Information for 2-CTCTSTSTCY (Motif 5)

A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
Reverse Opposite:
C T G A T C A G C T G A T A G C C T G A T A G C C G T A T A C G C G T A T C A G
p-value:1e-4657
log p-value:-1.072e+04
Information Content per bp:1.571
Number of Target Sequences with motif39738.0
Percentage of Target Sequences with motif61.55%
Number of Background Sequences with motif81473.7
Percentage of Background Sequences with motif30.16%
Average Position of motif in Targets262.7 +/- 189.1bp
Average Position of motif in Background237.5 +/- 264.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.66
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CTCTSTSTCY
CTCTCTCTCY
 A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A T G C G C A T T A G C C G A T T A G C G C A T T A G C G C A T A T G C G A C T

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--CTCTSTSTCY
CTTTCTCTCTCY
 A C G T A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A T G C G A C T A G C T A G C T A G T C A G C T T A G C A C G T G A T C A G C T A G T C A G T C

Trl/MA0205.2/Jaspar

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTCTSTSTCY-
TCTCTCTCTTNN
 A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T A C G T
A G C T A G T C A C G T G A T C A C G T T A G C G C A T G T A C C G A T A G C T A G C T A G T C

SeqBias: GA-repeat

Match Rank:4
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-CTCTSTSTCY
TCTCTCTCTC-
 A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A G C T A G T C A G C T A G T C A G C T A G T C A G C T A G T C A G C T A G T C A C G T

BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CTCTSTSTCY--
TTCTCTCTCYTC
 A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T A C G T A C G T
G C A T G A C T G T A C A C G T A G T C G C A T A G T C G C A T A T G C G A T C C G A T G T A C

REF6(Zf)/Arabidopsis-REF6-ChIP-Seq(GSE106942)/Homer

Match Rank:6
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTCTSTSTCY
TVCTCTGTTT--
 A C G T A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A C G T T G A C A G T C A G C T A G T C A G C T A C T G G A C T A G C T G A C T A C G T A C G T

RAMOSA1/MA1416.1/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CTCTSTSTCY-
TCTCTCTCTCTCTC
 A C G T A C G T A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T A C G T
G A C T G A T C A G C T T G A C C A G T T G A C C A G T T G A C C A G T T G A C A G C T G A T C A G C T G A T C

REF6/MA1415.1/Jaspar

Match Rank:8
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTCTSTSTCY
TNCTCTGTTTT-
 A C G T A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
C G A T T C A G G T A C G A C T T G A C A G C T C T A G A G C T C G A T G A C T G A C T A C G T

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CTCTSTSTCY
CTCTCTCY--
 A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A G T C A G C T A G T C A C G T A G T C A G C T A G T C G A T C A C G T A C G T

SRSF10(RRM)/Homo_sapiens-RNCMPT00088-PBM/HughesRNA

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTCTSTSTCY
CCTCTCT----
 A C G T A G T C G C A T A T G C G C A T A T C G A G C T A T C G G A C T A G T C G A C T
A G T C A G T C A G C T A G T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T