Information for 13-CAAGCATTAG (Motif 18)

A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A C G T A A C G T A C T G A G T C A C G T A C G T A C T G
p-value:1e-51
log p-value:-1.176e+02
Information Content per bp:1.530
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets82.5 +/- 70.8bp
Average Position of motif in Background123.0 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAGCATTAG
AAACMATTAN
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAAGCATTAG--
-ATCCATTAGCA
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T
A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAAGCATTAG-
-NNGGATTAGN
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

BARX2/MA1471.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAGCATTAG
AAAAACCATTAC
 A C G T A C G T A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

Nr2e3/MA0164.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAGCATTAG
CAAGCTT---
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAGCATTAG--
AAGGGATTAGAA
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A C G T A C G T
G C T A C G T A C T A G C T A G C T A G G T C A C A G T G C A T C G T A C T A G C G T A C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAAGCATTAG-
-VRGGATTARN
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

HOXB4/MA1499.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAAGCATTAG
--ATCATTAG
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
A C G T A C G T T C G A A G C T G T A C C T G A A C G T A C G T C T G A T C A G

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAAGCATTAG-
-GNGGATTAGN
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G A C G T
A C G T C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

VENTX/MA0724.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAAGCATTAG
-ACCGATTAG
 A G T C C G T A C G T A A C T G A G T C C G T A A C G T A C G T C G T A A C T G
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G