Information for 5-TTTTATTGGAAC (Motif 3)

A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
Reverse Opposite:
C T A G G A C T A C G T T A G C A G T C G T C A C T G A A G C T C T G A C G T A G T C A T G C A
p-value:1e-244
log p-value:-5.639e+02
Information Content per bp:1.908
Number of Target Sequences with motif358.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif36.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets102.8 +/- 43.3bp
Average Position of motif in Background91.6 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.2/Jaspar

Match Rank:1
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTGGAAC
NNATTTTATTGGNN-
 A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGAAC
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTTTATTGGAAC
TTTTATTRGN--
 A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C A C G T A C G T

HOXA13/MA0650.2/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAAC
GTTTTATTGGN--
 A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTGGAAC
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TTTTATTGGAAC
TTTTATKRGG--
 A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAAC
NTTTTATDRG---
 A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGAAC
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:9
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTGGAAC
GNATTTTTTTTTTGANC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
C T A G G C T A C T G A A C G T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A T C A G T C A T G T G C A T C G A G T A C

HOXD13/MA0909.2/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTGGAAC
GTTTTATTGGG--
 A C G T A C G T A C G T A C G T G A C T T C G A A G C T C A G T C T A G A C T G T G C A C G T A A G T C
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G A C G T A C G T