Information for 9-RYWGSCAR (Motif 7)

T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
Reverse Opposite:
G A C T G C A T A C T G T A G C A T G C G C T A C T G A A G C T
p-value:1e-121
log p-value:-2.809e+02
Information Content per bp:1.593
Number of Target Sequences with motif7144.0
Percentage of Target Sequences with motif31.79%
Number of Background Sequences with motif6662.0
Percentage of Background Sequences with motif24.82%
Average Position of motif in Targets100.3 +/- 56.1bp
Average Position of motif in Background101.1 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:forward strand
Alignment:RYWGSCAR-
-TTGCCAAG
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A A C G T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:RYWGSCAR-
CGTGCCAAG
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-RYWGSCAR
VGCTGGCA-
 A C G T T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:RYWGSCAR
BCAGACWA
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RYWGSCAR--
GGTGCCAAGT
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:RYWGSCAR
RHTGWCAR
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-RYWGSCAR
ARNTGACA-
 A C G T T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RYWGSCAR---
NNTGCCAAGNN
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RYWGSCAR--
VBTGWCAGCB
 T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A A C G T A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-RYWGSCAR
TNNGGGCAG
 A C G T T C G A G A C T C G A T A T C G A T C G A G T C C G T A C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G