Information for 9-CTGCCAGH (Motif 4)

A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C
Reverse Opposite:
C A T G A G T C G C A T T A C G A T C G A T G C G C T A T C A G
p-value:1e-132
log p-value:-3.048e+02
Information Content per bp:1.602
Number of Target Sequences with motif5986.0
Percentage of Target Sequences with motif26.64%
Number of Background Sequences with motif5326.0
Percentage of Background Sequences with motif19.86%
Average Position of motif in Targets99.4 +/- 57.1bp
Average Position of motif in Background101.8 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CTGCCAGH
TTGCCAAG
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:forward strand
Alignment:CTGCCAGH-
-TGCCAGCB
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAGH
CGTGCCAAG
 A C G T A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGH-
VBTGWCAGCB
 A C G T A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAGH-
GGTGCCAAGT
 A C G T A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CTGCCAGH-
-TGTCANYT
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CTGCCAGH-
ATGCCAACC
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CTGCCAGH
YTGWCADY
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C
G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CTGCCAGH
TTGACAGC
 A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

NFIC/MA0161.2/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAGH--
NNTGCCAAGNN
 A C G T A G T C C G A T T A C G T A G C A T G C C G T A T C A G G T A C A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A