Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22477)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 26817)	% of Background Sequences with Motif
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1044	-2.406e+03	0.0000	8040.0	35.77%	4454.3	16.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-999	-2.301e+03	0.0000	8137.0	36.21%	4633.1	17.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-965	-2.223e+03	0.0000	9017.0	40.12%	5521.0	20.58%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-904	-2.082e+03	0.0000	6206.0	27.61%	3153.7	11.76%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-709	-1.635e+03	0.0000	3320.0	14.77%	1278.4	4.77%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-703	-1.619e+03	0.0000	5937.0	26.42%	3319.8	12.38%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-686	-1.581e+03	0.0000	1878.0	8.36%	447.1	1.67%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-669	-1.541e+03	0.0000	1709.0	7.60%	377.2	1.41%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-662	-1.526e+03	0.0000	1988.0	8.85%	520.3	1.94%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-603	-1.390e+03	0.0000	1328.0	5.91%	245.1	0.91%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-569	-1.311e+03	0.0000	2208.0	9.82%	726.8	2.71%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-508	-1.170e+03	0.0000	6534.0	29.07%	4342.9	16.19%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-494	-1.138e+03	0.0000	6553.0	29.16%	4400.0	16.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-476	-1.097e+03	0.0000	3379.0	15.04%	1672.6	6.24%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-457	-1.053e+03	0.0000	5985.0	26.63%	3973.3	14.81%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-441	-1.017e+03	0.0000	5091.0	22.65%	3195.5	11.91%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-435	-1.002e+03	0.0000	7947.0	35.36%	5970.8	22.26%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-345	-7.955e+02	0.0000	3775.0	16.80%	2283.5	8.51%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-293	-6.767e+02	0.0000	5033.0	22.39%	3594.7	13.40%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-220	-5.070e+02	0.0000	10237.0	45.55%	9459.3	35.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-210	-4.849e+02	0.0000	7014.0	31.21%	5968.1	22.25%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-141	-3.249e+02	0.0000	5178.0	23.04%	4419.4	16.48%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-140	-3.233e+02	0.0000	4502.0	20.03%	3724.7	13.89%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-108	-2.508e+02	0.0000	1099.0	4.89%	625.1	2.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-104	-2.410e+02	0.0000	415.0	1.85%	136.4	0.51%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-88	-2.038e+02	0.0000	9653.0	42.95%	9780.3	36.46%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-79	-1.822e+02	0.0000	1010.0	4.49%	630.7	2.35%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-74	-1.706e+02	0.0000	4309.0	19.17%	3941.1	14.69%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-73	-1.698e+02	0.0000	7085.0	31.53%	6995.7	26.08%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-68	-1.580e+02	0.0000	3113.0	13.85%	2720.1	10.14%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-65	-1.505e+02	0.0000	3680.0	16.37%	3338.6	12.45%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-57	-1.331e+02	0.0000	4402.0	19.59%	4176.1	15.57%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-56	-1.312e+02	0.0000	10110.0	44.99%	10659.5	39.74%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-55	-1.270e+02	0.0000	9643.0	42.91%	10136.6	37.79%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-54	-1.259e+02	0.0000	9095.0	40.47%	9504.7	35.43%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-54	-1.249e+02	0.0000	1316.0	5.86%	1000.7	3.73%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-44	-1.020e+02	0.0000	5216.0	23.21%	5209.6	19.42%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-40	-9.240e+01	0.0000	2166.0	9.64%	1938.7	7.23%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-39	-9.087e+01	0.0000	7026.0	31.26%	7317.6	27.28%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-39	-9.069e+01	0.0000	5656.0	25.17%	5761.9	21.48%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-37	-8.699e+01	0.0000	1019.0	4.53%	794.0	2.96%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-37	-8.573e+01	0.0000	2135.0	9.50%	1928.1	7.19%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-36	-8.364e+01	0.0000	1337.0	5.95%	1115.7	4.16%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-36	-8.323e+01	0.0000	3126.0	13.91%	2995.6	11.17%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-35	-8.145e+01	0.0000	3645.0	16.22%	3569.7	13.31%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-35	-8.063e+01	0.0000	5706.0	25.39%	5874.8	21.90%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-34	-7.994e+01	0.0000	1921.0	8.55%	1724.3	6.43%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-34	-7.916e+01	0.0000	5271.0	23.45%	5391.5	20.10%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-33	-7.827e+01	0.0000	1834.0	8.16%	1639.8	6.11%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-33	-7.771e+01	0.0000	2708.0	12.05%	2567.1	9.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-33	-7.690e+01	0.0000	3117.0	13.87%	3013.2	11.23%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-32	-7.451e+01	0.0000	3293.0	14.65%	3217.0	11.99%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-32	-7.379e+01	0.0000	1896.0	8.44%	1720.0	6.41%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-29	-6.892e+01	0.0000	4802.0	21.37%	4922.2	18.35%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-27	-6.331e+01	0.0000	1871.0	8.33%	1731.1	6.45%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-25	-5.942e+01	0.0000	1602.0	7.13%	1462.4	5.45%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-25	-5.891e+01	0.0000	2684.0	11.94%	2625.0	9.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-25	-5.763e+01	0.0000	1666.0	7.41%	1536.5	5.73%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-24	-5.659e+01	0.0000	3876.0	17.25%	3956.2	14.75%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-23	-5.521e+01	0.0000	1807.0	8.04%	1695.4	6.32%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-23	-5.488e+01	0.0000	3335.0	14.84%	3363.8	12.54%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-22	-5.271e+01	0.0000	2036.0	9.06%	1951.8	7.28%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-20	-4.720e+01	0.0000	2709.0	12.05%	2713.5	10.12%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-19	-4.473e+01	0.0000	2166.0	9.64%	2131.0	7.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-18	-4.319e+01	0.0000	5356.0	23.83%	5727.4	21.35%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-18	-4.230e+01	0.0000	2512.0	11.18%	2523.1	9.41%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-17	-4.090e+01	0.0000	1951.0	8.68%	1916.0	7.14%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-17	-4.072e+01	0.0000	1154.0	5.13%	1061.0	3.96%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-17	-3.968e+01	0.0000	326.0	1.45%	233.6	0.87%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-16	-3.854e+01	0.0000	665.0	2.96%	565.0	2.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-16	-3.801e+01	0.0000	536.0	2.38%	437.5	1.63%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-15	-3.595e+01	0.0000	1032.0	4.59%	951.1	3.55%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-15	-3.578e+01	0.0000	1111.0	4.94%	1035.7	3.86%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-15	-3.566e+01	0.0000	7252.0	32.27%	7990.0	29.79%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-15	-3.540e+01	0.0000	296.0	1.32%	213.8	0.80%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-14	-3.396e+01	0.0000	3210.0	14.28%	3356.2	12.51%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-14	-3.236e+01	0.0000	1703.0	7.58%	1689.3	6.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-13	-3.219e+01	0.0000	2101.0	9.35%	2128.8	7.94%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-13	-3.048e+01	0.0000	2380.0	10.59%	2449.6	9.13%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-12	-2.864e+01	0.0000	671.0	2.99%	601.0	2.24%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.499e+01	0.0000	621.0	2.76%	562.5	2.10%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-10	-2.496e+01	0.0000	480.0	2.14%	417.4	1.56%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-10	-2.457e+01	0.0000	1496.0	6.66%	1506.9	5.62%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-10	-2.442e+01	0.0000	665.0	2.96%	610.2	2.27%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-9	-2.287e+01	0.0000	736.0	3.27%	691.9	2.58%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-9	-2.286e+01	0.0000	1568.0	6.98%	1596.1	5.95%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-9	-2.278e+01	0.0000	2176.0	9.68%	2275.9	8.48%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-9	-2.267e+01	0.0000	23.0	0.10%	5.7	0.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-9	-2.212e+01	0.0000	700.0	3.11%	656.7	2.45%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-9	-2.197e+01	0.0000	409.0	1.82%	354.4	1.32%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-9	-2.076e+01	0.0000	202.0	0.90%	153.5	0.57%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-8	-2.055e+01	0.0000	2680.0	11.92%	2863.9	10.68%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-8	-2.051e+01	0.0000	654.0	2.91%	614.3	2.29%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-8	-1.931e+01	0.0000	8693.0	38.68%	9876.3	36.82%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-8	-1.882e+01	0.0000	1307.0	5.82%	1333.9	4.97%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-7	-1.792e+01	0.0000	34.0	0.15%	13.9	0.05%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-7	-1.789e+01	0.0000	1831.0	8.15%	1925.6	7.18%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-7	-1.763e+01	0.0000	2140.0	9.52%	2276.6	8.49%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.757e+01	0.0000	855.0	3.80%	844.1	3.15%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-7	-1.660e+01	0.0000	139.0	0.62%	102.9	0.38%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-7	-1.627e+01	0.0000	917.0	4.08%	919.3	3.43%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-7	-1.626e+01	0.0000	5974.0	26.58%	6722.2	25.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-6	-1.609e+01	0.0000	1122.0	4.99%	1146.0	4.27%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.584e+01	0.0000	456.0	2.03%	424.6	1.58%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-6	-1.511e+01	0.0000	928.0	4.13%	938.5	3.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-6	-1.502e+01	0.0000	2718.0	12.09%	2960.1	11.04%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-6	-1.486e+01	0.0000	1805.0	8.03%	1921.1	7.16%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-6	-1.483e+01	0.0000	1750.0	7.79%	1859.5	6.93%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.469e+01	0.0000	1351.0	6.01%	1411.4	5.26%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-6	-1.447e+01	0.0000	124.0	0.55%	92.7	0.35%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-6	-1.433e+01	0.0000	258.0	1.15%	224.1	0.84%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-6	-1.420e+01	0.0000	1377.0	6.13%	1444.6	5.39%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-6	-1.404e+01	0.0000	1899.0	8.45%	2035.3	7.59%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-6	-1.393e+01	0.0000	3169.0	14.10%	3491.2	13.02%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.343e+01	0.0000	1416.0	6.30%	1494.4	5.57%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-5	-1.334e+01	0.0000	1807.0	8.04%	1937.3	7.22%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-5	-1.318e+01	0.0000	172.0	0.77%	141.9	0.53%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-5	-1.309e+01	0.0000	1097.0	4.88%	1139.8	4.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-5	-1.281e+01	0.0000	3067.0	13.65%	3388.0	12.63%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-5	-1.266e+01	0.0000	2461.0	10.95%	2691.0	10.03%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.257e+01	0.0000	1884.0	8.38%	2032.1	7.58%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-5	-1.232e+01	0.0000	33.0	0.15%	16.2	0.06%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-5	-1.204e+01	0.0000	434.0	1.93%	417.5	1.56%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-5	-1.193e+01	0.0000	311.0	1.38%	287.9	1.07%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.169e+01	0.0000	8282.0	36.85%	9515.6	35.47%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-4	-1.147e+01	0.0000	3193.0	14.21%	3550.9	13.24%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-4	-1.145e+01	0.0000	349.0	1.55%	329.7	1.23%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-1.142e+01	0.0000	135.0	0.60%	109.8	0.41%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-1.116e+01	0.0000	1016.0	4.52%	1063.5	3.96%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-4	-1.112e+01	0.0000	123.0	0.55%	98.6	0.37%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-4	-1.068e+01	0.0001	1347.0	5.99%	1440.9	5.37%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-4	-1.068e+01	0.0001	3138.0	13.96%	3497.5	13.04%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-4	-1.058e+01	0.0001	141.0	0.63%	117.5	0.44%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-1.057e+01	0.0001	1294.0	5.76%	1382.0	5.15%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-4	-1.048e+01	0.0001	1333.0	5.93%	1426.6	5.32%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-4	-1.016e+01	0.0001	3061.0	13.62%	3415.6	12.73%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-4	-1.000e+01	0.0001	523.0	2.33%	524.9	1.96%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-4	-9.590e+00	0.0002	539.0	2.40%	544.4	2.03%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-4	-9.381e+00	0.0003	1051.0	4.68%	1117.6	4.17%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-4	-9.225e+00	0.0003	824.0	3.67%	863.8	3.22%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-3	-9.121e+00	0.0003	1921.0	8.55%	2112.0	7.87%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-3	-9.111e+00	0.0003	1214.0	5.40%	1304.7	4.86%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.932e+00	0.0004	89.0	0.40%	70.2	0.26%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.932e+00	0.0004	272.0	1.21%	258.9	0.97%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.932e+00	0.0004	272.0	1.21%	258.9	0.97%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-3	-8.811e+00	0.0004	2308.0	10.27%	2562.9	9.55%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-3	-8.695e+00	0.0005	942.0	4.19%	1001.0	3.73%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-8.635e+00	0.0005	1808.0	8.04%	1988.5	7.41%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-8.556e+00	0.0006	158.0	0.70%	140.8	0.52%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-3	-8.484e+00	0.0006	6404.0	28.50%	7360.9	27.44%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-3	-8.340e+00	0.0007	421.0	1.87%	423.0	1.58%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-8.329e+00	0.0007	1216.0	5.41%	1314.0	4.90%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-3	-8.322e+00	0.0007	1961.0	8.73%	2168.7	8.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.293e+00	0.0007	1760.0	7.83%	1937.2	7.22%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-3	-8.275e+00	0.0007	417.0	1.86%	418.0	1.56%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-3	-8.250e+00	0.0007	1723.0	7.67%	1895.4	7.07%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-3	-8.200e+00	0.0008	1779.0	7.92%	1960.0	7.31%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-3	-8.178e+00	0.0008	655.0	2.91%	682.9	2.55%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-3	-8.101e+00	0.0008	831.0	3.70%	880.3	3.28%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.991e+00	0.0009	1234.0	5.49%	1338.9	4.99%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-7.928e+00	0.0010	843.0	3.75%	895.7	3.34%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-3	-7.743e+00	0.0012	1905.0	8.48%	2111.8	7.87%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-7.682e+00	0.0012	657.0	2.92%	688.2	2.57%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-3	-7.532e+00	0.0014	499.0	2.22%	513.1	1.91%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-3	-7.455e+00	0.0015	3093.0	13.76%	3494.8	13.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-3	-7.228e+00	0.0019	2565.0	11.41%	2883.8	10.75%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-3	-7.210e+00	0.0019	2152.0	9.58%	2404.7	8.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-7.013e+00	0.0024	1918.0	8.53%	2136.4	7.96%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-6.856e+00	0.0027	731.0	3.25%	778.8	2.90%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-6.778e+00	0.0029	862.0	3.84%	927.2	3.46%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-6.450e+00	0.0041	764.0	3.40%	819.4	3.05%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-2	-6.314e+00	0.0046	2667.0	11.87%	3017.1	11.25%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-2	-6.265e+00	0.0048	1378.0	6.13%	1523.2	5.68%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-6.145e+00	0.0054	1882.0	8.37%	2107.5	7.86%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-6.126e+00	0.0055	619.0	2.75%	658.3	2.45%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-6.109e+00	0.0056	463.0	2.06%	483.5	1.80%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e-2	-5.699e+00	0.0083	1459.0	6.49%	1624.7	6.06%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-5.417e+00	0.0110	1529.0	6.80%	1709.8	6.37%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-2	-5.370e+00	0.0114	941.0	4.19%	1033.0	3.85%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-5.187e+00	0.0137	1501.0	6.68%	1680.7	6.27%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.157e+00	0.0140	3524.0	15.68%	4043.3	15.07%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.096e+00	0.0148	1486.0	6.61%	1664.2	6.20%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.024e+00	0.0158	164.0	0.73%	160.9	0.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.005e+00	0.0160	342.0	1.52%	356.2	1.33%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-4.986e+00	0.0163	1227.0	5.46%	1366.8	5.10%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-2	-4.841e+00	0.0187	677.0	3.01%	736.4	2.75%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-4.841e+00	0.0187	1474.0	6.56%	1654.6	6.17%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-4.793e+00	0.0194	371.0	1.65%	390.2	1.45%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-4.679e+00	0.0216	115.0	0.51%	109.4	0.41%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-4.565e+00	0.0241	1163.0	5.17%	1298.7	4.84%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-4.529e+00	0.0249	985.0	4.38%	1093.6	4.08%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-4.431e+00	0.0273	1093.0	4.86%	1219.5	4.55%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.399e+00	0.0280	386.0	1.72%	410.6	1.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-4.167e+00	0.0351	626.0	2.79%	686.0	2.56%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-4.156e+00	0.0353	1381.0	6.14%	1557.6	5.81%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-4.124e+00	0.0363	147.0	0.65%	146.8	0.55%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.724e+00	0.0539	894.0	3.98%	999.4	3.73%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.544e+00	0.0642	2888.0	12.85%	3334.1	12.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.408e+00	0.0732	227.0	1.01%	239.0	0.89%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.200e+00	0.0897	198.0	0.88%	208.3	0.78%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.116e+00	0.0971	65.0	0.29%	62.8	0.23%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.114e+00	0.0971	569.0	2.53%	633.0	2.36%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.082e+00	0.0994	1602.0	7.13%	1835.8	6.84%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-3.005e+00	0.1068	454.0	2.02%	502.0	1.87%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-2.953e+00	0.1120	1310.0	5.83%	1496.6	5.58%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.906e+00	0.1169	603.0	2.68%	675.0	2.52%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.824e+00	0.1262	86.0	0.38%	86.2	0.32%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-2.679e+00	0.1451	117.0	0.52%	121.7	0.45%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.659e+00	0.1473	333.0	1.48%	367.0	1.37%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.635e+00	0.1503	338.0	1.50%	372.3	1.39%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.606e+00	0.1539	3699.0	16.46%	4319.7	16.10%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.545e+00	0.1628	627.0	2.79%	708.0	2.64%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.517e+00	0.1667	4296.0	19.12%	5029.8	18.75%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.503e+00	0.1683	3592.0	15.98%	4196.7	15.65%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.462e+00	0.1744	14.0	0.06%	11.9	0.04%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.421e+00	0.1810	302.0	1.34%	333.1	1.24%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.356e+00	0.1922	2288.0	10.18%	2660.7	9.92%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.981e+00	0.2784	408.0	1.82%	461.4	1.72%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.937e+00	0.2896	883.0	3.93%	1017.2	3.79%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.930e+00	0.2903	1162.0	5.17%	1345.9	5.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.908e+00	0.2954	225.0	1.00%	250.8	0.94%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.896e+00	0.2978	107.0	0.48%	115.8	0.43%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.857e+00	0.3082	82.0	0.36%	87.4	0.33%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.852e+00	0.3083	1604.0	7.14%	1868.2	6.96%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.849e+00	0.3083	119.0	0.53%	129.9	0.48%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.831e+00	0.3121	47.0	0.21%	48.0	0.18%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.828e+00	0.3121	132.0	0.59%	144.4	0.54%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.825e+00	0.3121	1051.0	4.68%	1217.1	4.54%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.807e+00	0.3155	1674.0	7.45%	1952.7	7.28%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.797e+00	0.3171	739.0	3.29%	851.6	3.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.795e+00	0.3171	71.0	0.32%	75.5	0.28%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.674e+00	0.3558	362.0	1.61%	412.0	1.54%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.597e+00	0.3823	125.0	0.56%	138.6	0.52%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.594e+00	0.3823	1538.0	6.84%	1798.4	6.70%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.567e+00	0.3908	14.0	0.06%	13.9	0.05%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.554e+00	0.3943	850.0	3.78%	988.0	3.68%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.541e+00	0.3977	837.0	3.72%	972.1	3.62%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.537e+00	0.3977	633.0	2.82%	732.8	2.73%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.522e+00	0.4019	127.0	0.57%	141.1	0.53%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.521e+00	0.4019	12.0	0.05%	11.4	0.04%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.382e+00	0.4582	131.0	0.58%	148.0	0.55%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.376e+00	0.4594	568.0	2.53%	659.7	2.46%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.255e+00	0.5161	379.0	1.69%	439.9	1.64%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.241e+00	0.5211	164.0	0.73%	187.4	0.70%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.238e+00	0.5211	667.0	2.97%	779.2	2.90%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.226e+00	0.5249	808.0	3.60%	946.2	3.53%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.145e+00	0.5666	1709.0	7.60%	2017.5	7.52%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.133e+00	0.5715	537.0	2.39%	628.2	2.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.074e+00	0.6040	3796.0	16.89%	4503.1	16.79%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.068e+00	0.6047	9.0	0.04%	9.4	0.04%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.039e+00	0.6204	848.0	3.77%	999.7	3.73%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-9.907e-01	0.6484	2358.0	10.49%	2797.0	10.43%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-9.849e-01	0.6495	3442.0	15.32%	4087.2	15.24%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-9.686e-01	0.6576	75.0	0.33%	86.6	0.32%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-9.669e-01	0.6576	171.0	0.76%	199.3	0.74%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.539e-01	0.6621	566.0	2.52%	667.0	2.49%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-8.915e-01	0.7020	774.0	3.44%	916.8	3.42%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-8.318e-01	0.7423	452.0	2.01%	535.4	2.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.918e-01	0.7696	97.0	0.43%	114.7	0.43%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-7.394e-01	0.8079	927.0	4.12%	1104.4	4.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.250e-01	0.8165	45.0	0.20%	53.4	0.20%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.125e-01	0.8236	548.0	2.44%	653.2	2.44%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.992e-01	0.8314	168.0	0.75%	200.3	0.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.898e-01	0.8362	2140.0	9.52%	2554.8	9.52%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.759e-01	0.8446	1805.0	8.03%	2155.6	8.04%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.539e-01	0.8602	3901.0	17.36%	4659.9	17.37%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-6.399e-01	0.8690	976.0	4.34%	1167.9	4.35%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.211e-01	0.8822	25.0	0.11%	30.5	0.11%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-6.014e-01	0.8965	143.0	0.64%	172.4	0.64%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.659e-01	0.9254	264.0	1.17%	318.5	1.19%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.430e-01	0.9433	723.0	3.22%	869.2	3.24%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.400e-01	0.9433	2320.0	10.32%	2780.9	10.37%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.228e-01	0.9555	422.0	1.88%	510.0	1.90%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.073e-01	0.9669	25.0	0.11%	31.2	0.12%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-4.662e-01	1.0000	7.0	0.03%	9.6	0.04%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.121e-01	1.0000	17.0	0.08%	23.0	0.09%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.112e-01	1.0000	517.0	2.30%	628.9	2.34%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-3.894e-01	1.0000	994.0	4.42%	1203.6	4.49%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.847e-01	1.0000	36.0	0.16%	46.4	0.17%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.768e-01	1.0000	61.0	0.27%	78.0	0.29%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-3.701e-01	1.0000	854.0	3.80%	1036.5	3.86%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.644e-01	1.0000	299.0	1.33%	367.2	1.37%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.576e-01	1.0000	15.0	0.07%	20.1	0.07%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.485e-01	1.0000	506.0	2.25%	618.8	2.31%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.407e-01	1.0000	201.0	0.89%	249.7	0.93%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.300e-01	1.0000	14.0	0.06%	19.9	0.07%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.206e-01	1.0000	239.0	1.06%	296.1	1.10%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.000e-01	1.0000	88.0	0.39%	112.2	0.42%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.928e-01	1.0000	126.0	0.56%	159.6	0.59%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.845e-01	1.0000	160.0	0.71%	201.6	0.75%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.499e-01	1.0000	1542.0	6.86%	1875.8	6.99%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.425e-01	1.0000	8.0	0.04%	12.9	0.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.325e-01	1.0000	41.0	0.18%	55.3	0.21%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-2.323e-01	1.0000	711.0	3.16%	874.6	3.26%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.255e-01	1.0000	5.0	0.02%	8.4	0.03%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.152e-01	1.0000	2439.0	10.85%	2959.5	11.03%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.118e-01	1.0000	122.0	0.54%	157.8	0.59%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.092e-01	1.0000	2148.0	9.56%	2610.3	9.73%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.995e-01	1.0000	1418.0	6.31%	1732.9	6.46%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.949e-01	1.0000	2560.0	11.39%	3108.8	11.59%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.908e-01	1.0000	553.0	2.46%	686.8	2.56%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.782e-01	1.0000	589.0	2.62%	731.5	2.73%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.735e-01	1.0000	254.0	1.13%	322.2	1.20%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.441e-01	1.0000	595.0	2.65%	742.4	2.77%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.347e-01	1.0000	59.0	0.26%	81.9	0.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.318e-01	1.0000	629.0	2.80%	785.3	2.93%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.210e-01	1.0000	167.0	0.74%	218.4	0.81%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.164e-01	1.0000	624.0	2.78%	781.0	2.91%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.107e-01	1.0000	334.0	1.49%	426.4	1.59%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.904e-02	1.0000	220.0	0.98%	286.2	1.07%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.904e-02	1.0000	220.0	0.98%	286.2	1.07%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-9.080e-02	1.0000	72.0	0.32%	101.0	0.38%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.099e-02	1.0000	127.0	0.57%	171.8	0.64%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.842e-02	1.0000	1240.0	5.52%	1539.5	5.74%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.387e-02	1.0000	68.0	0.30%	96.8	0.36%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.932e-02	1.0000	492.0	2.19%	629.5	2.35%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.892e-02	1.0000	101.0	0.45%	140.1	0.52%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-5.440e-02	1.0000	747.0	3.32%	944.6	3.52%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.321e-02	1.0000	186.0	0.83%	249.1	0.93%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.989e-02	1.0000	309.0	1.37%	404.1	1.51%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.614e-02	1.0000	2554.0	11.36%	3145.4	11.73%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-4.481e-02	1.0000	2275.0	10.12%	2808.5	10.47%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-4.405e-02	1.0000	1305.0	5.81%	1630.6	6.08%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.908e-02	1.0000	199.0	0.89%	269.0	1.00%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.908e-02	1.0000	847.0	3.77%	1072.1	4.00%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.845e-02	1.0000	76.0	0.34%	110.8	0.41%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.816e-02	1.0000	140.0	0.62%	193.2	0.72%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.653e-02	1.0000	3996.0	17.78%	4893.3	18.24%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.624e-02	1.0000	2203.0	9.80%	2726.9	10.17%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.528e-02	1.0000	163.0	0.73%	223.5	0.83%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-3.353e-02	1.0000	2990.0	13.30%	3681.9	13.73%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-3.223e-02	1.0000	112.0	0.50%	158.4	0.59%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.060e-02	1.0000	421.0	1.87%	549.0	2.05%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.001e-02	1.0000	78.0	0.35%	116.5	0.43%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.466e-02	1.0000	5481.0	24.39%	6710.1	25.01%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.307e-02	1.0000	3539.0	15.75%	4370.7	16.29%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.298e-02	1.0000	170.0	0.76%	239.0	0.89%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.277e-02	1.0000	1325.0	5.90%	1677.7	6.25%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.248e-02	1.0000	546.0	2.43%	715.2	2.67%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.072e-02	1.0000	2451.0	10.91%	3055.7	11.39%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.529e-03	1.0000	215.0	0.96%	300.5	1.12%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-7.686e-03	1.0000	301.0	1.34%	411.7	1.53%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.453e-03	1.0000	250.0	1.11%	346.4	1.29%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-7.441e-03	1.0000	155.0	0.69%	223.2	0.83%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-7.247e-03	1.0000	7929.0	35.28%	9673.6	36.06%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.474e-03	1.0000	69.0	0.31%	109.6	0.41%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.245e-03	1.0000	1647.0	7.33%	2084.8	7.77%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-6.228e-03	1.0000	2285.0	10.17%	2865.0	10.68%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.092e-03	1.0000	82.0	0.36%	127.1	0.47%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.781e-03	1.0000	1461.0	6.50%	1857.3	6.92%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.213e-03	1.0000	879.0	3.91%	1140.5	4.25%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.322e-03	1.0000	1952.0	8.69%	2464.2	9.19%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-3.626e-03	1.0000	719.0	3.20%	945.4	3.52%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.403e-03	1.0000	26.0	0.12%	50.6	0.19%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-3.326e-03	1.0000	516.0	2.30%	691.5	2.58%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.291e-03	1.0000	67.0	0.30%	109.4	0.41%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.794e-03	1.0000	1020.0	4.54%	1323.1	4.93%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.803e-03	1.0000	3793.0	16.88%	4724.5	17.61%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.686e-03	1.0000	32.0	0.14%	61.5	0.23%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.336e-03	1.0000	86.0	0.38%	140.0	0.52%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.089e-03	1.0000	127.0	0.57%	196.9	0.73%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.083e-03	1.0000	620.0	2.76%	833.3	3.11%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-9.010e-04	1.0000	1300.0	5.78%	1685.6	6.28%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.190e-04	1.0000	3054.0	13.59%	3843.5	14.33%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.340e-04	1.0000	477.0	2.12%	656.3	2.45%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.980e-04	1.0000	1180.0	5.25%	1541.7	5.75%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.060e-04	1.0000	312.0	1.39%	445.4	1.66%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.490e-04	1.0000	411.0	1.83%	574.7	2.14%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-4.030e-04	1.0000	5725.0	25.47%	7096.2	26.45%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.340e-04	1.0000	1364.0	6.07%	1778.0	6.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.910e-04	1.0000	691.0	3.07%	935.4	3.49%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.850e-04	1.0000	188.0	0.84%	287.8	1.07%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.740e-04	1.0000	368.0	1.64%	525.3	1.96%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.370e-04	1.0000	1533.0	6.82%	1998.0	7.45%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-9.800e-05	1.0000	2115.0	9.41%	2723.9	10.15%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.800e-05	1.0000	364.0	1.62%	528.3	1.97%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-4.000e-05	1.0000	1686.0	7.50%	2203.4	8.21%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.800e-05	1.0000	252.0	1.12%	381.3	1.42%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.900e-05	1.0000	2186.0	9.73%	2827.5	10.54%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.500e-05	1.0000	2808.0	12.49%	3596.5	13.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.500e-05	1.0000	2847.0	12.67%	3644.8	13.59%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.000e-06	1.0000	4735.0	21.07%	5970.9	22.26%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.000e-06	1.0000	1770.0	7.88%	2331.3	8.69%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.000e-06	1.0000	626.0	2.79%	886.8	3.31%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.000e-06	1.0000	1614.0	7.18%	2147.0	8.00%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.000e-06	1.0000	4904.0	21.82%	6208.9	23.15%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.000e-06	1.0000	1125.0	5.01%	1540.3	5.74%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.000e-06	1.0000	847.0	3.77%	1185.8	4.42%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	367.0	1.63%	559.9	2.09%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-0.000e+00	1.0000	2509.0	11.16%	3282.0	12.24%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	352.0	1.57%	545.8	2.03%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-0.000e+00	1.0000	555.0	2.47%	821.8	3.06%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-0.000e+00	1.0000	3487.0	15.52%	4516.1	16.84%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	702.0	3.12%	1016.0	3.79%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	5032.0	22.39%	6412.9	23.91%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-0.000e+00	1.0000	1137.0	5.06%	1580.7	5.89%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	2322.0	10.33%	3077.2	11.47%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-0.000e+00	1.0000	10622.0	47.26%	13166.0	49.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	333.0	1.48%	533.0	1.99%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-0.000e+00	1.0000	1249.0	5.56%	1745.5	6.51%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	3095.0	13.77%	4074.2	15.19%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-0.000e+00	1.0000	7333.0	32.63%	9262.0	34.53%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-0.000e+00	1.0000	4051.0	18.03%	5260.2	19.61%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	6134.0	27.29%	7837.7	29.22%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	8412.0	37.43%	10599.9	39.52%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	2323.0	10.34%	3145.6	11.73%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-0.000e+00	1.0000	2423.0	10.78%	3285.4	12.25%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-0.000e+00	1.0000	3226.0	14.35%	4294.4	16.01%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	2190.0	9.74%	2995.2	11.17%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	1330.0	5.92%	1899.8	7.08%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-0.000e+00	1.0000	2087.0	9.29%	2876.6	10.72%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	3453.0	15.36%	4599.5	17.15%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	1611.0	7.17%	2285.4	8.52%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-0.000e+00	1.0000	564.0	2.51%	906.8	3.38%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-0.000e+00	1.0000	4137.0	18.41%	5483.2	20.44%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	904.0	4.02%	1375.9	5.13%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-0.000e+00	1.0000	5114.0	22.76%	6702.2	24.99%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-0.000e+00	1.0000	2392.0	10.64%	3311.3	12.34%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	592.0	2.63%	957.8	3.57%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	6791.0	30.22%	8771.3	32.70%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	209.0	0.93%	416.7	1.55%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	5237.0	23.30%	7163.2	26.70%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2359.0	10.50%	3374.9	12.58%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	5396.0	24.01%	7166.6	26.72%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	1337.0	5.95%	2100.3	7.83%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	1564.0	6.96%	2704.5	10.08%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	3679.0	16.37%	5364.8	20.00%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	1031.0	4.59%	1822.7	6.80%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	96.0	0.43%	336.1	1.25%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	6199.0	27.58%	8178.3	30.49%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	3904.0	17.37%	5437.9	20.27%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	513.0	2.28%	1022.8	3.81%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	11186.0	49.77%	14474.3	53.96%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	1348.0	6.00%	2246.4	8.37%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	741.0	3.30%	1204.1	4.49%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	2494.0	11.10%	3546.5	13.22%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	2269.0	10.10%	3305.0	12.32%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	6745.0	30.01%	8916.6	33.24%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	3293.0	14.65%	4487.8	16.73%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	1569.0	6.98%	2312.0	8.62%