Information for 3-RGNACABNVTGT (Motif 4)

C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T
Reverse Opposite:
G T C A G T A C C G T A A T C G G C A T T G A C C G A T A C T G A C G T G A C T G A T C G A C T
p-value:1e-4696
log p-value:-1.081e+04
Information Content per bp:1.587
Number of Target Sequences with motif28140.0
Percentage of Target Sequences with motif43.59%
Number of Background Sequences with motif42214.4
Percentage of Background Sequences with motif15.63%
Average Position of motif in Targets260.6 +/- 167.3bp
Average Position of motif in Background245.9 +/- 234.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-RGNACABNVTGT--
VAGRACAKNCTGTBC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-RGNACABNVTGT--
VAGRACAKWCTGTYC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABNVTGT---
NAGAACAGNCTGTNCT
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-RGNACABNVTGT--
AAGAACATWHTGTTC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:RGNACABNVTGT----
AGNACANNNTGTNCTN
 C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

NR3C2/MA0727.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABNVTGT----
GGGAACATTGTGTTCCC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-RGNACABNVTGT----
NGGAACATNATGTACCC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C

Ar/MA0007.3/Jaspar

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-RGNACABNVTGT----
GGGAACACGGTGTACCC
 A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G G C T A G T C A T A G C T C G A A G T C T A C G T C A G G A C T A T C G G C A T C G T A G A T C G A T C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RGNACABNVTGT
CCAGGAACAG-----
 A C G T A C G T A C G T C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

HAC1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:RGNACABNVTGT-
-GGACAGCGTGTC
 C T G A C T A G C T G A G T C A A G T C C G T A A C T G C G T A T A G C C G A T A C T G C A G T A C G T
A C G T A C G T A C T G G T A C A G T C C G T A A C T G A G T C A C T G A C G T A C T G A C G T A G T C