Information for 6-TTTTATTG (Motif 4)

C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G
Reverse Opposite:
A G T C C G T A C T G A A C G T C G T A C G T A C G T A C G T A
p-value:1e-184
log p-value:-4.252e+02
Information Content per bp:1.910
Number of Target Sequences with motif3050.0
Percentage of Target Sequences with motif13.57%
Number of Background Sequences with motif2111.7
Percentage of Background Sequences with motif7.87%
Average Position of motif in Targets98.8 +/- 55.0bp
Average Position of motif in Background100.6 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.2/Jaspar

Match Rank:1
Score:0.96
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATTG---
NNATTTTATTGGNN
 A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T A C G T
C G T A C G T A C G T A C G A T C G A T C G A T G C A T T G C A G C A T C G A T C T A G C A T G G C A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.94
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTG----
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXA13/MA0650.2/Jaspar

Match Rank:3
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTG--
GTTTTATTGGN
 A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T
C A T G C A G T A C G T A G C T A G C T C G T A A C G T A C G T C T A G A T C G A C T G

CDX2/MA0465.2/Jaspar

Match Rank:4
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTG---
NTTTTATTGCNN
 A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T A C G T
C G A T G C A T C G A T G C A T G C A T T C G A G A C T C A G T C T A G G A T C G C A T G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATTG----
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.89
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATTG----
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXD13/MA0909.2/Jaspar

Match Rank:7
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTG--
GTTTTATTGGG
 A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T
A C T G A C G T A C G T A G C T A C G T C G T A A G C T A C G T A C T G A T C G A T C G

HOXD9/MA0913.2/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTG-
NTTTTATTGC
 A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TTTTATTG--
TTTTATTRGN
 C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATTG--
NTTTTATTACN
 A C G T C G A T A C G T A C G T A C G T C G T A A G C T G C A T A C T G A C G T A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C