Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22477)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 26850)	% of Background Sequences with Motif
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-997	-2.296e+03	0.0000	8040.0	35.77%	4553.7	16.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-981	-2.260e+03	0.0000	8137.0	36.21%	4673.1	17.41%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-973	-2.241e+03	0.0000	9017.0	40.12%	5507.2	20.52%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-891	-2.052e+03	0.0000	6206.0	27.61%	3179.1	11.84%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-732	-1.686e+03	0.0000	1878.0	8.36%	418.7	1.56%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-729	-1.679e+03	0.0000	5937.0	26.42%	3267.6	12.17%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-691	-1.593e+03	0.0000	3320.0	14.77%	1302.1	4.85%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-688	-1.584e+03	0.0000	1709.0	7.60%	366.3	1.36%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-667	-1.536e+03	0.0000	1988.0	8.85%	517.7	1.93%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-657	-1.514e+03	0.0000	1328.0	5.91%	220.8	0.82%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-574	-1.324e+03	0.0000	2208.0	9.82%	721.2	2.69%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-506	-1.166e+03	0.0000	6534.0	29.07%	4350.5	16.21%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-468	-1.079e+03	0.0000	6553.0	29.16%	4480.9	16.69%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-457	-1.053e+03	0.0000	5985.0	26.63%	3975.2	14.81%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-433	-9.978e+02	0.0000	5091.0	22.65%	3219.8	12.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-432	-9.957e+02	0.0000	3379.0	15.04%	1757.5	6.55%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-415	-9.564e+02	0.0000	7947.0	35.36%	6047.8	22.53%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-330	-7.622e+02	0.0000	5033.0	22.39%	3470.4	12.93%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-321	-7.404e+02	0.0000	3775.0	16.80%	2348.4	8.75%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-224	-5.161e+02	0.0000	10237.0	45.55%	9441.3	35.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-213	-4.909e+02	0.0000	7014.0	31.21%	5958.1	22.20%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-134	-3.098e+02	0.0000	5178.0	23.04%	4460.8	16.62%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-126	-2.921e+02	0.0000	4502.0	20.03%	3801.9	14.16%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-112	-2.598e+02	0.0000	1099.0	4.89%	616.3	2.30%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-78	-1.802e+02	0.0000	1010.0	4.49%	633.4	2.36%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-75	-1.747e+02	0.0000	9653.0	42.95%	9915.2	36.94%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-73	-1.682e+02	0.0000	7085.0	31.53%	7006.4	26.10%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-68	-1.581e+02	0.0000	4309.0	19.17%	3986.2	14.85%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-68	-1.567e+02	0.0000	415.0	1.85%	184.0	0.69%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-65	-1.504e+02	0.0000	3113.0	13.85%	2744.3	10.22%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-64	-1.491e+02	0.0000	1316.0	5.86%	955.4	3.56%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-59	-1.376e+02	0.0000	9095.0	40.47%	9448.9	35.20%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-58	-1.349e+02	0.0000	10110.0	44.99%	10646.3	39.66%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-55	-1.285e+02	0.0000	9643.0	42.91%	10134.1	37.75%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-55	-1.279e+02	0.0000	4402.0	19.59%	4199.9	15.65%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-52	-1.218e+02	0.0000	3680.0	16.37%	3441.2	12.82%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-48	-1.125e+02	0.0000	5216.0	23.21%	5162.0	19.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-39	-9.142e+01	0.0000	3117.0	13.87%	2953.6	11.00%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-37	-8.671e+01	0.0000	3645.0	16.22%	3547.5	13.22%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-36	-8.335e+01	0.0000	5706.0	25.39%	5862.6	21.84%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-35	-8.262e+01	0.0000	2135.0	9.50%	1940.4	7.23%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-33	-7.723e+01	0.0000	5656.0	25.17%	5841.4	21.76%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-31	-7.353e+01	0.0000	1896.0	8.44%	1721.5	6.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-30	-6.967e+01	0.0000	2708.0	12.05%	2603.4	9.70%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-29	-6.750e+01	0.0000	7026.0	31.26%	7471.2	27.83%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-27	-6.423e+01	0.0000	1807.0	8.04%	1661.9	6.19%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-27	-6.394e+01	0.0000	5271.0	23.45%	5486.0	20.44%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-27	-6.296e+01	0.0000	3126.0	13.91%	3091.9	11.52%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-26	-6.206e+01	0.0000	1921.0	8.55%	1790.8	6.67%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-26	-6.078e+01	0.0000	1602.0	7.13%	1458.7	5.43%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-25	-5.891e+01	0.0000	2166.0	9.64%	2065.5	7.70%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-25	-5.824e+01	0.0000	1871.0	8.33%	1752.9	6.53%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-24	-5.611e+01	0.0000	326.0	1.45%	208.3	0.78%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-24	-5.575e+01	0.0000	1154.0	5.13%	1010.3	3.76%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-24	-5.560e+01	0.0000	2512.0	11.18%	2455.8	9.15%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-23	-5.459e+01	0.0000	1032.0	4.59%	889.1	3.31%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-23	-5.314e+01	0.0000	1337.0	5.95%	1208.8	4.50%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-22	-5.087e+01	0.0000	5356.0	23.83%	5672.7	21.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-21	-5.057e+01	0.0000	3335.0	14.84%	3390.7	12.63%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-21	-5.007e+01	0.0000	4802.0	21.37%	5046.8	18.80%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-21	-4.980e+01	0.0000	2684.0	11.94%	2673.7	9.96%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-21	-4.904e+01	0.0000	536.0	2.38%	412.3	1.54%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-20	-4.808e+01	0.0000	3293.0	14.65%	3358.1	12.51%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-20	-4.767e+01	0.0000	1019.0	4.53%	898.0	3.35%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-19	-4.446e+01	0.0000	2036.0	9.06%	1991.0	7.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-19	-4.402e+01	0.0000	2166.0	9.64%	2135.2	7.95%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-18	-4.353e+01	0.0000	1666.0	7.41%	1595.5	5.94%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-18	-4.259e+01	0.0000	2709.0	12.05%	2741.4	10.21%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-16	-3.868e+01	0.0000	1834.0	8.16%	1800.4	6.71%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-16	-3.808e+01	0.0000	2380.0	10.59%	2403.7	8.96%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-16	-3.778e+01	0.0000	296.0	1.32%	210.0	0.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-16	-3.746e+01	0.0000	1307.0	5.82%	1237.8	4.61%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.673e+01	0.0000	272.0	1.21%	189.7	0.71%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.673e+01	0.0000	272.0	1.21%	189.7	0.71%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-15	-3.669e+01	0.0000	1111.0	4.94%	1032.4	3.85%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-15	-3.638e+01	0.0000	3876.0	17.25%	4094.1	15.25%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-14	-3.438e+01	0.0000	1951.0	8.68%	1951.9	7.27%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-14	-3.426e+01	0.0000	2101.0	9.35%	2117.0	7.89%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-14	-3.426e+01	0.0000	1568.0	6.98%	1533.7	5.71%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-14	-3.383e+01	0.0000	1496.0	6.66%	1457.3	5.43%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-14	-3.343e+01	0.0000	3210.0	14.28%	3362.6	12.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-14	-3.264e+01	0.0000	665.0	2.96%	582.6	2.17%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-14	-3.232e+01	0.0000	7252.0	32.27%	8028.4	29.91%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-13	-3.041e+01	0.0000	172.0	0.77%	110.8	0.41%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-12	-2.800e+01	0.0000	139.0	0.62%	85.5	0.32%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-11	-2.636e+01	0.0000	917.0	4.08%	869.9	3.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-11	-2.570e+01	0.0000	480.0	2.14%	416.0	1.55%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-11	-2.548e+01	0.0000	1703.0	7.58%	1730.6	6.45%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-10	-2.450e+01	0.0000	202.0	0.90%	146.8	0.55%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-10	-2.444e+01	0.0000	736.0	3.27%	686.0	2.56%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-10	-2.332e+01	0.0000	158.0	0.70%	108.6	0.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.305e+01	0.0000	409.0	1.82%	351.2	1.31%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-9	-2.255e+01	0.0000	671.0	2.99%	624.9	2.33%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-9	-2.247e+01	0.0000	665.0	2.96%	618.9	2.31%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-9	-2.206e+01	0.0000	3067.0	13.65%	3293.0	12.27%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-9	-2.203e+01	0.0000	8282.0	36.85%	9359.8	34.87%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-8	-2.063e+01	0.0000	1234.0	5.49%	1242.2	4.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-8	-1.991e+01	0.0000	3524.0	15.68%	3836.4	14.29%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-8	-1.931e+01	0.0000	1347.0	5.99%	1375.4	5.12%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-8	-1.872e+01	0.0000	621.0	2.76%	587.6	2.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-8	-1.869e+01	0.0000	258.0	1.15%	213.0	0.79%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.853e+01	0.0000	135.0	0.60%	95.4	0.36%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-7	-1.827e+01	0.0000	1093.0	4.86%	1101.1	4.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.762e+01	0.0000	1227.0	5.46%	1253.9	4.67%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-7	-1.751e+01	0.0000	8693.0	38.68%	9909.7	36.92%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-7	-1.746e+01	0.0000	831.0	3.70%	819.4	3.05%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-7	-1.727e+01	0.0000	417.0	1.86%	378.1	1.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.726e+01	0.0000	1899.0	8.45%	2008.0	7.48%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-7	-1.679e+01	0.0000	654.0	2.91%	631.9	2.35%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-7	-1.679e+01	0.0000	123.0	0.55%	87.2	0.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.675e+01	0.0000	855.0	3.80%	849.6	3.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.627e+01	0.0000	1750.0	7.79%	1848.8	6.89%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-6	-1.611e+01	0.0000	2140.0	9.52%	2291.1	8.54%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-6	-1.602e+01	0.0000	1351.0	6.01%	1402.3	5.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-6	-1.572e+01	0.0000	5974.0	26.58%	6734.3	25.09%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-6	-1.507e+01	0.0000	2461.0	10.95%	2667.6	9.94%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.403e+01	0.0000	2680.0	11.92%	2929.4	10.91%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-6	-1.382e+01	0.0000	1779.0	7.92%	1902.5	7.09%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-5	-1.375e+01	0.0000	1921.0	8.55%	2064.2	7.69%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-5	-1.368e+01	0.0000	1377.0	6.13%	1450.0	5.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-5	-1.365e+01	0.0000	843.0	3.75%	854.5	3.18%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.332e+01	0.0000	1884.0	8.38%	2026.0	7.55%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.325e+01	0.0000	1333.0	5.93%	1403.1	5.23%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-5	-1.322e+01	0.0000	1723.0	7.67%	1844.9	6.87%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-5	-1.288e+01	0.0000	928.0	4.13%	953.4	3.55%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-5	-1.277e+01	0.0000	1122.0	4.99%	1170.5	4.36%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.275e+01	0.0000	2176.0	9.68%	2365.0	8.81%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-5	-1.255e+01	0.0000	3193.0	14.21%	3538.8	13.18%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-5	-1.233e+01	0.0000	23.0	0.10%	9.5	0.04%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-5	-1.219e+01	0.0000	2718.0	12.09%	2994.8	11.16%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-5	-1.177e+01	0.0000	1016.0	4.52%	1059.3	3.95%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-5	-1.176e+01	0.0000	6404.0	28.50%	7302.5	27.21%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.157e+01	0.0000	1416.0	6.30%	1511.8	5.63%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-4	-1.140e+01	0.0000	456.0	2.03%	444.0	1.65%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-4	-1.133e+01	0.0000	1807.0	8.04%	1958.8	7.30%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-1.123e+01	0.0000	1918.0	8.53%	2086.3	7.77%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-4	-1.055e+01	0.0001	452.0	2.01%	444.2	1.65%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.024e+01	0.0001	764.0	3.40%	789.5	2.94%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-4	-9.970e+00	0.0001	808.0	3.60%	840.0	3.13%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-9.921e+00	0.0002	3169.0	14.10%	3546.6	13.21%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-9.735e+00	0.0002	1961.0	8.73%	2152.3	8.02%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-4	-9.715e+00	0.0002	1831.0	8.15%	2003.3	7.46%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-4	-9.536e+00	0.0002	1905.0	8.48%	2090.0	7.79%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-9.291e+00	0.0003	3592.0	15.98%	4048.1	15.08%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-4	-9.231e+00	0.0003	2152.0	9.58%	2378.8	8.86%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-4	-9.221e+00	0.0003	523.0	2.33%	529.8	1.97%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-9.127e+00	0.0003	117.0	0.52%	97.6	0.36%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-3	-9.051e+00	0.0003	33.0	0.15%	19.3	0.07%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-3	-9.010e+00	0.0004	1310.0	5.83%	1415.8	5.27%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.999e+00	0.0004	539.0	2.40%	548.0	2.04%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-8.960e+00	0.0004	657.0	2.92%	679.4	2.53%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-3	-8.899e+00	0.0004	311.0	1.38%	300.3	1.12%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.885e+00	0.0004	34.0	0.15%	20.1	0.07%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-3	-8.759e+00	0.0004	132.0	0.59%	113.3	0.42%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-3	-8.629e+00	0.0005	731.0	3.25%	764.3	2.85%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-8.562e+00	0.0005	3901.0	17.36%	4421.5	16.47%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-8.367e+00	0.0007	566.0	2.52%	582.3	2.17%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.925e+00	0.0010	1216.0	5.41%	1319.6	4.92%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-3	-7.656e+00	0.0013	942.0	4.19%	1010.9	3.77%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.651e+00	0.0013	89.0	0.40%	73.1	0.27%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-3	-7.552e+00	0.0014	338.0	1.50%	336.0	1.25%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-3	-7.020e+00	0.0024	1501.0	6.68%	1657.0	6.17%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-6.950e+00	0.0026	1051.0	4.68%	1141.7	4.25%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-3	-6.918e+00	0.0027	941.0	4.19%	1016.9	3.79%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-6.739e+00	0.0032	124.0	0.55%	111.7	0.42%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-6.631e+00	0.0035	569.0	2.53%	598.5	2.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-6.601e+00	0.0036	1538.0	6.84%	1704.6	6.35%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.485e+00	0.0040	3138.0	13.96%	3566.2	13.29%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-6.473e+00	0.0040	127.0	0.57%	115.4	0.43%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-6.199e+00	0.0053	1529.0	6.80%	1699.8	6.33%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-6.197e+00	0.0053	349.0	1.55%	356.3	1.33%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-6.128e+00	0.0056	1214.0	5.40%	1337.7	4.98%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-6.041e+00	0.0061	386.0	1.72%	398.2	1.48%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.015e+00	0.0062	1805.0	8.03%	2021.0	7.53%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-2	-5.926e+00	0.0067	147.0	0.65%	138.6	0.52%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-5.869e+00	0.0071	1602.0	7.13%	1788.2	6.66%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.823e+00	0.0074	14.0	0.06%	7.1	0.03%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-2	-5.725e+00	0.0081	65.0	0.29%	54.9	0.20%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.671e+00	0.0085	2888.0	12.85%	3290.0	12.26%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.575e+00	0.0093	1486.0	6.61%	1658.9	6.18%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.475e+00	0.0102	862.0	3.84%	941.7	3.51%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-5.440e+00	0.0105	1294.0	5.76%	1438.6	5.36%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.404e+00	0.0108	1381.0	6.14%	1539.5	5.74%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-2	-5.285e+00	0.0121	589.0	2.62%	632.6	2.36%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-5.224e+00	0.0128	421.0	1.87%	443.5	1.65%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.133e+00	0.0140	985.0	4.38%	1086.2	4.05%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-5.127e+00	0.0140	463.0	2.06%	491.1	1.83%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e-2	-5.103e+00	0.0142	1882.0	8.37%	2125.6	7.92%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e-2	-4.768e+00	0.0198	3093.0	13.76%	3548.7	13.22%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-2	-4.756e+00	0.0199	1378.0	6.13%	1545.2	5.76%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-2	-4.655e+00	0.0219	198.0	0.88%	199.1	0.74%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-4.631e+00	0.0223	700.0	3.11%	765.6	2.85%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-4.601e+00	0.0229	225.0	1.00%	229.5	0.86%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-4.394e+00	0.0280	824.0	3.67%	910.5	3.39%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-4.212e+00	0.0334	1163.0	5.17%	1304.0	4.86%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-4.002e+00	0.0411	227.0	1.01%	235.2	0.88%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-3.993e+00	0.0412	2308.0	10.27%	2644.9	9.85%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-3.959e+00	0.0424	1051.0	4.68%	1178.6	4.39%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-3.937e+00	0.0431	619.0	2.75%	681.0	2.54%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.927e+00	0.0433	1808.0	8.04%	2060.9	7.68%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.914e+00	0.0437	624.0	2.78%	686.4	2.56%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.911e+00	0.0437	499.0	2.22%	543.8	2.03%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.852e+00	0.0460	371.0	1.65%	398.5	1.48%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.851e+00	0.0460	850.0	3.78%	947.5	3.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.768e+00	0.0496	626.0	2.79%	690.3	2.57%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-1	-3.659e+00	0.0550	1097.0	4.88%	1236.1	4.60%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-3.600e+00	0.0581	434.0	1.93%	472.2	1.76%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.395e+00	0.0709	333.0	1.48%	359.1	1.34%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.269e+00	0.0801	1418.0	6.31%	1617.8	6.03%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-3.152e+00	0.0896	2565.0	11.41%	2966.0	11.05%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.086e+00	0.0953	3699.0	16.46%	4306.3	16.04%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-3.082e+00	0.0953	774.0	3.44%	870.2	3.24%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.068e+00	0.0961	14.0	0.06%	10.2	0.04%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.060e+00	0.0964	4296.0	19.12%	5013.4	18.68%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.983e+00	0.1036	677.0	3.01%	759.9	2.83%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1	-2.973e+00	0.1042	2667.0	11.87%	3091.2	11.52%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.968e+00	0.1042	141.0	0.63%	146.1	0.54%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.796e+00	0.1232	1760.0	7.83%	2028.8	7.56%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.719e+00	0.1325	1474.0	6.56%	1694.4	6.31%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.698e+00	0.1347	454.0	2.02%	505.5	1.88%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.678e+00	0.1368	125.0	0.56%	130.8	0.49%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.619e+00	0.1445	342.0	1.52%	377.8	1.41%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.584e+00	0.1489	603.0	2.68%	679.4	2.53%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.567e+00	0.1507	119.0	0.53%	124.4	0.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.467e+00	0.1659	2358.0	10.49%	2741.0	10.21%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.465e+00	0.1659	1674.0	7.45%	1935.9	7.21%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.451e+00	0.1671	1604.0	7.14%	1853.3	6.90%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.449e+00	0.1671	86.0	0.38%	89.0	0.33%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.443e+00	0.1671	633.0	2.82%	716.2	2.67%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-1	-2.349e+00	0.1827	302.0	1.34%	334.2	1.25%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.237e+00	0.2035	655.0	2.91%	745.5	2.78%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.133e+00	0.2246	25.0	0.11%	23.4	0.09%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.131e+00	0.2246	739.0	3.29%	845.4	3.15%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.069e+00	0.2375	160.0	0.71%	174.6	0.65%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.053e+00	0.2404	47.0	0.21%	47.5	0.18%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.959e+00	0.2630	1709.0	7.60%	1990.6	7.42%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.945e+00	0.2654	2990.0	13.30%	3507.0	13.07%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.908e+00	0.2742	2288.0	10.18%	2676.3	9.97%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.858e+00	0.2871	627.0	2.79%	720.0	2.68%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.748e+00	0.3193	3061.0	13.62%	3598.8	13.41%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.736e+00	0.3218	112.0	0.50%	122.7	0.46%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.715e+00	0.3271	82.0	0.36%	88.4	0.33%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.696e+00	0.3321	2285.0	10.17%	2680.5	9.99%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.680e+00	0.3359	379.0	1.69%	432.4	1.61%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.612e+00	0.3584	171.0	0.76%	192.0	0.72%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.596e+00	0.3627	517.0	2.30%	595.5	2.22%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.593e+00	0.3627	97.0	0.43%	106.4	0.40%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.524e+00	0.3865	12.0	0.05%	11.0	0.04%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.500e+00	0.3942	362.0	1.61%	415.3	1.55%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.459e+00	0.4092	9.0	0.04%	8.3	0.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.445e+00	0.4134	506.0	2.25%	585.7	2.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.395e+00	0.4328	568.0	2.53%	659.0	2.46%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.329e+00	0.4602	17.0	0.08%	17.1	0.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.305e+00	0.4696	168.0	0.75%	191.3	0.71%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.129e+00	0.5578	408.0	1.82%	476.4	1.77%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.126e+00	0.5578	2554.0	11.36%	3024.7	11.27%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.121e+00	0.5583	131.0	0.58%	150.8	0.56%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.120e+00	0.5583	3796.0	16.89%	4503.8	16.78%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.051e+00	0.5937	2439.0	10.85%	2891.4	10.77%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.032e+00	0.6032	8.0	0.04%	8.1	0.03%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.028e+00	0.6032	7929.0	35.28%	9438.4	35.16%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.026e+00	0.6032	3442.0	15.32%	4087.8	15.23%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.026e+00	0.6032	164.0	0.73%	190.9	0.71%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.020e+00	0.6032	1805.0	8.03%	2138.9	7.97%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.001e+00	0.6102	201.0	0.89%	234.3	0.87%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.000e+00	0.6102	2320.0	10.32%	2752.0	10.25%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.990e-01	0.6102	3996.0	17.78%	4749.4	17.69%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-9.893e-01	0.6105	2275.0	10.12%	2699.7	10.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-9.292e-01	0.6459	894.0	3.98%	1058.6	3.94%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-9.006e-01	0.6622	1162.0	5.17%	1378.5	5.14%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-8.976e-01	0.6622	5.0	0.02%	5.4	0.02%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-8.297e-01	0.7056	1459.0	6.49%	1735.5	6.47%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.783e-01	0.7400	69.0	0.31%	81.9	0.31%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.721e-01	0.7419	837.0	3.72%	996.6	3.71%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.461e-01	0.7588	2140.0	9.52%	2552.5	9.51%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.386e-01	0.8418	553.0	2.46%	662.4	2.47%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.234e-01	0.8516	25.0	0.11%	30.3	0.11%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.750e-01	0.8906	667.0	2.97%	802.0	2.99%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.705e-01	0.8915	2451.0	10.91%	2937.0	10.94%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.698e-01	0.8915	3539.0	15.75%	4237.7	15.79%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.434e-01	0.9094	122.0	0.54%	148.4	0.55%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.084e-01	0.9385	71.0	0.32%	87.1	0.32%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-4.841e-01	0.9581	164.0	0.73%	200.3	0.75%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-4.362e-01	1.0000	976.0	4.34%	1179.3	4.39%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.177e-01	1.0000	82.0	0.36%	102.7	0.38%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.097e-01	1.0000	59.0	0.26%	75.0	0.28%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.891e-01	1.0000	32.0	0.14%	41.3	0.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.570e-01	1.0000	1542.0	6.86%	1865.1	6.95%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.699e-01	1.0000	15.0	0.07%	21.1	0.08%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.230e-01	1.0000	334.0	1.49%	417.6	1.56%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.221e-01	1.0000	170.0	0.76%	217.0	0.81%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.176e-01	1.0000	36.0	0.16%	49.6	0.18%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.146e-01	1.0000	143.0	0.64%	183.9	0.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.136e-01	1.0000	994.0	4.42%	1219.1	4.54%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.068e-01	1.0000	848.0	3.77%	1043.9	3.89%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.033e-01	1.0000	72.0	0.32%	95.2	0.35%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.004e-01	1.0000	422.0	1.88%	526.7	1.96%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.981e-01	1.0000	107.0	0.48%	139.9	0.52%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.803e-01	1.0000	14.0	0.06%	21.1	0.08%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.602e-01	1.0000	301.0	1.34%	381.6	1.42%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.595e-01	1.0000	883.0	3.93%	1091.4	4.07%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.405e-01	1.0000	264.0	1.17%	337.7	1.26%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.356e-01	1.0000	711.0	3.16%	885.1	3.30%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.114e-01	1.0000	516.0	2.30%	650.0	2.42%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.110e-01	1.0000	854.0	3.80%	1063.1	3.96%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.056e-01	1.0000	61.0	0.27%	85.0	0.32%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.982e-02	1.0000	691.0	3.07%	866.2	3.23%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-9.518e-02	1.0000	1325.0	5.90%	1639.4	6.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.558e-02	1.0000	88.0	0.39%	121.7	0.45%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.518e-02	1.0000	595.0	2.65%	751.1	2.80%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.010e-02	1.0000	215.0	0.96%	282.3	1.05%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.521e-02	1.0000	927.0	4.12%	1162.7	4.33%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-6.382e-02	1.0000	199.0	0.89%	264.9	0.99%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.347e-02	1.0000	537.0	2.39%	684.7	2.55%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.221e-02	1.0000	723.0	3.22%	913.8	3.40%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.875e-02	1.0000	67.0	0.30%	96.1	0.36%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.641e-02	1.0000	629.0	2.80%	799.5	2.98%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-5.332e-02	1.0000	163.0	0.73%	220.5	0.82%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.805e-02	1.0000	186.0	0.83%	250.1	0.93%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.624e-02	1.0000	45.0	0.20%	68.1	0.25%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.412e-02	1.0000	5481.0	24.39%	6678.9	24.88%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.042e-02	1.0000	1461.0	6.50%	1823.6	6.79%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.773e-02	1.0000	115.0	0.51%	161.2	0.60%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-3.587e-02	1.0000	747.0	3.32%	951.3	3.54%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.498e-02	1.0000	26.0	0.12%	43.1	0.16%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.644e-02	1.0000	1952.0	8.69%	2430.7	9.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.344e-02	1.0000	220.0	0.98%	299.4	1.12%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.344e-02	1.0000	220.0	0.98%	299.4	1.12%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.142e-02	1.0000	2203.0	9.80%	2740.6	10.21%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.116e-02	1.0000	2560.0	11.39%	3174.1	11.83%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.080e-02	1.0000	126.0	0.56%	179.8	0.67%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.030e-02	1.0000	75.0	0.33%	112.8	0.42%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.826e-02	1.0000	309.0	1.37%	414.4	1.54%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.546e-02	1.0000	1020.0	4.54%	1300.9	4.85%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.238e-02	1.0000	7.0	0.03%	17.1	0.06%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.067e-02	1.0000	299.0	1.33%	406.5	1.51%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-9.367e-03	1.0000	1686.0	7.50%	2126.7	7.92%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.792e-03	1.0000	1533.0	6.82%	1944.2	7.24%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.727e-03	1.0000	68.0	0.30%	109.5	0.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-4.191e-03	1.0000	1770.0	7.88%	2243.9	8.36%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.178e-03	1.0000	252.0	1.12%	353.0	1.32%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.806e-03	1.0000	101.0	0.45%	155.8	0.58%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.756e-03	1.0000	477.0	2.12%	641.1	2.39%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.579e-03	1.0000	10622.0	47.26%	12926.4	48.16%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.484e-03	1.0000	1647.0	7.33%	2095.7	7.81%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.285e-03	1.0000	140.0	0.62%	208.1	0.78%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.538e-03	1.0000	4735.0	21.07%	5861.3	21.84%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.529e-03	1.0000	127.0	0.57%	192.1	0.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.485e-03	1.0000	250.0	1.11%	354.1	1.32%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.449e-03	1.0000	411.0	1.83%	561.8	2.09%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-2.213e-03	1.0000	1300.0	5.78%	1674.1	6.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.151e-03	1.0000	364.0	1.62%	502.7	1.87%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.064e-03	1.0000	847.0	3.77%	1112.1	4.14%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.910e-03	1.0000	41.0	0.18%	74.5	0.28%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.848e-03	1.0000	167.0	0.74%	247.4	0.92%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.804e-03	1.0000	3054.0	13.59%	3828.2	14.26%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.344e-03	1.0000	1305.0	5.81%	1687.3	6.29%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.337e-03	1.0000	1180.0	5.25%	1532.3	5.71%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.234e-03	1.0000	492.0	2.19%	670.3	2.50%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.290e-04	1.0000	76.0	0.34%	127.4	0.47%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-7.350e-04	1.0000	5725.0	25.47%	7087.3	26.40%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-5.830e-04	1.0000	1240.0	5.52%	1617.0	6.02%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.030e-04	1.0000	548.0	2.44%	749.2	2.79%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-3.870e-04	1.0000	155.0	0.69%	239.4	0.89%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-3.270e-04	1.0000	254.0	1.13%	372.7	1.39%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.950e-04	1.0000	86.0	0.38%	145.8	0.54%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.680e-04	1.0000	78.0	0.35%	134.0	0.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.350e-04	1.0000	421.0	1.87%	592.1	2.21%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.340e-04	1.0000	188.0	0.84%	286.6	1.07%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.620e-04	1.0000	3793.0	16.88%	4774.4	17.79%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.430e-04	1.0000	2186.0	9.73%	2807.7	10.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.370e-04	1.0000	1125.0	5.01%	1490.4	5.55%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.300e-05	1.0000	127.0	0.57%	207.4	0.77%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.600e-05	1.0000	352.0	1.57%	509.7	1.90%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.600e-05	1.0000	239.0	1.06%	361.9	1.35%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.900e-05	1.0000	2148.0	9.56%	2775.6	10.34%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.500e-05	1.0000	1364.0	6.07%	1804.8	6.72%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.300e-05	1.0000	719.0	3.20%	993.1	3.70%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.500e-05	1.0000	3487.0	15.52%	4439.9	16.54%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.400e-05	1.0000	1137.0	5.06%	1528.2	5.69%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-6.000e-06	1.0000	2509.0	11.16%	3248.9	12.10%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.000e-06	1.0000	564.0	2.51%	807.3	3.01%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-3.000e-06	1.0000	7333.0	32.63%	9143.2	34.06%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.000e-06	1.0000	2423.0	10.78%	3155.1	11.75%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.000e-06	1.0000	4904.0	21.82%	6209.3	23.13%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.000e-06	1.0000	555.0	2.47%	803.0	2.99%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.000e-06	1.0000	1249.0	5.56%	1697.4	6.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.000e-06	1.0000	2808.0	12.49%	3646.2	13.58%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-0.000e+00	1.0000	312.0	1.39%	489.9	1.83%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	546.0	2.43%	802.3	2.99%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	3095.0	13.77%	4018.2	14.97%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	879.0	3.91%	1237.0	4.61%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	209.0	0.93%	348.7	1.30%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-0.000e+00	1.0000	2115.0	9.41%	2805.0	10.45%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	5032.0	22.39%	6410.5	23.88%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	367.0	1.63%	569.9	2.12%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	368.0	1.64%	571.3	2.13%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	2322.0	10.33%	3079.1	11.47%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-0.000e+00	1.0000	2847.0	12.67%	3735.8	13.92%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-0.000e+00	1.0000	620.0	2.76%	918.0	3.42%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	1614.0	7.18%	2198.1	8.19%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	2190.0	9.74%	2924.9	10.90%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	2323.0	10.34%	3099.5	11.55%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-0.000e+00	1.0000	4137.0	18.41%	5377.6	20.03%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-0.000e+00	1.0000	6134.0	27.29%	7826.3	29.16%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	333.0	1.48%	549.6	2.05%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-0.000e+00	1.0000	8412.0	37.43%	10597.0	39.48%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-0.000e+00	1.0000	3226.0	14.35%	4263.5	15.88%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-0.000e+00	1.0000	904.0	4.02%	1324.6	4.93%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	702.0	3.12%	1059.7	3.95%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-0.000e+00	1.0000	626.0	2.79%	958.1	3.57%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-0.000e+00	1.0000	4051.0	18.03%	5306.3	19.77%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	3293.0	14.65%	4368.3	16.27%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-0.000e+00	1.0000	2087.0	9.29%	2855.4	10.64%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-0.000e+00	1.0000	5114.0	22.76%	6625.8	24.68%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	1330.0	5.92%	1902.6	7.09%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-0.000e+00	1.0000	6791.0	30.22%	8709.7	32.45%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	592.0	2.63%	944.6	3.52%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	2359.0	10.50%	3250.0	12.11%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	3453.0	15.36%	4638.6	17.28%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	5396.0	24.01%	7061.5	26.31%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	741.0	3.30%	1164.3	4.34%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-0.000e+00	1.0000	1569.0	6.98%	2264.5	8.44%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	5237.0	23.30%	7103.8	26.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	1337.0	5.95%	2128.5	7.93%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	1564.0	6.96%	2755.2	10.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	3679.0	16.37%	5301.0	19.75%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	0.000e+00	1.0000	847.0	3.77%	1340.5	4.99%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	1031.0	4.59%	1907.4	7.11%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	96.0	0.43%	309.0	1.15%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	1611.0	7.17%	2355.5	8.78%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	6199.0	27.58%	8156.5	30.39%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	3904.0	17.37%	5393.1	20.09%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	513.0	2.28%	1046.7	3.90%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	0.000e+00	1.0000	2392.0	10.64%	3353.2	12.49%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	11186.0	49.77%	14511.6	54.06%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	1348.0	6.00%	2100.8	7.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	2494.0	11.10%	3488.4	13.00%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	2269.0	10.10%	3322.0	12.38%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	6745.0	30.01%	8762.9	32.65%