Information for 2-BYTGCCARGRNN (Motif 2)

A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
Reverse Opposite:
A T C G A G C T A G T C A G T C G A T C C G A T A C T G T A C G T G A C G C T A T C G A T C G A
p-value:1e-5211
log p-value:-1.200e+04
Information Content per bp:1.510
Number of Target Sequences with motif40792.0
Percentage of Target Sequences with motif63.19%
Number of Background Sequences with motif80941.3
Percentage of Background Sequences with motif29.96%
Average Position of motif in Targets260.6 +/- 189.7bp
Average Position of motif in Background240.1 +/- 237.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.54
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.86
Offset:1
Orientation:forward strand
Alignment:BYTGCCARGRNN
-TTGCCAAG---
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.83
Offset:2
Orientation:forward strand
Alignment:BYTGCCARGRNN
--TGCCAAG---
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.83
Offset:2
Orientation:forward strand
Alignment:BYTGCCARGRNN
--TGCCAAG---
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A C G T A C G T A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:BYTGCCARGRNN
NNTGCCAAGNN-
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:forward strand
Alignment:BYTGCCARGRNN
CGTGCCAAG---
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:BYTGCCARGRNN
GGTGCCAAGT--
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

RIM101/MA0368.1/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:BYTGCCARGRNN
--CGCCAAG---
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A C G T A G T C A C T G A G T C A G T C C G T A C G T A A C T G A C G T A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:8
Score:0.74
Offset:2
Orientation:forward strand
Alignment:BYTGCCARGRNN
--TGCCAGCB--
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:BYTGCCARGRNN----
-TTTCCTGGAAAGNNN
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:BYTGCCARGRNN
-CTGCCCGCA--
 A G C T A G C T C G A T A C T G A T G C G T A C G C T A C T A G T C A G T C A G T C G A T A G C
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T