Information for 15-GCCTACAA (Motif 19)

A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A
Reverse Opposite:
A G C T C A G T A T C G A G C T C T G A T A C G A T C G A G T C
p-value:1e-49
log p-value:-1.139e+02
Information Content per bp:1.723
Number of Target Sequences with motif1124.0
Percentage of Target Sequences with motif5.00%
Number of Background Sequences with motif839.8
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets104.3 +/- 51.6bp
Average Position of motif in Background96.5 +/- 65.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCCTACAA---
-RNAACAATGG
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCCTACAA---
ATTTGCATACAATGG
 A C G T A C G T A C G T A C G T A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCCTACAA-
---AACAAT
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCTACAA---
-VRRACAAWGG
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCTACAA----
BMRVACAAWGGV
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T A C G T
A T G C T G A C C T G A T A C G C G T A A G T C C G T A C G T A C G T A C T A G T C A G T G C A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCCTACAA--------
----ACAAAGGNBCCT
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCTACAA----
---GACAATGNN
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCCTACAA----
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCCTACAA---
---RACAAWGG
 A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCCTACAA------
CTCACACAATGGCGC
 A C G T A C T G A T G C A T G C G A C T T C G A A T G C G T C A T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C