Information for 1-TTTTTTTTTT (Motif 1)

G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
Reverse Opposite:
G C T A C G T A C G T A C G T A G C T A C G T A C G T A C G T A G C T A C G T A
p-value:1e0
log p-value:-0.000e+00
Information Content per bp:1.473
Number of Target Sequences with motif11102.0
Percentage of Target Sequences with motif17.21%
Number of Background Sequences with motif409.0
Percentage of Background Sequences with motif88.20%
Average Position of motif in Targets267.5 +/- 201.9bp
Average Position of motif in Background3438683.8 +/- 3864241.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:TTTTTTTTTT
TTTTTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SeqBias: polyA-repeat

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTTT
TTTTTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF384/MA1125.1/Jaspar

Match Rank:3
Score:0.89
Offset:2
Orientation:reverse strand
Alignment:TTTTTTTTTT----
--TTTTTTTTTANN
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G C A T C G A T G C A T C A G T G C T A C G T A G C T A

SXL(RRM)/Drosophila_melanogaster-RNCMPT00119-PBM/HughesRNA

Match Rank:4
Score:0.87
Offset:3
Orientation:forward strand
Alignment:TTTTTTTTTT
---TTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T G A C T G A C T C G A T C G A T C G A T C G A T C G A T

REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:TTTTTTTTTT
--TTTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T C G A T C G A T C G A T A C G T C G A T A C G T A C G T C A G T

PB0182.1_Srf_2/Jaspar

Match Rank:6
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTTTTTT----
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T A C G T A C G T A C G T A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

Pp_0228(RRM)/Physcomitrella_patens-RNCMPT00228-PBM/HughesRNA

Match Rank:7
Score:0.85
Offset:3
Orientation:forward strand
Alignment:TTTTTTTTTT
---TTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A G C T C G A T A C G T A C G T A C G T A C G T A G C T

Tv_0236(RRM)/Trichomonas_vaginalis-RNCMPT00236-PBM/HughesRNA

Match Rank:8
Score:0.84
Offset:3
Orientation:forward strand
Alignment:TTTTTTTTTT
---TTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A G C T C G A T A C G T A C G T A C G T A G C T A C G T

PABPC4(RRM)/Homo_sapiens-RNCMPT00043-PBM/HughesRNA

Match Rank:9
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:TTTTTTTTTT
---TTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A G C T

HuR(RRM)/Homo_sapiens-RNCMPT00274-PBM/HughesRNA

Match Rank:10
Score:0.84
Offset:3
Orientation:forward strand
Alignment:TTTTTTTTTT
---TTTTTTT
 G C A T C G A T G C A T G C A T C G A T C G A T G C A T G C A T G C A T C G A T
A C G T A C G T A C G T A G C T A C G T C G A T C A G T A C G T A G C T A C G T