Information for 17-AGATGGRGTTTY (Motif 18)

C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
Reverse Opposite:
C T G A C G T A C T G A C T G A A G T C A G T C A G T C A G T C C T G A A C G T A G T C A C G T
p-value:1e-971
log p-value:-2.236e+03
Information Content per bp:1.853
Number of Target Sequences with motif1944.0
Percentage of Target Sequences with motif3.01%
Number of Background Sequences with motif402.9
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets284.8 +/- 241.1bp
Average Position of motif in Background268.2 +/- 287.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pp_0237(RRM)/Physcomitrella_patens-RNCMPT00237-PBM/HughesRNA

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGATGGRGTTTY
-GATGGAGT---
 C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A C G T A C T G C G T A A C G T A C T G A C T G C G T A C T A G A C G T A C G T A C G T A C G T

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGATGGRGTTTY
GGAACAGATGGCA----
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A A C G T A C G T A C G T A C G T

NEUROD1/MA1109.1/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGATGGRGTTTY
GGACAGATGGCAG---
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G A C G T A C G T A C G T

RBM5(RRM)/Homo_sapiens-RNCMPT00154-PBM/HughesRNA

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGATGGRGTTTY
-GAAGGAG----
 C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A C G T A T C G C G T A T C G A A T C G A T C G C T G A C T A G A C G T A C G T A C G T A C G T

CTCF/MA0531.1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGATGGRGTTTY
CCGCTAGATGGCGCC--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A T G C G T A C T C A G T G A C G A C T C T G A C T A G C T G A A C G T A C T G C A T G G A T C C A T G G A T C G A T C A C G T A C G T

ADR1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGATGGRGTTTY
---NGGAGG---
 C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A C G T A C G T A C G T A C G T A C T G A C T G C T A G A C T G A C G T A C G T A C G T A C G T

ADR1(MacIsaac)/Yeast

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGATGGRGTTTY
---NGGAGG---
 C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A C G T A C G T A C G T A C G T A C T G A C T G C T A G A C T G A C G T A C G T A C G T A C G T

Tal1

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGATGGRGTTTY
CAGATG-------
 A C G T C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
A G T C C G T A A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HAND2/MA1638.1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGATGGRGTTTY
ACCAGATGGC-----
 A C G T A C G T A C G T C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C A C G T A C G T A C G T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGATGGRGTTTY------
-GATAGGGTATCACTAAT
 C G T A A C T G C G T A A G C T C T A G C T A G C T A G A C T G A G C T A G C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T