31.98%	85797.5	31.72%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.181e+00	0.1942	7745.0	12.00%	31982.5	11.82%
EIL4(EIL)/Tomato-EIL4-ChIP-Seq(GSE116581)/Homer	GATTCAWTGAAT	1e0	-1.963e+00	0.2411	1937.0	3.00%	7897.2	2.92%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.866e+00	0.2652	1542.0	2.39%	6276.1	2.32%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.742e+00	0.2997	175.0	0.27%	675.8	0.25%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.287e+00	0.4714	63773.0	98.78%	267104.1	98.75%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.076e+00	0.5814	64552.0	99.99%	270440.6	99.99%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-9.516e-01	0.6572	4821.0	7.47%	20106.4	7.43%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.257e-01	0.6734	10587.0	16.40%	44238.6	16.36%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.152e-01	0.7508	11927.0	18.47%	49901.3	18.45%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-6.823e-01	0.8560	10422.0	16.14%	43668.3	16.14%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-6.342e-01	0.8967	23.0	0.04%	96.0	0.04%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-6.048e-01	0.9219	972.0	1.51%	4087.2	1.51%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.754e-01	1.0000	4982.0	7.72%	21025.1	7.77%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.546e-01	1.0000	3439.0	5.33%	14547.0	5.38%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-3.362e-01	1.0000	46.0	0.07%	209.8	0.08%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.006e-01	1.0000	1553.0	2.41%	6622.5	2.45%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-2.837e-01	1.0000	1417.0	2.19%	6054.6	2.24%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.441e-01	1.0000	66.0	0.10%	305.3	0.11%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-2.095e-01	1.0000	11152.0	17.27%	47116.3	17.42%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-1.923e-01	1.0000	3.0	0.00%	19.5	0.01%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.519e-01	1.0000	23415.0	36.27%	98711.6	36.50%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.362e-01	1.0000	12872.0	19.94%	54467.3	20.14%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.289e-01	1.0000	594.0	0.92%	2621.9	0.97%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.121e-01	1.0000	15389.0	23.84%	65103.6	24.07%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-9.046e-02	1.0000	23300.0	36.09%	98392.8	36.38%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-6.772e-02	1.0000	8672.0	13.43%	36943.6	13.66%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-5.396e-02	1.0000	21061.0	32.62%	89137.5	32.96%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-5.186e-02	1.0000	10599.0	16.42%	45126.4	16.68%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-4.673e-02	1.0000	4839.0	7.50%	20802.8	7.69%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-3.788e-02	1.0000	799.0	1.24%	3584.3	1.33%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-3.069e-02	1.0000	3585.0	5.55%	15532.5	5.74%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.976e-02	1.0000	3273.0	5.07%	14207.3	5.25%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.113e-02	1.0000	152.0	0.24%	758.1	0.28%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.672e-02	1.0000	1654.0	2.56%	7333.0	2.71%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.342e-02	1.0000	32.0	0.05%	198.3	0.07%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.248e-02	1.0000	123.0	0.19%	637.5	0.24%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.248e-02	1.0000	17.0	0.03%	120.7	0.04%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.189e-02	1.0000	9359.0	14.50%	40158.7	14.85%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.175e-02	1.0000	5594.0	8.66%	24197.7	8.95%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.060e-02	1.0000	2415.0	3.74%	10642.9	3.93%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-8.686e-03	1.0000	8211.0	12.72%	35345.3	13.07%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-6.401e-03	1.0000	4723.0	7.32%	20562.8	7.60%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-5.324e-03	1.0000	3.0	0.00%	41.7	0.02%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.271e-03	1.0000	14719.0	22.80%	62942.1	23.27%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-5.231e-03	1.0000	155.0	0.24%	806.3	0.30%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-4.628e-03	1.0000	3676.0	5.69%	16123.4	5.96%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-4.320e-03	1.0000	824.0	1.28%	3811.0	1.41%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.346e-03	1.0000	10398.0	16.11%	44878.9	16.59%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.328e-03	1.0000	16936.0	26.23%	72526.5	26.81%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.024e-03	1.0000	16427.0	25.44%	70419.3	26.04%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-6.060e-04	1.0000	10612.0	16.44%	45890.8	16.97%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-4.260e-04	1.0000	7866.0	12.18%	34259.1	12.67%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.650e-04	1.0000	160.0	0.25%	900.5	0.33%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.600e-04	1.0000	4208.0	6.52%	18698.9	6.91%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.400e-04	1.0000	2519.0	3.90%	11404.0	4.22%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.220e-04	1.0000	513.0	0.79%	2554.7	0.94%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-9.200e-05	1.0000	1575.0	2.44%	7301.7	2.70%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.200e-05	1.0000	3679.0	5.70%	16498.2	6.10%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-2.700e-05	1.0000	1339.0	2.07%	6314.5	2.33%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.900e-05	1.0000	2967.0	4.60%	13476.2	4.98%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-9.000e-06	1.0000	5237.0	8.11%	23348.4	8.63%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.000e-06	1.0000	21547.0	33.38%	92691.9	34.27%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-6.000e-06	1.0000	14540.0	22.52%	63095.6	23.33%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-3.000e-06	1.0000	9383.0	14.53%	41213.0	15.24%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	7569.0	11.72%	33612.2	12.43%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-0.000e+00	1.0000	4773.0	7.39%	21618.1	7.99%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-0.000e+00	1.0000	4294.0	6.65%	19539.0	7.22%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-0.000e+00	1.0000	180.0	0.28%	1129.3	0.42%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-0.000e+00	1.0000	64541.0	99.97%	270468.9	100.00%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-0.000e+00	1.0000	12053.0	18.67%	53042.4	19.61%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-0.000e+00	1.0000	5751.0	8.91%	25994.7	9.61%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	41275.0	63.93%	176069.2	65.10%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-0.000e+00	1.0000	1691.0	2.62%	8183.5	3.03%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-0.000e+00	1.0000	816.0	1.26%	4202.7	1.55%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	1287.0	1.99%	6362.6	2.35%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-0.000e+00	1.0000	4144.0	6.42%	19090.8	7.06%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-0.000e+00	1.0000	1368.0	2.12%	6783.4	2.51%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-0.000e+00	1.0000	11210.0	17.36%	49650.9	18.36%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-0.000e+00	1.0000	12726.0	19.71%	56128.6	20.75%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-0.000e+00	1.0000	2419.0	3.75%	18368.6	6.79%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-0.000e+00	1.0000	1525.0	2.36%	9676.0	3.58%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-0.000e+00	1.0000	36447.0	56.46%	161520.6	59.72%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-0.000e+00	1.0000	2199.0	3.41%	11472.3	4.24%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-0.000e+00	1.0000	9124.0	14.13%	48158.6	17.80%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-0.000e+00	1.0000	2806.0	4.35%	14656.0	5.42%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-0.000e+00	1.0000	47163.0	73.05%	202965.7	75.04%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	38416.0	59.51%	187475.2	69.31%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-0.000e+00	1.0000	14979.0	23.20%	67405.4	24.92%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-0.000e+00	1.0000	2990.0	4.63%	46721.1	17.27%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-0.000e+00	1.0000	3994.0	6.19%	58326.5	21.56%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-0.000e+00	1.0000	8443.0	13.08%	95434.1	35.28%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	2678.0	4.15%	17714.8	6.55%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-0.000e+00	1.0000	35.0	0.05%	859.5	0.32%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-0.000e+00	1.0000	1861.0	2.88%	10930.0	4.04%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-0.000e+00	1.0000	2083.0	3.23%	12065.9	4.46%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-0.000e+00	1.0000	3977.0	6.16%	49771.3	18.40%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-0.000e+00	1.0000	8394.0	13.00%	133603.7	49.40%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-0.000e+00	1.0000	52.0	0.08%	1517.2	0.56%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-0.000e+00	1.0000	5658.0	8.76%	28389.4	10.50%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-0.000e+00	1.0000	16414.0	25.42%	78236.9	28.93%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-0.000e+00	1.0000	2800.0	4.34%	50038.1	18.50%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-0.000e+00	1.0000	2486.0	3.85%	17910.9	6.62%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-0.000e+00	1.0000	5263.0	8.15%	38261.5	14.15%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-0.000e+00	1.0000	21892.0	33.91%	105936.4	39.17%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	896.0	1.39%	4867.0	1.80%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-0.000e+00	1.0000	23132.0	35.83%	118629.3	43.86%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-0.000e+00	1.0000	1893.0	2.93%	13169.6	4.87%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-0.000e+00	1.0000	10060.0	15.58%	73510.5	27.18%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-0.000e+00	1.0000	9112.0	14.11%	107844.0	39.87%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-0.000e+00	1.0000	2145.0	3.32%	40225.5	14.87%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-0.000e+00	1.0000	758.0	1.17%	14876.5	5.50%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-0.000e+00	1.0000	2331.0	3.61%	26866.5	9.93%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-0.000e+00	1.0000	7095.0	10.99%	73341.8	27.12%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-0.000e+00	1.0000	1724.0	2.67%	12651.5	4.68%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-0.000e+00	1.0000	11269.0	17.46%	60959.0	22.54%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-0.000e+00	1.0000	45879.0	71.07%	197994.3	73.20%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-0.000e+00	1.0000	11659.0	18.06%	58329.6	21.57%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-0.000e+00	1.0000	31174.0	48.29%	139576.1	51.60%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-0.000e+00	1.0000	6012.0	9.31%	45606.5	16.86%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-0.000e+00	1.0000	598.0	0.93%	3435.3	1.27%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-0.000e+00	1.0000	6221.0	9.64%	38260.7	14.15%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-0.000e+00	1.0000	12752.0	19.75%	62088.8	22.96%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-0.000e+00	1.0000	3351.0	5.19%	43933.9	16.24%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-0.000e+00	1.0000	562.0	0.87%	3894.2	1.44%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-0.000e+00	1.0000	29543.0	45.76%	147771.3	54.63%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-0.000e+00	1.0000	6315.0	9.78%	79104.7	29.25%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-0.000e+00	1.0000	10817.0	16.76%	55262.6	20.43%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-0.000e+00	1.0000	9435.0	14.61%	42602.1	15.75%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-0.000e+00	1.0000	10055.0	15.57%	53921.9	19.94%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-0.000e+00	1.0000	1280.0	1.98%	22767.6	8.42%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-0.000e+00	1.0000	22932.0	35.52%	120587.5	44.58%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-0.000e+00	1.0000	15425.0	23.89%	72537.0	26.82%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-0.000e+00	1.0000	169.0	0.26%	1889.9	0.70%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-0.000e+00	1.0000	22469.0	34.80%	108882.1	40.26%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-0.000e+00	1.0000	23239.0	36.00%	125598.8	46.44%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-0.000e+00	1.0000	590.0	0.91%	12147.0	4.49%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-0.000e+00	1.0000	7357.0	11.40%	35588.9	13.16%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-0.000e+00	1.0000	1826.0	2.83%	32390.8	11.98%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-0.000e+00	1.0000	12743.0	19.74%	57460.6	21.24%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-0.000e+00	1.0000	6307.0	9.77%	31541.9	11.66%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	7540.0	11.68%	55020.4	20.34%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-0.000e+00	1.0000	3435.0	5.32%	16888.3	6.24%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-0.000e+00	1.0000	19030.0	29.48%	85434.1	31.59%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	9456.0	14.65%	43349.4	16.03%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	64559.0	100.00%	270478.3	100.00%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	0.000e+00	1.0000	17349.0	26.87%	92654.2	34.26%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	0.000e+00	1.0000	17846.0	27.64%	88536.3	32.73%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	0.000e+00	1.0000	14647.0	22.69%	70823.9	26.18%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	0.000e+00	1.0000	6690.0	10.36%	54385.7	20.11%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	0.000e+00	1.0000	10154.0	15.73%	76525.4	28.29%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	0.000e+00	1.0000	408.0	0.63%	5418.3	2.00%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	0.000e+00	1.0000	11452.0	17.74%	52743.3	19.50%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	0.000e+00	1.0000	3600.0	5.58%	22545.6	8.34%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	0.000e+00	1.0000	17351.0	26.88%	100883.3	37.30%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	0.000e+00	1.0000	14650.0	22.69%	69837.5	25.82%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	0.000e+00	1.0000	7687.0	11.91%	39415.6	14.57%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	0.000e+00	1.0000	19412.0	30.07%	98501.3	36.42%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	0.000e+00	1.0000	5707.0	8.84%	32879.3	12.16%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	0.000e+00	1.0000	14979.0	23.20%	71846.3	26.56%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	0.000e+00	1.0000	282.0	0.44%	2236.3	0.83%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	0.000e+00	1.0000	17430.0	27.00%	79832.2	29.52%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	0.000e+00	1.0000	688.0	1.07%	13672.0	5.05%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	0.000e+00	1.0000	18740.0	29.03%	86265.3	31.89%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	0.000e+00	1.0000	5710.0	8.84%	75916.2	28.07%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	0.000e+00	1.0000	24878.0	38.54%	108669.2	40.18%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	0.000e+00	1.0000	3397.0	5.26%	18615.0	6.88%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	0.000e+00	1.0000	23401.0	36.25%	119156.1	44.05%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	0.000e+00	1.0000	5625.0	8.71%	26327.9	9.73%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	0.000e+00	1.0000	8172.0	12.66%	39492.6	14.60%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	0.000e+00	1.0000	3302.0	5.11%	16700.7	6.17%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	0.000e+00	1.0000	21336.0	33.05%	110059.1	40.69%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	0.000e+00	1.0000	557.0	0.86%	6513.4	2.41%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	0.000e+00	1.0000	26525.0	41.09%	131946.5	48.78%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	0.000e+00	1.0000	3687.0	5.71%	34189.8	12.64%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	0.000e+00	1.0000	14038.0	21.74%	65269.4	24.13%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	0.000e+00	1.0000	1218.0	1.89%	21926.6	8.11%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	0.000e+00	1.0000	9348.0	14.48%	100756.1	37.25%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	0.000e+00	1.0000	8527.0	13.21%	43991.7	16.26%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	0.000e+00	1.0000	36804.0	57.01%	175903.2	65.03%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	0.000e+00	1.0000	1477.0	2.29%	22747.2	8.41%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	0.000e+00	1.0000	11464.0	17.76%	66060.4	24.42%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	0.000e+00	1.0000	27543.0	42.66%	143016.5	52.88%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	0.000e+00	1.0000	1411.0	2.19%	26153.7	9.67%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	0.000e+00	1.0000	2045.0	3.17%	31382.5	11.60%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	0.000e+00	1.0000	834.0	1.29%	6592.8	2.44%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	0.000e+00	1.0000	41179.0	63.79%	181993.6	67.29%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	0.000e+00	1.0000	2351.0	3.64%	17855.1	6.60%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	0.000e+00	1.0000	5770.0	8.94%	32758.2	12.11%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	0.000e+00	1.0000	10263.0	15.90%	51623.1	19.09%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	0.000e+00	1.0000	1221.0	1.89%	25785.6	9.53%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	0.000e+00	1.0000	1668.0	2.58%	11582.1	4.28%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	0.000e+00	1.0000	537.0	0.83%	12804.5	4.73%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	0.000e+00	1.0000	333.0	0.52%	19103.0	7.06%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	0.000e+00	1.0000	13822.0	21.41%	80234.5	29.66%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	0.000e+00	1.0000	5658.0	8.76%	48038.4	17.76%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	0.000e+00	1.0000	3553.0	5.50%	64094.1	23.70%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	0.000e+00	1.0000	753.0	1.17%	6691.7	2.47%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	0.000e+00	1.0000	2651.0	4.11%	12699.1	4.70%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	0.000e+00	1.0000	2407.0	3.73%	11953.4	4.42%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	0.000e+00	1.0000	1506.0	2.33%	29938.9	11.07%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	0.000e+00	1.0000	3699.0	5.73%	19517.0	7.22%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	0.000e+00	1.0000	22179.0	34.35%	98294.8	36.34%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	11107.0	17.20%	78525.3	29.03%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	0.000e+00	1.0000	3455.0	5.35%	26363.4	9.75%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	0.000e+00	1.0000	3992.0	6.18%	24094.7	8.91%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	0.000e+00	1.0000	1839.0	2.85%	17222.8	6.37%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	0.000e+00	1.0000	6082.0	9.42%	28007.1	10.35%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	0.000e+00	1.0000	2435.0	3.77%	18767.7	6.94%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	0.000e+00	1.0000	12163.0	18.84%	55107.5	20.37%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	9507.0	14.73%	49781.6	18.41%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	0.000e+00	1.0000	20331.0	31.49%	91864.5	33.96%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	0.000e+00	1.0000	2303.0	3.57%	13893.3	5.14%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	0.000e+00	1.0000	5274.0	8.17%	62956.9	23.28%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	0.000e+00	1.0000	23375.0	36.21%	104605.1	38.67%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	0.000e+00	1.0000	2842.0	4.40%	13908.4	5.14%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	11676.0	18.09%	86345.0	31.92%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	0.000e+00	1.0000	2905.0	4.50%	16925.0	6.26%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	0.000e+00	1.0000	5369.0	8.32%	27572.1	10.19%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	0.000e+00	1.0000	3776.0	5.85%	18911.1	6.99%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	0.000e+00	1.0000	13515.0	20.93%	74287.8	27.47%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	0.000e+00	1.0000	2699.0	4.18%	30774.6	11.38%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	0.000e+00	1.0000	13369.0	20.71%	63636.6	23.53%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	0.000e+00	1.0000	31638.0	49.01%	140950.2	52.11%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	0.000e+00	1.0000	934.0	1.45%	17546.1	6.49%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	0.000e+00	1.0000	9559.0	14.81%	51284.3	18.96%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	0.000e+00	1.0000	3087.0	4.78%	16618.5	6.14%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	0.000e+00	1.0000	1756.0	2.72%	20230.8	7.48%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	0.000e+00	1.0000	2283.0	3.54%	16518.5	6.11%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	0.000e+00	1.0000	9025.0	13.98%	43223.6	15.98%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	0.000e+00	1.0000	9777.0	15.14%	48070.7	17.77%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	0.000e+00	1.0000	9605.0	14.88%	47375.9	17.52%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	0.000e+00	1.0000	2408.0	3.73%	11767.4	4.35%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	0.000e+00	1.0000	1649.0	2.55%	8121.3	3.00%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	0.000e+00	1.0000	768.0	1.19%	8429.5	3.12%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	0.000e+00	1.0000	23971.0	37.13%	129496.3	47.88%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	0.000e+00	1.0000	19135.0	29.64%	167331.3	61.86%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	0.000e+00	1.0000	6191.0	9.59%	61798.6	22.85%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	0.000e+00	1.0000	3298.0	5.11%	16158.4	5.97%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	0.000e+00	1.0000	1790.0	2.77%	27030.7	9.99%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	0.000e+00	1.0000	3802.0	5.89%	18761.0	6.94%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	0.000e+00	1.0000	27963.0	43.31%	136804.0	50.58%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	0.000e+00	1.0000	30165.0	46.72%	138080.3	51.05%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	0.000e+00	1.0000	9276.0	14.37%	43547.2	16.10%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	0.000e+00	1.0000	1753.0	2.72%	21584.8	7.98%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	0.000e+00	1.0000	14582.0	22.59%	65372.4	24.17%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	0.000e+00	1.0000	1096.0	1.70%	23202.5	8.58%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	0.000e+00	1.0000	16159.0	25.03%	83309.2	30.80%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	0.000e+00	1.0000	15259.0	23.64%	68253.5	25.23%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	0.000e+00	1.0000	28324.0	43.87%	133235.9	49.26%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	0.000e+00	1.0000	3531.0	5.47%	43090.0	15.93%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	0.000e+00	1.0000	27410.0	42.46%	139420.5	51.55%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	0.000e+00	1.0000	1814.0	2.81%	28323.0	10.47%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	0.000e+00	1.0000	5271.0	8.16%	24866.9	9.19%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	0.000e+00	1.0000	12567.0	19.47%	60966.1	22.54%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	0.000e+00	1.0000	3414.0	5.29%	17394.2	6.43%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	0.000e+00	1.0000	2557.0	3.96%	18203.4	6.73%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	0.000e+00	1.0000	30926.0	47.90%	145038.1	53.62%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	0.000e+00	1.0000	3880.0	6.01%	42931.2	15.87%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	0.000e+00	1.0000	25297.0	39.18%	142045.7	52.52%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	0.000e+00	1.0000	1991.0	3.08%	31016.7	11.47%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	0.000e+00	1.0000	36787.0	56.98%	170390.1	63.00%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	9345.0	14.48%	69802.5	25.81%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	0.000e+00	1.0000	261.0	0.40%	6324.9	2.34%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	0.000e+00	1.0000	857.0	1.33%	15587.9	5.76%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	0.000e+00	1.0000	9058.0	14.03%	51626.4	19.09%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	0.000e+00	1.0000	1385.0	2.15%	25002.4	9.24%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	0.000e+00	1.0000	4349.0	6.74%	43322.5	16.02%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	25935.0	40.17%	115395.4	42.66%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	0.000e+00	1.0000	638.0	0.99%	6706.0	2.48%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	0.000e+00	1.0000	10839.0	16.79%	56434.7	20.86%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	0.000e+00	1.0000	3005.0	4.65%	53860.8	19.91%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	0.000e+00	1.0000	2514.0	3.89%	12961.9	4.79%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	0.000e+00	1.0000	2617.0	4.05%	40148.3	14.84%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	0.000e+00	1.0000	11730.0	18.17%	56280.8	20.81%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	0.000e+00	1.0000	5081.0	7.87%	34933.1	12.92%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	0.000e+00	1.0000	28011.0	43.39%	121383.6	44.88%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	0.000e+00	1.0000	16783.0	26.00%	85204.5	31.50%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	0.000e+00	1.0000	3005.0	4.65%	23230.7	8.59%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	0.000e+00	1.0000	2331.0	3.61%	39140.3	14.47%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	0.000e+00	1.0000	2064.0	3.20%	37062.9	13.70%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	0.000e+00	1.0000	4411.0	6.83%	38156.1	14.11%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	0.000e+00	1.0000	1884.0	2.92%	11927.5	4.41%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	0.000e+00	1.0000	162.0	0.25%	2291.9	0.85%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	0.000e+00	1.0000	1625.0	2.52%	29045.4	10.74%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	0.000e+00	1.0000	20514.0	31.78%	92635.7	34.25%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	0.000e+00	1.0000	13547.0	20.98%	74803.7	27.66%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	0.000e+00	1.0000	4245.0	6.58%	23613.4	8.73%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	0.000e+00	1.0000	406.0	0.63%	8994.9	3.33%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	0.000e+00	1.0000	10058.0	15.58%	48042.3	17.76%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	0.000e+00	1.0000	4136.0	6.41%	31492.9	11.64%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	0.000e+00	1.0000	1409.0	2.18%	8521.2	3.15%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	0.000e+00	1.0000	2751.0	4.26%	48888.7	18.07%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	1288.0	2.00%	6521.3	2.41%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	0.000e+00	1.0000	26108.0	40.44%	135215.8	49.99%
SeqBias: G/A bias	RRRRRRRRRR	1e0	0.000e+00	1.0000	64421.0	99.79%	270468.7	100.00%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	0.000e+00	1.0000	16299.0	25.25%	95849.8	35.44%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	0.000e+00	1.0000	1142.0	1.77%	15337.4	5.67%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	0.000e+00	1.0000	11288.0	17.48%	59064.4	21.84%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	9726.0	15.07%	67116.5	24.81%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	0.000e+00	1.0000	8221.0	12.73%	37016.9	13.69%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	0.000e+00	1.0000	4842.0	7.50%	25591.8	9.46%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	0.000e+00	1.0000	7542.0	11.68%	34260.4	12.67%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	0.000e+00	1.0000	655.0	1.01%	13584.3	5.02%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	160.0	0.25%	1907.5	0.71%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	0.000e+00	1.0000	3584.0	5.55%	30913.2	11.43%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	0.000e+00	1.0000	13288.0	20.58%	67546.6	24.97%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	0.000e+00	1.0000	3327.0	5.15%	18216.2	6.73%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	0.000e+00	1.0000	14262.0	22.09%	71400.1	26.40%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	12570.0	19.47%	62553.0	23.13%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	0.000e+00	1.0000	6446.0	9.98%	31553.4	11.67%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	0.000e+00	1.0000	16778.0	25.99%	73763.0	27.27%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	74.0	0.11%	681.7	0.25%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	0.000e+00	1.0000	7603.0	11.78%	38330.8	14.17%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	0.000e+00	1.0000	2545.0	3.94%	23404.4	8.65%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	0.000e+00	1.0000	2460.0	3.81%	35962.7	13.30%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	20050.0	31.06%	96440.2	35.66%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	0.000e+00	1.0000	789.0	1.22%	7700.0	2.85%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	32778.0	50.77%	152543.1	56.40%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	0.000e+00	1.0000	3659.0	5.67%	48217.5	17.83%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	32703.0	50.66%	141261.2	52.23%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	0.000e+00	1.0000	6919.0	10.72%	77493.8	28.65%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	0.000e+00	1.0000	10049.0	15.57%	50461.1	18.66%
SeqBias: CG bias	SSSSSSSSSS	1e0	0.000e+00	1.0000	44314.0	68.64%	203720.2	75.32%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	0.000e+00	1.0000	6186.0	9.58%	29920.1	11.06%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	0.000e+00	1.0000	679.0	1.05%	9987.7	3.69%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	0.000e+00	1.0000	9240.0	14.31%	49576.3	18.33%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	0.000e+00	1.0000	15165.0	23.49%	74765.1	27.64%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	0.000e+00	1.0000	8290.0	12.84%	71453.0	26.42%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	0.000e+00	1.0000	1542.0	2.39%	25529.9	9.44%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	0.000e+00	1.0000	11906.0	18.44%	56409.0	20.86%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	0.000e+00	1.0000	1972.0	3.05%	14418.0	5.33%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	0.000e+00	1.0000	20491.0	31.74%	103224.4	38.16%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	0.000e+00	1.0000	2486.0	3.85%	27550.0	10.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	1816.0	2.81%	11788.8	4.36%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	0.000e+00	1.0000	809.0	1.25%	4822.9	1.78%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	0.000e+00	1.0000	1234.0	1.91%	20328.4	7.52%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	0.000e+00	1.0000	3908.0	6.05%	55785.2	20.62%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	0.000e+00	1.0000	11164.0	17.29%	88273.4	32.64%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	0.000e+00	1.0000	4962.0	7.69%	24696.6	9.13%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	0.000e+00	1.0000	239.0	0.37%	4059.8	1.50%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	0.000e+00	1.0000	15435.0	23.91%	79402.4	29.36%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	0.000e+00	1.0000	1648.0	2.55%	30836.7	11.40%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	0.000e+00	1.0000	19217.0	29.77%	100487.0	37.15%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	0.000e+00	1.0000	16418.0	25.43%	73440.3	27.15%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	0.000e+00	1.0000	1121.0	1.74%	10529.6	3.89%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	0.000e+00	1.0000	18756.0	29.05%	85100.6	31.46%
SeqBias: A/T bias	WWWWWWWWWW	1e0	0.000e+00	1.0000	61791.0	95.71%	264646.9	97.84%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	0.000e+00	1.0000	512.0	0.79%	9422.4	3.48%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	0.000e+00	1.0000	2098.0	3.25%	19618.9	7.25%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	0.000e+00	1.0000	2694.0	4.17%	15219.5	5.63%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	0.000e+00	1.0000	2184.0	3.38%	23966.6	8.86%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	0.000e+00	1.0000	1038.0	1.61%	7388.7	2.73%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	0.000e+00	1.0000	965.0	1.49%	5535.9	2.05%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	0.000e+00	1.0000	12878.0	19.95%	61798.3	22.85%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	0.000e+00	1.0000	6373.0	9.87%	29697.4	10.98%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	8422.0	13.05%	39910.4	14.76%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	0.000e+00	1.0000	25879.0	40.09%	138415.9	51.17%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	0.000e+00	1.0000	20164.0	31.23%	90226.3	33.36%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	0.000e+00	1.0000	7844.0	12.15%	35985.9	13.30%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	0.000e+00	1.0000	12280.0	19.02%	54902.6	20.30%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	0.000e+00	1.0000	10135.0	15.70%	46341.6	17.13%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	0.000e+00	1.0000	7795.0	12.07%	59570.5	22.02%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	0.000e+00	1.0000	10522.0	16.30%	49921.9	18.46%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	0.000e+00	1.0000	4315.0	6.68%	20266.6	7.49%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	0.000e+00	1.0000	14818.0	22.95%	70011.9	25.88%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	0.000e+00	1.0000	1340.0	2.08%	17084.2	6.32%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	0.000e+00	1.0000	1380.0	2.14%	27179.1	10.05%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	0.000e+00	1.0000	23293.0	36.08%	108348.2	40.06%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	0.000e+00	1.0000	2276.0	3.53%	11268.6	4.17%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	0.000e+00	1.0000	948.0	1.47%	17434.2	6.45%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	0.000e+00	1.0000	14297.0	22.15%	64029.1	23.67%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	0.000e+00	1.0000	28832.0	44.66%	139591.7	51.61%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	0.000e+00	1.0000	4424.0	6.85%	42997.3	15.90%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	0.000e+00	1.0000	875.0	1.36%	16317.4	6.03%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	0.000e+00	1.0000	5744.0	8.90%	48226.9	17.83%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	0.000e+00	1.0000	13992.0	21.67%	67219.4	24.85%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	0.000e+00	1.0000	3546.0	5.49%	42284.3	15.63%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	0.000e+00	1.0000	6428.0	9.96%	67758.5	25.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	17836.0	27.63%	80318.8	29.70%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	0.000e+00	1.0000	1823.0	2.82%	30413.8	11.24%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	0.000e+00	1.0000	25100.0	38.88%	125097.6	46.25%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	0.000e+00	1.0000	24336.0	37.70%	126728.5	46.85%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	0.000e+00	1.0000	2470.0	3.83%	45876.2	16.96%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	0.000e+00	1.0000	7955.0	12.32%	37801.4	13.98%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	0.000e+00	1.0000	6704.0	10.38%	33360.4	12.33%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	0.000e+00	1.0000	7927.0	12.28%	41571.4	15.37%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	0.000e+00	1.0000	3237.0	5.01%	20333.1	7.52%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	119.0	0.18%	4839.6	1.79%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	0.000e+00	1.0000	20487.0	31.73%	98513.0	36.42%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	0.000e+00	1.0000	3489.0	5.40%	16884.0	6.24%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	0.000e+00	1.0000	4974.0	7.70%	23007.4	8.51%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	0.000e+00	1.0000	18584.0	28.79%	85034.1	31.44%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	0.000e+00	1.0000	5076.0	7.86%	37859.1	14.00%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	0.000e+00	1.0000	28745.0	44.53%	135138.6	49.96%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	0.000e+00	1.0000	818.0	1.27%	5341.5	1.97%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	0.000e+00	1.0000	1992.0	3.09%	39033.6	14.43%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	0.000e+00	1.0000	14658.0	22.70%	83457.9	30.86%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	0.000e+00	1.0000	5094.0	7.89%	28928.7	10.70%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	0.000e+00	1.0000	13493.0	20.90%	66324.1	24.52%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	0.000e+00	1.0000	6224.0	9.64%	29933.3	11.07%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	0.000e+00	1.0000	1028.0	1.59%	14286.1	5.28%
bcd(Homeobox)/Embryo-Bcd-ChIP-Seq(GSE86966)/Homer	VNNGGATTADNN	1e0	0.000e+00	1.0000	17127.0	26.53%	84835.9	31.37%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	0.000e+00	1.0000	12981.0	20.11%	61804.3	22.85%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	0.000e+00	1.0000	20816.0	32.24%	102473.1	37.89%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	0.000e+00	1.0000	2388.0	3.70%	42918.3	15.87%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	0.000e+00	1.0000	152.0	0.24%	3596.6	1.33%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	0.000e+00	1.0000	2048.0	3.17%	11999.3	4.44%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	0.000e+00	1.0000	3367.0	5.22%	16161.9	5.98%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	0.000e+00	1.0000	15577.0	24.13%	72991.6	26.99%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	0.000e+00	1.0000	15124.0	23.43%	86124.0	31.84%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	221.0	0.34%	2922.4	1.08%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	0.000e+00	1.0000	1354.0	2.10%	8434.8	3.12%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	0.000e+00	1.0000	21614.0	33.48%	99635.8	36.84%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	0.000e+00	1.0000	16780.0	25.99%	87943.1	32.51%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	0.000e+00	1.0000	25.0	0.04%	596.9	0.22%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	0.000e+00	1.0000	509.0	0.79%	4016.4	1.48%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	0.000e+00	1.0000	22267.0	34.49%	124151.4	45.90%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	0.000e+00	1.0000	417.0	0.65%	3374.8	1.25%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	0.000e+00	1.0000	48.0	0.07%	1557.8	0.58%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	0.000e+00	1.0000	22845.0	35.39%	111631.1	41.27%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	0.000e+00	1.0000	64376.0	99.72%	270099.1	99.86%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	0.000e+00	1.0000	18562.0	28.75%	87492.6	32.35%