PeakID (cmd=annotatePeaks.pl DBR_with_annotation_ecoli_norm.bed mm10)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
h3k4me3_ko_wt_up-590	chrX	169979336	169980022	+	0	NA	promoter-TSS (NR_029457)	promoter-TSS (NR_029457)	-762	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA
h3k27ac_ko_wt_up-131	chr6	82595447	82595811	+	0	NA	Intergenic	Intergenic	57236	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding
h3k27ac_ko_wt_up-129	chr6	56455194	56455616	+	0	NA	Intergenic	Intergenic	-85771	NM_001159956	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding
h3k4me3_ko_wt_up-488	chr16	43235635	43236402	+	0	NA	intron (NM_001285805, intron 3 of 10)	intron (NM_001285805, intron 3 of 10)	-11266	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding
h3k4me3_ko_wt_up-281	chr8	40926137	40927399	+	0	NA	intron (NM_026840, intron 1 of 5)	intron (NM_026840, intron 1 of 5)	535	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding
h3k27me3_ko_wt_down-101	chr3	52024877	52025762	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	79687	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-489	chr16	43978631	43980443	+	0	NA	promoter-TSS (NM_001007460)	promoter-TSS (NM_001007460)	-487	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding
h3k27me3_ko_wt_up-256	chr11	64255319	64256842	+	0	NA	Intergenic	Intergenic	176596	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA
h3k27ac_ko_wt_up-128	chr6	53014446	53015432	+	0	NA	intron (NM_173406, intron 1 of 4)	intron (NM_173406, intron 1 of 4)	53685	NM_173406	231986	Mm.386865	NM_173406		Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding
h3k27me3_ko_wt_up-438	chrX	12074815	12076619	+	0	NA	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	4836	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_down-313	chr8	40190996	40193962	+	0	NA	intron (NR_035426, intron 1 of 5)	intron (NR_035426, intron 1 of 5)	35308	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA
h3k27me3_ko_wt_down-606	chr18	83441044	83442562	+	0	NA	Intergenic	Intergenic	-115919	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
h3k27me3_ko_wt_up-158	chr6	47031818	47032612	+	0	NA	intron (NM_001004357, intron 17 of 23)	intron (NM_001004357, intron 17 of 23)	-212181	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k27me3_ko_wt_down-602	chr18	38602313	38604899	+	0	NA	Intergenic	Intergenic	-2338	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-406	chr17	62175543	62177349	+	0	NA	Intergenic	Intergenic	704871	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
h3k4me3_het_wt_up	chr1	161195404	161196537	+	0	NA	Intergenic	Intergenic	-36656	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding
h3k4me3_ko_wt_down-16	chr2	60382980	60383577	+	0	NA	promoter-TSS (NM_013825)	promoter-TSS (NM_013825)	-47	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding
h3k4me3_ko_wt_up-140	chr4	35123879	35124965	+	0	NA	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-27633	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding
h3k4me3_ko_wt_down-196	chr18	37089883	37090632	+	0	NA	exon (NM_001003671, exon 1 of 4)	exon (NM_001003671, exon 1 of 4)	121	NM_001003671	353236	Mm.308500	NM_001003671	ENSMUSG00000007440	Pcdhac1	CNRc1	protocadherin alpha subfamily C, 1	protein-coding
h3k4me3_het_wt_down-17	chr17	30574819	30577236	+	0	NA	intron (NM_172618, intron 1 of 11)	CpG	260	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding
h3k27me3_ko_wt_down-254	chr6	29630417	29633469	+	0	NA	Intergenic	Intergenic	-22336	NM_177296	320938	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding
h3k27me3_ko_wt_down-309	chr8	38573102	38575757	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	87079	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k4me3_ko_wt_up-176	chr5	8819705	8820884	+	0	NA	intron (NM_011075, intron 8 of 27)	CT-rich|Low_complexity|Low_complexity	22147	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding
h3k27me3_ko_wt_down-504	chr14	100723686	100727026	+	0	NA	Intergenic	L1MC5a|LINE|L1	474713	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
h3k27me3_ko_wt_down-568	chr17	50498238	50498918	+	0	NA	Intergenic	Intergenic	-10969	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding
h3k4me3_ko_wt_down-4	chr1	39192549	39195960	+	0	NA	promoter-TSS (NM_008719)	promoter-TSS (NM_008719)	-18	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding
h3k4me3_ko_wt_down-29	chr2	178327378	178330854	+	0	NA	intron (NM_001177789, intron 9 of 12)	intron (NM_001177789, intron 9 of 12)	78542	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding
h3k27ac_ko_wt_down-217	chr11	38861655	38862249	+	0	NA	Intergenic	Intergenic	-341907	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	OTTMUSG00000005424	predicted gene 12130	ncRNA
h3k27ac_ko_wt_down-192	chr10	5208097	5208549	+	0	NA	Intergenic	Intergenic	-13616	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
h3k4me3_ko_wt_up-386	chr11	115373745	115374571	+	0	NA	Intergenic	Intergenic	-6439	NM_175454	217310	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding
h3k4me3_ko_wt_up-125	chr3	121952874	121955129	+	0	NA	intron (NM_172525, intron 1 of 22)	intron (NM_172525, intron 1 of 22)	675	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding
h3k27me3_ko_wt_down-346	chr10	19403371	19407588	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	48940	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
h3k27me3_ko_wt_down-342	chr9	96416062	96417217	+	0	NA	Intergenic	Intergenic	-52340	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding
h3k27ac_ko_wt_down-262	chr14	21534057	21534525	+	0	NA	intron (NM_001205241, intron 2 of 16)	intron (NM_001205241, intron 2 of 16)	34506	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
h3k4me3_ko_wt_up-138	chr4	23829372	23831154	+	0	NA	Intergenic	Intergenic	-666199	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k27me3_ko_wt_down-75	chr2	94932260	94933494	+	0	NA	Intergenic	L2c|LINE|L2	-494691	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
h3k4me3_ko_wt_up-496	chr17	3081740	3085145	+	0	NA	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	741	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo
h3k27ac_ko_wt_up-288	chrX	99137266	99139794	+	0	NA	intron (NM_010110, intron 1 of 4)	intron (NM_010110, intron 1 of 4)	2469	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding
h3k27me3_ko_wt_up-367	chr15	79251269	79253086	+	0	NA	exon (NM_020516, exon 5 of 6)	exon (NM_020516, exon 5 of 6)	2571	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding
h3k27ac_ko_wt_down-283	chr14	112028920	112030314	+	0	NA	intron (NR_030150, intron 2 of 3)	intron (NR_030150, intron 2 of 3)	8187	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
h3k27ac_ko_wt_up-289	chrX	105079515	105080177	+	0	NA	promoter-TSS (NM_026312)	promoter-TSS (NM_026312)	90	NM_001281871	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding
h3k4me3_ko_wt_up-139	chr4	24428590	24431029	+	0	NA	Intergenic	Intergenic	-66653	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k4me3_ko_wt_up-121	chr3	98015771	98016979	+	0	NA	intron (NM_010928, intron 1 of 33)	intron (NM_010928, intron 1 of 33)	2837	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding
h3k27me3_ko_wt_down-340	chr9	48537378	48538953	+	0	NA	Intergenic	Intergenic	42822	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding
h3k4me3_ko_wt_down-56	chr5	30944686	30946015	+	0	NA	promoter-TSS (NM_001160149)	promoter-TSS (NM_001160149)	77	NM_001160149	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding
h3k4me3_ko_wt_up-107	chr3	19693750	19695353	+	0	NA	intron (NM_205769, intron 1 of 1)	intron (NM_205769, intron 1 of 1)	845	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding
h3k27ac_ko_wt_down-67	chr3	52087918	52088556	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	16769	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-9	chr1	30055707	30059233	+	0	NA	Intergenic	Lx8b|LINE|L1	635982	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA
h3k4me3_ko_wt_up-534	chr18	36017500	36019182	+	0	NA	exon (NM_001167891, exon 10 of 10)	exon (NM_001167891, exon 10 of 10)	53511	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
h3k27me3_ko_wt_up-372	chr16	5747940	5748737	+	0	NA	Intergenic	Intergenic	-136455	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
h3k27me3_ko_wt_up-118	chr4	86056536	86057661	+	0	NA	intron (NM_029967, intron 1 of 27)	intron (NM_029967, intron 1 of 27)	3183	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
h3k27me3_ko_wt_up-460	chrX	94147399	94151225	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-25905	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_down-66	chr2	57614534	57617739	+	0	NA	Intergenic	Intergenic	377754	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
h3k4me3_ko_wt_down-111	chr8	106892145	106894256	+	0	NA	promoter-TSS (NM_011574)	promoter-TSS (NM_011574)	393	NM_145412	214987	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding
h3k27ac_ko_wt_down-86	chr4	17635276	17636548	+	0	NA	Intergenic	Intergenic	-217570	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
h3k27me3_ko_wt_down-384	chr11	34059250	34063709	+	0	NA	intron (NM_010696, intron 3 of 20)	Lx7|LINE|L1	14278	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|twm	lymphocyte cytosolic protein 2	protein-coding
h3k27me3_ko_wt_down-589	chr18	10448195	10452281	+	0	NA	intron (NM_001083628, intron 2 of 32)	intron (NM_001083628, intron 2 of 32)	125059	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
h3k27me3_ko_wt_down-600	chr18	26942517	26947168	+	0	NA	Intergenic	Intergenic	-1190859	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_down-575	chr17	65540328	65541154	+	0	NA	promoter-TSS (NM_001289486)	promoter-TSS (NM_001289486)	41	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding
h3k27ac_ko_wt_down-96	chr4	48770938	48772630	+	0	NA	Intergenic	Intergenic	108270	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding
h3k27ac_ko_wt_down-316	chr17	94001026	94002614	+	0	NA	Intergenic	MER34A1|LTR|ERV1	748072	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
h3k27me3_ko_wt_up-396	chr16	94178624	94182191	+	0	NA	intron (NM_139145, intron 5 of 9)	intron (NM_139145, intron 5 of 9)	95147	NM_011377	20465	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding
h3k4me3_het_wt_up-34	chr14	104336815	104337154	+	0	NA	Intergenic	(CGGAA)n|Simple_repeat|Simple_repeat	131015	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding
h3k27me3_ko_wt_up-216	chr9	60837840	60839066	+	0	NA	intron (NM_028283, intron 1 of 18)	(TCC)n|Simple_repeat|Simple_repeat	43905	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding
h3k4me3_ko_wt_up-398	chr12	81026539	81028852	+	0	NA	intron (NM_001146217, intron 1 of 12)	intron (NM_001146217, intron 1 of 12)	887	NM_001146217	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding
h3k4me3_ko_wt_up-344	chr10	128743129	128745160	+	0	NA	promoter-TSS (NM_016811)	promoter-TSS (NM_016811)	-88	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding
h3k27me3_ko_wt_down-487	chr14	87257329	87259350	+	0	NA	Intergenic	Intergenic	-117225	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
h3k4me3_ko_wt_down-184	chr17	6256839	6257621	+	0	NA	Intergenic	Intergenic	-13240	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding
h3k27me3_ko_wt_up-229	chr10	8935340	8938847	+	0	NA	Intergenic	Intergenic	-51023	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding
h3k27ac_ko_wt_down-72	chr3	79003660	79004510	+	0	NA	Intergenic	LTR107_Mam|LTR|LTR	140802	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
h3k27me3_ko_wt_down-47	chr1	143203728	143204256	+	0	NA	Intergenic	Intergenic	-436705	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
h3k4me3_ko_wt_up-67	chr2	75703220	75705083	+	0	NA	intron (NR_132727, intron 1 of 1)	CpG	512	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding
h3k27ac_ko_wt_down-289	chr15	20222051	20224383	+	0	NA	Intergenic	Intergenic	443533	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
h3k4me3_ko_wt_up-285	chr8	57498678	57499452	+	0	NA	intron (NR_126553, intron 2 of 3)	intron (NR_126553, intron 2 of 3)	-6750	NR_126556	78353	Mm.426240	NR_126553		2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA
h3k27me3_het_wt_up-2	chr2	77948161	77951883	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-3666	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-24	chr1	171067837	171068464	+	0	NA	Intergenic	Intergenic	-3498	NR_106103	102466998		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA
h3k27ac_ko_wt_up-135	chr6	128596612	128597276	+	0	NA	Intergenic	Intergenic	-15338	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding
h3k27me3_ko_wt_up-386	chr16	39985346	39986123	+	0	NA	Intergenic	Intergenic	1083389	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
h3k27ac_ko_wt_down-141	chr6	66936035	66937031	+	0	NA	intron (NM_001177557, intron 2 of 3)	intron (NM_001177557, intron 2 of 3)	39642	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding
h3k4me3_ko_wt_up-399	chr12	84217714	84219653	+	0	NA	intron (NM_001163501, intron 1 of 12)	CpG	198	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding
h3k27me3_ko_wt_up-186	chr7	68481773	68482806	+	0	NA	Intergenic	Intergenic	64865	NR_046208	71244	Mm.410787	NR_046208		4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA
h3k27ac_ko_wt_up-115	chr5	42635861	42636728	+	0	NA	Intergenic	Intergenic	568334	NR_131130	433882	Mm.319353	NR_131130		Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA
h3k27ac_ko_wt_up-14	chr1	56403845	56404863	+	0	NA	Intergenic	Intergenic	233097	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
h3k27ac_ko_wt_down-18	chr1	71682090	71682658	+	0	NA	Intergenic	Intergenic	29039	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA
h3k4me3_ko_wt_up-155	chr4	102588793	102591871	+	0	NA	intron (NM_001177981, intron 1 of 9)	intron (NM_001177981, intron 1 of 9)	489	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding
h3k27ac_ko_wt_down-319	chr18	20525851	20526206	+	0	NA	intron (NM_030596, intron 8 of 15)	intron (NM_030596, intron 8 of 15)	15724	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal|balding	desmoglein 3	protein-coding
h3k27me3_ko_wt_up-196	chr7	144737659	144738357	+	0	NA	intron (NM_178642, intron 1 of 25)	intron (NM_178642, intron 1 of 25)	584	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding
h3k4me3_het_wt_up-14	chr2	177497939	177498886	+	0	NA	intron (NR_036450, intron 1 of 4)	RMER17B|LTR|ERVK	186	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA
h3k4me3_ko_wt_up-572	chr19	61266513	61267289	+	0	NA	Intergenic	CpG	-38483	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding
h3k27ac_ko_wt_down-286	chr15	8990812	8992234	+	0	NA	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	23574	NM_198024	223332	Mm.321371	NM_198024		Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding
h3k27ac_ko_wt_up-242	chr15	60821926	60822962	+	0	NA	promoter-TSS (NR_030696)	promoter-TSS (NR_030696)	-521	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA
h3k27me3_ko_wt_down-216	chr5	26935653	26943662	+	0	NA	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	34879	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding
h3k27ac_ko_wt_up-60	chr2	135997568	135998355	+	0	NA	intron (NM_013829, intron 31 of 36)	intron (NM_013829, intron 31 of 36)	-59966	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding
h3k27me3_ko_wt_down-69	chr2	57913264	57918029	+	0	NA	Intergenic	Intergenic	-82509	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
h3k27me3_ko_wt_down-526	chr15	55132130	55134468	+	0	NA	promoter-TSS (NM_001037937)	promoter-TSS (NM_001037937)	-137	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
h3k27me3_ko_wt_up-288	chr13	7411483	7413727	+	0	NA	Intergenic	Intergenic	-763834	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding
h3k27ac_ko_wt_up-143	chr7	109328782	109330266	+	0	NA	intron (NM_054103, intron 8 of 13)	intron (NM_054103, intron 8 of 13)	109529	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding
h3k27me3_ko_wt_down-403	chr12	46650301	46655942	+	0	NA	Intergenic	Lx6|LINE|L1	165654	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k4me3_ko_wt_up-297	chr8	120492141	120493291	+	0	NA	intron (NM_198671, intron 1 of 15)	MIR|SINE|MIR	3850	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1	protein-coding
h3k27me3_ko_wt_down-522	chr15	51650646	51655768	+	0	NA	Intergenic	Intergenic	212254	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
h3k27me3_ko_wt_up-277	chr12	45010129	45012982	+	0	NA	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62928	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
h3k27me3_ko_wt_down-571	chr17	53731437	53734488	+	0	NA	intron (NR_073205, intron 7 of 7)	B4A|SINE|B4	16453	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA
h3k4me3_ko_wt_up-514	chr17	36110726	36111881	+	0	NA	exon (NM_001271005, exon 2 of 7)	exon (NM_001271005, exon 2 of 7)	373	NM_001271005	667803	Mm.477808	NM_001271005		C920025E04Rik	H2-T11	RIKEN cDNA C920025E04 gene	protein-coding
h3k27me3_ko_wt_down-212	chr5	21421474	21423019	+	0	NA	intron (NM_029195, intron 1 of 18)	intron (NM_029195, intron 1 of 18)	2431	NM_029195	75172	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding
h3k27me3_ko_wt_up-318	chr14	23281507	23285227	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-188796	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
h3k27me3_ko_wt_up-298	chr13	45237149	45238519	+	0	NA	Intergenic	Intergenic	-151908	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding
h3k27me3_ko_wt_up-172	chr6	118010686	118012226	+	0	NA	promoter-TSS (NM_001316749)	promoter-TSS (NM_001316749)	-81	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding
h3k27me3_ko_wt_down-419	chr12	89671259	89673375	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-140166	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27ac_ko_wt_up-59	chr2	134786373	134788050	+	0	NA	intron (NM_019677, intron 1 of 32)	intron (NM_019677, intron 1 of 32)	1047	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding
h3k27ac_ko_wt_up-161	chr9	12900758	12901312	+	0	NA	Intergenic	Intergenic	204820	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
h3k27ac_ko_wt_up-2	chr1	5018456	5019895	+	0	NA	promoter-TSS (NM_001290372)	promoter-TSS (NM_001290372)	364	NM_021374	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding
h3k27me3_ko_wt_down-63	chr2	56547638	56549050	+	0	NA	Intergenic	Intergenic	-237467	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
h3k27me3_ko_wt_down-174	chr4	70795978	70800887	+	0	NA	Intergenic	Intergenic	-263504	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
h3k27ac_ko_wt_down-328	chr19	12145704	12146217	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	-25286	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
h3k4me3_ko_wt_down-108	chr8	105325465	105327532	+	0	NA	promoter-TSS (NM_177449)	promoter-TSS (NM_177449)	134	NM_025486	66320	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding
h3k27ac_ko_wt_up-159	chr8	76137131	76137707	+	0	NA	Intergenic	Intergenic	688725	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
h3k27me3_ko_wt_down-243	chr5	99648871	99650635	+	0	NA	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	79307	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA
h3k4me3_ko_wt_up-119	chr3	96440753	96441248	+	0	NA	intron (NM_001256180, intron 2 of 4)	intron (NM_001256180, intron 2 of 4)	11306	NM_001256180	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding
h3k27ac_ko_wt_up-177	chr10	30600242	30600956	+	0	NA	exon (NM_028604, exon 1 of 13)	exon (NM_028604, exon 1 of 13)	150	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding
h3k27ac_het_wt_up-9	chr2	77945224	77946649	+	0	NA	intron (NM_030560, intron 1 of 20)	CpG	420	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-158	chr7	87486168	87486792	+	0	NA	intron (NM_011661, intron 1 of 4)	intron (NM_011661, intron 1 of 4)	6931	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding
h3k27ac_ko_wt_down-250	chr13	76877322	76878757	+	0	NA	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	257429	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
h3k27me3_ko_wt_up-167	chr6	64687406	64689662	+	0	NA	Intergenic	Intergenic	-40612	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-8	chr1	42491673	42492093	+	0	NA	Intergenic	CpG	202942	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
h3k27ac_ko_wt_down-313	chr17	62076803	62077844	+	0	NA	Intergenic	Intergenic	803994	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
h3k27ac_ko_wt_down-225	chr12	43641151	43641714	+	0	NA	Intergenic	L1MEf|LINE|L1	568636	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
h3k27ac_ko_wt_up-158	chr8	75458942	75459258	+	0	NA	intron (NM_027944, intron 1 of 12)	intron (NM_027944, intron 1 of 12)	10406	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
h3k27me3_ko_wt_down-227	chr5	51411545	51413684	+	0	NA	Intergenic	Intergenic	141307	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
h3k27ac_het_wt_down	chr4	85261104	85262068	+	0	NA	intron (NM_019535, intron 1 of 8)	intron (NM_019535, intron 1 of 8)	56130	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
h3k27me3_ko_wt_up-262	chr11	83443961	83446221	+	0	NA	intron (NM_172797, intron 4 of 7)	intron (NM_172797, intron 4 of 7)	7397	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding
h3k4me3_ko_wt_up-118	chr3	90322315	90323591	+	0	NA	Intergenic	Intergenic	-18701	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding
h3k4me3_ko_wt_down-200	chr18	81916298	81916946	+	0	NA	Intergenic	Intergenic	75458	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA
h3k27me3_ko_wt_down-517	chr15	32246290	32249302	+	0	NA	intron (NM_009154, intron 1 of 22)	intron (NM_009154, intron 1 of 22)	2983	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding
h3k27me3_ko_wt_up-516	chrX	169697628	169700990	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	14110	NM_010797	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding
h3k4me3_ko_wt_down-88	chr7	101421602	101423548	+	0	NA	intron (NM_001008548, intron 1 of 30)	intron (NM_001008548, intron 1 of 30)	884	NM_001143848	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding
h3k4me3_ko_wt_up-564	chr19	32107576	32108556	+	0	NA	Intergenic	Intergenic	-4926	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding
h3k27me3_het_wt_up-17	chr13	20127526	20134455	+	0	NA	intron (NM_080288, intron 1 of 21)	MLT2B3|LTR|ERVL	40483	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
h3k27me3_ko_wt_up-54	chr2	77959265	77963833	+	0	NA	Intergenic	Intergenic	-15193	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_down-98	chr8	25993184	25994424	+	0	NA	intron (NM_029037, intron 1 of 4)	intron (NM_029037, intron 1 of 4)	317	NM_029037	74653	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding
h3k4me3_ko_wt_up-442	chr14	54430531	54434098	+	0	NA	intron (NM_008608, intron 1 of 9)	CpG	710	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding
h3k27ac_ko_wt_up-106	chr4	88210823	88212049	+	0	NA	intron (NM_001081184, intron 11 of 43)	intron (NM_001081184, intron 11 of 43)	89396	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA
h3k4me3_ko_wt_down-77	chr6	124903467	124905092	+	0	NA	TTS (NM_008479)	TTS (NM_008479)	7426	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding
h3k27me3_ko_wt_down-598	chr18	26838747	26840299	+	0	NA	Intergenic	Intergenic	-1085540	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27ac_ko_wt_down-294	chr15	44377762	44378631	+	0	NA	intron (NM_001113554, intron 9 of 9)	L1MA4A|LINE|L1	-49915	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding
h3k4me3_ko_wt_down-199	chr18	80933232	80934188	+	0	NA	intron (NM_001201569, intron 1 of 29)	CpG	348	NM_015805	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding
h3k27me3_ko_wt_down-82	chr2	114869374	114874972	+	0	NA	Intergenic	Intergenic	-217245	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
h3k27ac_ko_wt_up-165	chr9	46782984	46784175	+	0	NA	Intergenic	Intergenic	-130024	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA
h3k27ac_ko_wt_down-164	chr7	100816973	100818827	+	0	NA	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	45513	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding
h3k4me3_ko_wt_up-168	chr4	142014786	142015908	+	0	NA	Intergenic	Intergenic	-2551	NR_131014	78917	Mm.139995	NR_131014		4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA
h3k27me3_ko_wt_up-93	chr2	179767180	179767798	+	0	NA	intron (NM_009867, intron 2 of 15)	intron (NM_009867, intron 2 of 15)	209157	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4a	135kDa|AI450312|TAFII130|TAFII135|Taf2c1	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor	protein-coding
h3k27me3_ko_wt_up-358	chr15	40928144	40929188	+	0	NA	intron (NM_011766, intron 4 of 7)	L2|LINE|L2	273624	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding
h3k4me3_ko_wt_down-62	chr5	112325935	112327123	+	0	NA	intron (NM_018783, intron 1 of 13)	CpG	160	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding
h3k27me3_ko_wt_up-443	chrX	12138400	12140142	+	0	NA	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	21075	NR_045434	72937	Mm.440386	NR_045434		2900008C10Rik	-	RIKEN cDNA 2900008C10 gene	ncRNA
h3k27me3_ko_wt_down-520	chr15	51069715	51071894	+	0	NA	Intergenic	MIRb|SINE|MIR	-180763	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
h3k4me3_ko_wt_up-169	chr4	142474013	142476203	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-235707	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding
h3k4me3_ko_wt_down-193	chr17	56997020	56998067	+	0	NA	exon (NM_027372, exon 1 of 3)	exon (NM_027372, exon 1 of 3)	204	NM_027372	66400	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB, alkylation repair homolog 7 (E. coli)	protein-coding
h3k27me3_ko_wt_down-538	chr16	57482124	57483958	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-66201	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
h3k4me3_ko_wt_up-4	chr1	37719044	37720286	+	0	NA	5' UTR (NM_028096, exon 1 of 10)	5' UTR (NM_028096, exon 1 of 10)	146	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding
h3k27me3_ko_wt_down-210	chr5	4535284	4537940	+	0	NA	Intergenic	Intergenic	221604	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-9	chr1	67175915	67179056	+	0	NA	intron (NM_001080809, intron 20 of 37)	intron (NM_001080809, intron 20 of 37)	54458	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
h3k27me3_ko_wt_up-421	chr18	76610385	76612689	+	0	NA	Intergenic	Intergenic	-244868	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding
h3k27me3_ko_wt_up-475	chrX	94638678	94639769	+	0	NA	TTS (NM_008179)	TTS (NM_008179)	3154	NM_008179	14853	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding
h3k27ac_ko_wt_down-238	chr13	8439254	8439746	+	0	NA	intron (NM_001289530, intron 1 of 9)	L1MA7|LINE|L1	236634	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27ac_ko_wt_down-130	chr6	27689068	27690730	+	0	NA	intron (NM_008174, intron 6 of 10)	intron (NM_008174, intron 6 of 10)	246851	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
h3k27me3_ko_wt_down-105	chr3	114902968	114906253	+	0	NA	promoter-TSS (NM_001286750)	promoter-TSS (NM_001286750)	-25	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding
h3k27me3_ko_wt_down	chr1	5015782	5018044	+	0	NA	intron (NM_001177795, intron 2 of 5)	ID_B1|SINE|B4	1821	NM_001290372	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding
h3k27ac_ko_wt_up-111	chr5	4891929	4893981	+	0	NA	intron (NM_001310448, intron 12 of 13)	intron (NM_001310448, intron 12 of 13)	-134739	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-151	chr4	89687924	89689668	+	0	NA	exon (NM_175647, exon 1 of 2)	exon (NM_175647, exon 1 of 2)	598	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
h3k27ac_ko_wt_down-58	chr2	155018977	155019771	+	0	NA	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5804	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding
h3k27me3_ko_wt_down-23	chr1	62426490	62431387	+	0	NA	intron (NM_001081050, intron 18 of 22)	intron (NM_001081050, intron 18 of 22)	-274379	NM_010939	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
h3k27me3_ko_wt_up-410	chr17	85392257	85395617	+	0	NA	intron (NM_028576, intron 5 of 10)	intron (NM_028576, intron 5 of 10)	224459	NR_038085	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA
h3k27me3_ko_wt_up-168	chr6	67113226	67114832	+	0	NA	Intergenic	Intergenic	-76622	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding
h3k27ac_ko_wt_up-178	chr10	30775713	30776441	+	0	NA	intron (NM_172495, intron 1 of 15)	intron (NM_172495, intron 1 of 15)	27030	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding
h3k27me3_ko_wt_down-177	chr4	72998165	73000349	+	0	NA	Intergenic	Intergenic	-146623	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding
h3k27me3_ko_wt_down-514	chr15	26574530	26578303	+	0	NA	intron (NM_176959, intron 2 of 3)	intron (NM_176959, intron 2 of 3)	267368	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
h3k27me3_ko_wt_down-319	chr8	53193776	53199837	+	0	NA	Intergenic	B4|SINE|B4	-314896	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
h3k27me3_ko_wt_down-18	chr1	61420166	61421298	+	0	NA	Intergenic	Intergenic	42300	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27ac_ko_wt_up-157	chr8	70041954	70043260	+	0	NA	promoter-TSS (NM_027481)	promoter-TSS (NM_027481)	127	NM_001167939	74549	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 chromatid cohesion factor homolog (C. elegans)	protein-coding
h3k27me3_ko_wt_down-224	chr5	49283451	49287253	+	0	NA	5' UTR (NM_001199244, exon 1 of 8)	5' UTR (NM_001199244, exon 1 of 8)	307	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
h3k4me3_ko_wt_up-117	chr3	87970847	87973467	+	0	NA	intron (NM_016701, intron 1 of 3)	intron (NM_016701, intron 1 of 3)	1064	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding
h3k27ac_ko_wt_up-179	chr10	31932116	31932925	+	0	NA	intron (NM_001013411, intron 4 of 6)	intron (NM_001013411, intron 4 of 6)	-322795	NM_001146349	268291	Mm.295212	NM_001146349		Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding
h3k27me3_ko_wt_up-266	chr11	91769393	91770615	+	0	NA	Intergenic	Intergenic	-192449	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
h3k27ac_ko_wt_down-265	chr14	38122212	38123324	+	0	NA	Intergenic	Intergenic	-775534	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
h3k27ac_ko_wt_down-195	chr10	12354156	12355019	+	0	NA	Intergenic	Intergenic	507148	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
h3k27me3_ko_wt_up-317	chr14	23276167	23279069	+	0	NA	Intergenic	Intergenic	-183047	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
h3k27me3_ko_wt_up-297	chr13	41783155	41785286	+	0	NA	intron (NM_001145875, intron 4 of 6)	ORR1E|LTR|ERVL-MaLR	63268	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding
h3k27ac_het_wt_up-12	chr2	78020402	78022065	+	0	NA	Intergenic	Intergenic	-29944	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-148	chr4	49802541	49808433	+	0	NA	intron (NM_001033351, intron 1 of 8)	intron (NM_001033351, intron 1 of 8)	40282	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
h3k27me3_ko_wt_down-111	chr3	126733616	126740168	+	0	NA	intron (NM_001293665, intron 4 of 19)	intron (NM_001293665, intron 4 of 19)	139941	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_up-192	chr7	131964435	131970085	+	0	NA	exon (NM_173410, exon 1 of 3)	exon (NM_173410, exon 1 of 3)	800	NM_173410	233919	Mm.208740	NM_173410		Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding
h3k27me3_ko_wt_up-305	chr13	64228284	64230793	+	0	NA	intron (NM_172587, intron 4 of 13)	B2_Mm2|SINE|B2	19000	NM_001122989	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding
h3k27me3_ko_wt_up-278	chr12	52473791	52474859	+	0	NA	Intergenic	Intergenic	-41752	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding
h3k4me3_ko_wt_up-298	chr9	21161065	21161539	+	0	NA	Intergenic	CpG	-4412	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding
h3k4me3_ko_wt_up-491	chr16	56064272	56064764	+	0	NA	Intergenic	Intergenic	-10886	NM_025483	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding
h3k4me3_ko_wt_up-244	chr7	30143299	30144331	+	0	NA	Intergenic	CpG	21867	NM_001081007	233060	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	5930415A09Rik|Znf382	zinc finger protein 382	protein-coding
h3k27me3_ko_wt_up-287	chr12	117401146	117402366	+	0	NA	Intergenic	Intergenic	-64744	NR_044987	432713	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA
h3k4me3_ko_wt_up-385	chr11	115250023	115250820	+	0	NA	exon (NM_010350, exon 15 of 15)	exon (NM_010350, exon 15 of 15)	16822	NM_010350	14813	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding
h3k4me3_ko_wt_up-299	chr9	22164452	22165440	+	0	NA	intron (NR_030448, intron 3 of 4)	CpG	8100	NM_001082532	66268	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding
h3k4me3_ko_wt_up-126	chr3	122419348	122421527	+	0	NA	intron (NM_013867, intron 1 of 11)	intron (NM_013867, intron 1 of 11)	657	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding
h3k27me3_ko_wt_up-182	chr7	36042666	36046122	+	0	NA	Intergenic	Intergenic	-241405	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding
h3k27me3_ko_wt_up-176	chr6	148047136	148048679	+	0	NA	intron (NM_178797, intron 1 of 12)	intron (NM_178797, intron 1 of 12)	491	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding
h3k4me3_ko_wt_up-552	chr18	69578992	69579902	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	233726	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27ac_ko_wt_down-276	chr14	91658279	91659928	+	0	NA	Intergenic	Intergenic	1532212	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
h3k27me3_ko_wt_down-612	chr19	14675499	14678313	+	0	NA	Intergenic	Intergenic	-78723	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
h3k27me3_ko_wt_up-80	chr2	162129915	162131162	+	0	NA	intron (NM_001291150, intron 7 of 30)	intron (NM_001291150, intron 7 of 30)	-260275	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
h3k27ac_ko_wt_down-17	chr1	71359713	71360193	+	0	NA	intron (NM_175210, intron 3 of 52)	intron (NM_175210, intron 3 of 52)	54957	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding
h3k4me3_ko_wt_up-175	chr4	156031065	156031936	+	0	NA	Intergenic	RLTR20B4_MM|LTR|ERVK	5158	NM_009400	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding
h3k27ac_ko_wt_up-63	chr2	143191938	143193736	+	0	NA	Intergenic	Intergenic	114345	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding
h3k27me3_ko_wt_down-29	chr1	78365798	78369542	+	0	NA	intron (NM_001004173, intron 2 of 4)	intron (NM_001004173, intron 2 of 4)	57324	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
h3k27me3_ko_wt_up-62	chr2	78117457	78119507	+	0	NA	intron (NR_108098, intron 2 of 6)	Lx7|LINE|L1	67305	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-616	chr19	17595413	17596992	+	0	NA	intron (NM_001190483, intron 10 of 37)	intron (NM_001190483, intron 10 of 37)	202159	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding
h3k27me3_ko_wt_down-303	chr8	30920712	30922440	+	0	NA	Intergenic	Intergenic	-168086	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
h3k27me3_ko_wt_up-444	chrX	12155194	12156346	+	0	NA	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	4576	NR_045434	72937	Mm.440386	NR_045434		2900008C10Rik	-	RIKEN cDNA 2900008C10 gene	ncRNA
h3k27me3_ko_wt_down-610	chr18	87913022	87920717	+	0	NA	Intergenic	Intergenic	977338	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
h3k4me3_ko_wt_up-171	chr4	147808638	147810071	+	0	NA	intron (NM_001127189, intron 1 of 5)	intron (NM_001127189, intron 1 of 5)	434	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Gm13157	OTTMUSG00000010679	predicted gene 13157	protein-coding
h3k27ac_ko_wt_down-57	chr2	154613885	154614397	+	0	NA	intron (NM_199304, intron 1 of 14)	intron (NM_199304, intron 1 of 14)	773	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding
h3k27me3_ko_wt_up-485	chrX	103449533	103452213	+	0	NA	intron (NR_002844, intron 3 of 3)	MLT1D|LTR|ERVL-MaLR	19356	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA
h3k4me3_ko_wt_down-66	chr5	139149408	139151059	+	0	NA	promoter-TSS (NM_001081265)	promoter-TSS (NM_001081265)	10	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal, assembly factor 5	protein-coding
h3k4me3_ko_wt_down-110	chr8	105965247	105966365	+	0	NA	intron (NM_009195, intron 1 of 23)	CpG	309	NR_045594	20498	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding
h3k27me3_ko_wt_up-495	chrX	104982281	104984222	+	0	NA	Intergenic	Intergenic	86873	NR_015467	71445	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA
h3k27ac_ko_wt_down-140	chr6	61119489	61120483	+	0	NA	Intergenic	Intergenic	-60339	NM_001164316	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding
h3k4me3_ko_wt_up-167	chr4	141998124	141998795	+	0	NA	intron (NM_177868, intron 2 of 31)	intron (NM_177868, intron 2 of 31)	13192	NM_177868	329977	Mm.252019	NM_028429	ENSMUSG00000051435	Fhad1	2900090M10Rik|B230311F11	forkhead-associated (FHA) phosphopeptide binding domain 1	protein-coding
h3k4me3_ko_wt_up-381	chr11	102248804	102249076	+	0	NA	promoter-TSS (NM_153544)	promoter-TSS (NM_153544)	58	NM_153544	217216	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding
h3k27me3_het_wt_down-23	chrX	152183235	152185487	+	0	NA	intron (NM_001005475, intron 2 of 13)	B1_Mur4|SINE|Alu	5352	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding
h3k27me3_ko_wt_up-357	chr15	37458446	37459676	+	0	NA	intron (NM_001170867, intron 1 of 4)	intron (NM_001170867, intron 1 of 4)	321	NM_001170868	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding
h3k4me3_ko_wt_up-495	chr16	94125042	94126051	+	0	NA	exon (NM_011377, exon 11 of 11)	exon (NM_011377, exon 11 of 11)	40286	NM_011377	20465	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-248	chr13	54390223	54391546	+	0	NA	Intergenic	Intergenic	19535	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding
h3k4me3_ko_wt_up-286	chr8	70597939	70598882	+	0	NA	intron (NM_133772, intron 14 of 16)	CpG	3929	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding
h3k27ac_ko_wt_up-136	chr6	134058604	134059373	+	0	NA	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	23288	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding
h3k27me3_ko_wt_up-149	chr6	27976271	27978043	+	0	NA	intron (NM_008174, intron 3 of 10)	intron (NM_008174, intron 3 of 10)	-40407	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
h3k27me3_ko_wt_up-12	chr1	77193985	77195681	+	0	NA	Intergenic	L1M5|LINE|L1	301935	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA
h3k27me3_ko_wt_up-130	chr5	38023916	38028564	+	0	NA	Intergenic	Intergenic	-12990	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding
h3k27me3_ko_wt_down-72	chr2	83622356	83624403	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-21199	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
h3k27me3_ko_wt_up-200	chr8	48981017	48982316	+	0	NA	Intergenic	Intergenic	-306976	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding
h3k27me3_ko_wt_up-512	chrX	152325076	152326358	+	0	NA	intron (NR_040269, intron 2 of 2)	B1_Mm|SINE|Alu	1776	NR_040270	72997	Mm.254833	NR_040269		Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA
h3k27me3_ko_wt_down-583	chr18	5149507	5153851	+	0	NA	Intergenic	ID_B1|SINE|B4	105090	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding
h3k4me3_ko_wt_up-62	chr2	70474709	70475634	+	0	NA	5' UTR (NM_022435, exon 1 of 2)	5' UTR (NM_022435, exon 1 of 2)	248	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding
h3k4me3_ko_wt_down-78	chr6	128763081	128765237	+	0	NA	Intergenic	4.5SRNA|scRNA|scRNA	24482	NM_001159904	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding
h3k27ac_ko_wt_down-124	chr6	6577468	6579085	+	0	NA	intron (NM_009169, intron 1 of 2)	intron (NM_009169, intron 1 of 2)	382	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
h3k27me3_ko_wt_up-74	chr2	105481693	105484606	+	0	NA	Intergenic	Intergenic	-83830	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
h3k4me3_ko_wt_down-97	chr8	22165604	22166824	+	0	NA	intron (NM_011848, intron 1 of 15)	CpG	221	NM_011848	23954	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding
h3k4me3_ko_wt_down-87	chr7	91542411	91544689	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	452764	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-450	chrX	43426659	43428422	+	0	NA	Intergenic	Intergenic	-152756	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding
h3k27ac_ko_wt_down-2	chr1	9207014	9208365	+	0	NA	intron (NM_001290390, intron 1 of 20)	intron (NM_001290390, intron 1 of 20)	92188	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
h3k4me3_ko_wt_up-522	chr17	68840727	68842208	+	0	NA	exon (NM_001206661, exon 2 of 2)	exon (NM_001206661, exon 2 of 2)	4331	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding
h3k27ac_ko_wt_down-49	chr2	98901470	98902610	+	0	NA	Intergenic	Intergenic	1434383	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_down-35	chr3	96414104	96415091	+	0	NA	non-coding (NR_001579, exon 1 of 1)	non-coding (NR_001579, exon 1 of 1)	236	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA
h3k27me3_ko_wt_down-409	chr12	47651372	47653177	+	0	NA	Intergenic	Intergenic	649188	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
h3k27ac_ko_wt_down-30	chr1	162083699	162085082	+	0	NA	intron (NM_172646, intron 15 of 19)	intron (NM_172646, intron 15 of 19)	79421	NR_040562	72753	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA
h3k4me3_ko_wt_down-12	chr1	192190514	192193074	+	0	NA	intron (NM_010600, intron 1 of 10)	intron (NM_010600, intron 1 of 10)	1017	NM_010600	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding
h3k27me3_ko_wt_down-507	chr14	105541945	105543565	+	0	NA	Intergenic	Intergenic	43967	NR_045921	74864	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA
h3k4me3_ko_wt_down-201	chr18	88971072	88972741	+	0	NA	promoter-TSS (NR_105777)	promoter-TSS (NR_105777)	116	NM_175542	246102	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding
h3k4me3_het_wt_up-22	chr6	131377408	131377731	+	0	NA	intron (NM_139117, intron 5 of 9)	B1F|SINE|Alu	10881	NM_011733	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding
h3k27me3_ko_wt_down-442	chr13	8775819	8780519	+	0	NA	Intergenic	Intergenic	92875	NM_172445	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
h3k27me3_ko_wt_down-257	chr6	67401550	67404333	+	0	NA	Intergenic	Intergenic	-26804	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding
h3k27ac_ko_wt_down-222	chr12	34052144	34053892	+	0	NA	intron (NM_001271386, intron 27 of 27)	intron (NM_001271386, intron 27 of 27)	95347	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding
h3k27me3_ko_wt_up-330	chr14	98507952	98510505	+	0	NA	Intergenic	Intergenic	-339463	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-7	chr1	41889957	41891972	+	0	NA	Intergenic	Intergenic	-709712	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
h3k27ac_ko_wt_down-251	chr13	77528399	77531259	+	0	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	-178861	NM_138312	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
h3k4me3_het_wt_down-22	chrX	114473721	114475509	+	0	NA	exon (NM_172781, exon 1 of 11)	exon (NM_172781, exon 1 of 11)	282	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding
h3k27ac_ko_wt_up-66	chr2	162499573	162499998	+	0	NA	intron (NM_001291150, intron 1 of 30)	intron (NM_001291150, intron 1 of 30)	108972	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA
h3k27me3_ko_wt_up-32	chr1	183169132	183170005	+	0	NA	intron (NM_001278219, intron 2 of 8)	intron (NM_001278219, intron 2 of 8)	-22011	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-156	chr4	103324859	103326067	+	0	NA	intron (NM_025909, intron 5 of 8)	intron (NM_025909, intron 5 of 8)	11617	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 homolog, zinc metallopeptidase (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-349	chr15	13100111	13102764	+	0	NA	intron (NM_007666, intron 1 of 11)	intron (NM_007666, intron 1 of 11)	72238	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
h3k27ac_ko_wt_up-116	chr5	46235730	46236029	+	0	NA	Intergenic	Intergenic	-303470	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
h3k27me3_ko_wt_down-446	chr13	13880237	13881651	+	0	NA	Intergenic	Intergenic	-73730	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding
h3k27me3_ko_wt_up-252	chr11	43978075	43982007	+	0	NA	Intergenic	Intergenic	-78804	NM_001284380	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding
h3k27me3_ko_wt_up-157	chr6	43174163	43175386	+	0	NA	promoter-TSS (NR_126471)	promoter-TSS (NR_126471)	84	NR_126471	75520	Mm.416852	NR_126471		1700024N05Rik	-	RIKEN cDNA 1700024N05 gene	ncRNA
h3k27ac_ko_wt_up-101	chr4	24801321	24801981	+	0	NA	intron (NM_001033531, intron 1 of 9)	intron (NM_001033531, intron 1 of 9)	49435	NM_001033531	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding
h3k27me3_ko_wt_down-249	chr6	4400567	4402228	+	0	NA	Intergenic	Intergenic	-104300	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding
h3k27me3_ko_wt_down-202	chr4	111862190	111864567	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	39418	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k27me3_ko_wt_up-402	chr17	46455652	46456398	+	0	NA	intron (NM_001162864, intron 13 of 14)	intron (NM_001162864, intron 13 of 14)	-17548	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding
h3k27me3_ko_wt_up-437	chrX	12067619	12068860	+	0	NA	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	12314	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_down-552	chr16	83706090	83708036	+	0	NA	Intergenic	Intergenic	-664080	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k4me3_ko_wt_up-487	chr16	39109632	39110212	+	0	NA	Intergenic	Intergenic	207577	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
h3k27me3_ko_wt_down-413	chr12	52780635	52784452	+	0	NA	intron (NM_198111, intron 1 of 13)	Lx9|LINE|L1	83160	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
h3k27me3_ko_wt_down-556	chr16	86310387	86312941	+	0	NA	Intergenic	Intergenic	-410539	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
h3k27me3_ko_wt_down-206	chr4	114884667	114886261	+	0	NA	Intergenic	Intergenic	23434	NM_008593	17301	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding
h3k27ac_ko_wt_up-127	chr6	48395075	48396566	+	0	NA	5' UTR (NM_133922, exon 1 of 18)	5' UTR (NM_133922, exon 1 of 18)	234	NM_133922	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding
h3k27me3_ko_wt_down-484	chr14	52036249	52037873	+	0	NA	promoter-TSS (NM_001001808)	promoter-TSS (NM_001001808)	-952	NM_001001808	258420	Mm.377946	NM_001001808	ENSMUSG00000044286	Olfr221	MOR205-1|MOR205-2|Olfr1514|Olfr221-ps1	olfactory receptor 221	protein-coding
h3k27ac_ko_wt_down-92	chr4	31392378	31394325	+	0	NA	Intergenic	Intergenic	-570756	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27ac_ko_wt_up-61	chr2	141151960	141152949	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-480978	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
h3k27me3_ko_wt_down-200	chr4	111847017	111848299	+	0	NA	Intergenic	RMER19B|LTR|ERVK	55138	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k27me3_ko_wt_down-550	chr16	83695366	83697549	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-674686	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k4me3_ko_wt_up-58	chr2	45096656	45098064	+	0	NA	intron (NM_001289521, intron 1 of 8)	intron (NM_001289521, intron 1 of 8)	12917	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding
h3k4me3_ko_wt_down-174	chr15	43167485	43171283	+	0	NA	intron (NM_172815, intron 2 of 5)	intron (NM_172815, intron 2 of 5)	1434	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding
h3k27ac_ko_wt_up-166	chr9	67795056	67796100	+	0	NA	Intergenic	Intergenic	36141	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding
h3k4me3_ko_wt_up-397	chr12	75389614	75390198	+	0	NA	intron (NM_023275, intron 2 of 4)	intron (NM_023275, intron 2 of 4)	26875	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding
h3k4me3_ko_wt_up-65	chr2	74426690	74427171	+	0	NA	Intergenic	Intergenic	-119213	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA
h3k27ac_ko_wt_down-279	chr14	102705427	102708057	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	275890	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
h3k27ac_ko_wt_down-82	chr4	5508928	5510189	+	0	NA	Intergenic	Intergenic	-122770	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA
h3k27me3_ko_wt_down-26	chr1	70437547	70450680	+	0	NA	intron (NM_029160, intron 14 of 16)	MIRb|SINE|MIR	-281602	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
h3k4me3_ko_wt_up-504	chr17	17909750	17910782	+	0	NA	Intergenic	CpG	22442	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding
h3k27me3_ko_wt_up-376	chr16	13026903	13027844	+	0	NA	Intergenic	Intergenic	-82363	NM_015769	50505	Mm.287837	NM_015769		Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding
h3k27ac_ko_wt_up-105	chr4	87210476	87211394	+	0	NA	intron (NM_001110240, intron 1 of 9)	intron (NM_001110240, intron 1 of 9)	17028	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding
h3k4me3_ko_wt_up-583	chrX	123102748	123105430	+	0	NA	intron (NM_001310652, intron 1 of 1)	MMERVK10C-int|LTR|ERVK	566	NM_028426	73061	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	-	claudin 34C1	protein-coding
h3k4me3_het_wt_up-8	chr2	98662411	98662804	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	1194950	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27me3_ko_wt_up-382	chr16	30233082	30235820	+	0	NA	Intergenic	Intergenic	33081	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding
h3k27me3_ko_wt_down-37	chr1	102371499	102373531	+	0	NA	Intergenic	Intergenic	1216747	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27ac_ko_wt_down-332	chr19	37975926	37976334	+	0	NA	intron (NM_001099634, intron 13 of 52)	intron (NM_001099634, intron 13 of 52)	67447	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
h3k27ac_ko_wt_down-76	chr3	109635726	109636847	+	0	NA	intron (NM_020505, intron 20 of 26)	intron (NM_020505, intron 20 of 26)	62279	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding
h3k27ac_ko_wt_down-131	chr6	27952796	27953346	+	0	NA	intron (NM_008174, intron 3 of 10)	intron (NM_008174, intron 3 of 10)	-16321	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
h3k27me3_ko_wt_down-115	chr3	126785239	126793229	+	0	NA	intron (NM_001293665, intron 9 of 19)	L1_Mus3|LINE|L1	154152	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
h3k27ac_ko_wt_down-107	chr5	34949160	34950167	+	0	NA	intron (NM_173402, intron 1 of 16)	CpG	215	NM_173402	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding
h3k27me3_ko_wt_up-500	chrX	120289694	120292800	+	0	NA	intron (NR_073452, intron 1 of 6)	intron (NR_073452, intron 1 of 6)	920	NR_073452	245578	Mm.39691	NM_001081385	ENSMUSG00000034755	Pcdh11x	PCDHX|PCDHX11|Pcdh11	protocadherin 11 X-linked	protein-coding
h3k27me3_ko_wt_up-105	chr3	101081351	101083065	+	0	NA	intron (NM_011197, intron 1 of 8)	MER112|DNA|hAT-Charlie	27958	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27me3_ko_wt_up-392	chr16	76317178	76320864	+	0	NA	intron (NM_173440, intron 3 of 3)	intron (NM_173440, intron 3 of 3)	54028	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding
h3k27me3_ko_wt_up-212	chr8	114930686	114933473	+	0	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	492427	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
h3k27me3_ko_wt_up-235	chr10	64909059	64910827	+	0	NA	intron (NM_001164376, intron 15 of 17)	intron (NM_001164376, intron 15 of 17)	-819688	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
h3k4me3_ko_wt_down-157	chr13	25115401	25116299	+	0	NA	intron (NM_177577, intron 6 of 9)	intron (NM_177577, intron 6 of 9)	59846	NM_001195617	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding
h3k27me3_ko_wt_up-117	chr4	39080905	39081902	+	0	NA	Intergenic	Intergenic	-368890	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding
h3k27me3_ko_wt_down-387	chr11	39739384	39744752	+	0	NA	Intergenic	Intergenic	-351843	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
h3k27ac_ko_wt_down-68	chr3	61255014	61256281	+	0	NA	Intergenic	Intergenic	-108860	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
h3k27me3_ko_wt_down-440	chr13	8719862	8724394	+	0	NA	intron (NM_001289530, intron 7 of 9)	intron (NM_001289530, intron 7 of 9)	148916	NM_172445	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
h3k4me3_ko_wt_up-109	chr3	34562815	34564081	+	0	NA	intron (NR_015580, intron 2 of 4)	intron (NR_015580, intron 2 of 4)	3067	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
h3k4me3_ko_wt_up-108	chr3	33141649	33143459	+	0	NA	intron (NM_001163516, intron 1 of 12)	intron (NM_001163516, intron 1 of 12)	637	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding
h3k4me3_ko_wt_up-137	chr4	23826947	23828860	+	0	NA	Intergenic	Intergenic	-668559	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k27ac_ko_wt_up-287	chrX	75734575	75735019	+	0	NA	intron (NR_029443, intron 7 of 8)	intron (NR_029443, intron 7 of 8)	29902	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik	RIKEN cDNA 4933407K13 gene	ncRNA
h3k4me3_ko_wt_down-52	chr4	143411989	143413394	+	0	NA	5' UTR (NM_172877, exon 1 of 5)	5' UTR (NM_172877, exon 1 of 5)	265	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding
h3k27ac_ko_wt_up-9	chr1	47445492	47446250	+	0	NA	Intergenic	Intergenic	21254	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA
h3k27me3_ko_wt_up-368	chr15	80461705	80463583	+	0	NA	intron (NM_001163189, intron 5 of 5)	intron (NM_001163189, intron 5 of 5)	97826	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
h3k27ac_ko_wt_up-3	chr1	6440905	6441901	+	0	NA	Intergenic	CpG	-45828	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
h3k27ac_ko_wt_down-273	chr14	85507454	85507800	+	0	NA	Intergenic	Intergenic	-738343	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
h3k27me3_ko_wt_down-85	chr2	126144274	126149522	+	0	NA	intron (NM_029455, intron 1 of 16)	intron (NM_029455, intron 1 of 16)	5106	NM_029455	75823	Mm.444732	NM_029455	ENSMUSG00000027209	Fam227b	4930525F21Rik	family with sequence similarity 227, member B	protein-coding
h3k4me3_ko_wt_down-64	chr5	123906683	123907959	+	0	NA	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	46	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding
h3k27me3_ko_wt_up-361	chr15	42413666	42414513	+	0	NA	Intergenic	Intergenic	262888	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
h3k4me3_ko_wt_up-321	chr10	24711141	24712623	+	0	NA	exon (NM_008813, exon 1 of 25)	exon (NM_008813, exon 1 of 25)	277	NM_008813	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
h3k4me3_ko_wt_up-339	chr10	115470573	115471191	+	0	NA	intron (NM_010195, intron 7 of 17)	intron (NM_010195, intron 7 of 17)	85923	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding
h3k27me3_ko_wt_down-410	chr12	48362143	48367311	+	0	NA	Intergenic	MURVY-int|LTR|ERV1	-63265	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
h3k27me3_ko_wt_down-15	chr1	61402219	61403587	+	0	NA	Intergenic	Intergenic	24471	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27ac_ko_wt_up-195	chr11	19679021	19680143	+	0	NA	Intergenic	Intergenic	-244860	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
h3k27me3_ko_wt_up-446	chrX	13233467	13234740	+	0	NA	TTS (NR_045430)	TTS (NR_045430)	2180	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA
h3k4me3_ko_wt_up-338	chr10	111247754	111250440	+	0	NA	intron (NM_001003717, intron 3 of 22)	intron (NM_001003717, intron 3 of 22)	-49582	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding
h3k27me3_ko_wt_up-41	chr2	27562751	27564186	+	0	NA	Intergenic	Intergenic	48321	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding
h3k4me3_ko_wt_up-217	chr6	53291734	53293251	+	0	NA	intron (NR_015553, intron 1 of 4)	intron (NR_015553, intron 1 of 4)	5197	NR_015553	320189	Mm.227444	NR_015553		9430076C15Rik	-	RIKEN cDNA 9430076C15 gene	ncRNA
h3k4me3_ko_wt_up-307	chr9	44133950	44135238	+	0	NA	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	-64	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding
h3k4me3_ko_wt_up-549	chr18	69527922	69528769	+	0	NA	intron (NM_001083967, intron 6 of 19)	intron (NM_001083967, intron 6 of 19)	182624	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27ac_ko_wt_up-279	chr19	18011796	18012564	+	0	NA	Intergenic	Ricksha_0|DNA|MULE-MuDR	-174548	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding
h3k27ac_ko_wt_down-198	chr10	17562816	17563943	+	0	NA	Intergenic	Intergenic	-159849	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding
h3k27ac_ko_wt_up-257	chr17	40879083	40880785	+	0	NA	3' UTR (NM_027834, exon 1 of 2)	3' UTR (NM_027834, exon 1 of 2)	624	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding
h3k27ac_ko_wt_down-160	chr7	91044444	91046571	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-45279	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-268	chr14	60501937	60503138	+	0	NA	Intergenic	Intergenic	124251	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
h3k27ac_ko_wt_down-61	chr3	8850470	8852402	+	0	NA	intron (NM_025434, intron 2 of 2)	intron (NM_025434, intron 2 of 2)	72421	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding
h3k27ac_ko_wt_down-290	chr15	23842704	23843458	+	0	NA	Intergenic	Intergenic	806618	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
h3k27ac_ko_wt_up-278	chr19	14240668	14241356	+	0	NA	Intergenic	Intergenic	197494	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
h3k4me3_ko_wt_up-548	chr18	69499548	69502050	+	0	NA	intron (NM_001083967, intron 5 of 19)	intron (NM_001083967, intron 5 of 19)	155078	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k4me3_ko_wt_up-68	chr2	77518821	77519856	+	0	NA	intron (NM_178723, intron 3 of 9)	intron (NM_178723, intron 3 of 9)	328	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
h3k4me3_ko_wt_down-171	chr14	96515646	96519468	+	0	NA	intron (NM_053105, intron 1 of 10)	intron (NM_053105, intron 1 of 10)	1477	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
h3k4me3_ko_wt_up-55	chr2	33580591	33581500	+	0	NA	intron (NM_010725, intron 2 of 7)	MIR|SINE|MIR	59466	NM_010725	16917	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding
h3k27ac_ko_wt_up-51	chr2	108307292	108308597	+	0	NA	Intergenic	Intergenic	970346	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding
h3k4me3_ko_wt_up-275	chr8	13212336	13213003	+	0	NA	Intergenic	Intergenic	-12045	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding
h3k27me3_ko_wt_up-6	chr1	39191283	39191911	+	0	NA	Intergenic	Intergenic	-2675	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding
h3k27me3_ko_wt_up-513	chrX	152343245	152344409	+	0	NA	3' UTR (NM_001313748, exon 3 of 3)	3' UTR (NM_001313748, exon 3 of 3)	-1343	NM_029836	52808	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding
h3k4me3_ko_wt_up-199	chr5	138997316	138998187	+	0	NA	Intergenic	Intergenic	-2798	NM_008808	18590	Mm.2675	NM_008808		Pdgfa	-	platelet derived growth factor, alpha	protein-coding
h3k27me3_ko_wt_down-145	chr4	43661315	43665060	+	0	NA	intron (NM_175517, intron 3 of 6)	B1F1|SINE|Alu	5672	NM_175517	242408	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding
h3k4me3_ko_wt_up-226	chr6	116054085	116057357	+	0	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-60716	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding
h3k27ac_ko_wt_down-134	chr6	43774746	43775749	+	0	NA	Intergenic	Intergenic	-108969	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
h3k4me3_het_wt_up-5	chr2	26501753	26504123	+	0	NA	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	884	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding
h3k4me3_ko_wt_up-553	chr18	69605868	69610631	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	262528	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k4me3_ko_wt_up-144	chr4	47091533	47093011	+	0	NA	exon (NM_172693, exon 1 of 10)	exon (NM_172693, exon 1 of 10)	319	NM_172693	230145	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	protein-coding
h3k27me3_ko_wt_up-63	chr2	87525455	87527303	+	0	NA	Intergenic	Intergenic	-5656	NM_206823	110511	Mm.424751	NM_206823	ENSMUSG00000061520	Olfr153	GA_x6K02T2Q125-49033418-49034341|MOR177-5|Olfr4-2|V5	olfactory receptor 153	protein-coding
h3k4me3_ko_wt_up-198	chr5	135877463	135878194	+	0	NA	Intergenic	Intergenic	-10091	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding
h3k4me3_ko_wt_up-436	chr13	119597638	119598417	+	0	NA	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-25792	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
h3k27me3_ko_wt_down-33	chr1	102329855	102331850	+	0	NA	Intergenic	Intergenic	1175084	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27me3_ko_wt_down-219	chr5	47796494	47798123	+	0	NA	Intergenic	Intergenic	-185847	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-103	chr5	18953410	18954982	+	0	NA	Intergenic	Intergenic	272359	NR_102342	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA
h3k4me3_ko_wt_up-267	chr7	127363094	127364319	+	0	NA	Intergenic	CpG	12344	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding
h3k4me3_ko_wt_down-215	chrX	163760668	163761700	+	0	NA	5' UTR (NM_028842, exon 1 of 1)	5' UTR (NM_028842, exon 1 of 1)	148	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding
h3k27me3_ko_wt_down-324	chr8	59485371	59487059	+	0	NA	Intergenic	LTR33|LTR|ERVL	-339434	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
h3k27me3_ko_wt_down-529	chr15	56863633	56867230	+	0	NA	Intergenic	Intergenic	-170885	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding
h3k4me3_ko_wt_down-153	chr13	21221429	21223688	+	0	NA	Intergenic	Intergenic	42627	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding
h3k4me3_ko_wt_up-457	chr15	25758352	25759204	+	0	NA	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-84520	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
h3k27ac_ko_wt_down-245	chr13	28465407	28466154	+	0	NA	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	245093	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
h3k27me3_ko_wt_down-427	chr12	89952908	89954147	+	0	NA	intron (NM_001252074, intron 1 of 6)	intron (NM_001252074, intron 1 of 6)	141044	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_up-264	chr11	89760468	89765022	+	0	NA	Intergenic	Intergenic	-224190	NM_001080933	382543	Mm.173249	NM_001080933	ENSMUSG00000047773	Ankfn1	Gm1175	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
h3k4me3_ko_wt_up-479	chr16	7038969	7041000	+	0	NA	intron (NM_021477, intron 5 of 16)	intron (NM_021477, intron 5 of 16)	-29851	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
h3k27me3_ko_wt_up-479	chrX	102644620	102646042	+	0	NA	Intergenic	Intergenic	-1085	NM_173021	18679	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding
h3k27me3_ko_wt_down-443	chr13	8787334	8789756	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	82499	NM_172445	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
h3k4me3_ko_wt_up-271	chr8	8649954	8651589	+	0	NA	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10002	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k4me3_ko_wt_up-478	chr16	4938800	4940006	+	0	NA	non-coding (NR_037666, exon 1 of 3)	non-coding (NR_037666, exon 1 of 3)	182	NR_037666	100503704	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA
h3k27me3_ko_wt_down-167	chr4	66385539	66387489	+	0	NA	intron (NM_207109, intron 1 of 22)	MTEb|LTR|ERVL-MaLR	17969	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27me3_ko_wt_up-13	chr1	77948662	77950866	+	0	NA	Intergenic	Intergenic	247372	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
h3k27me3_ko_wt_up-20	chr1	124337421	124338517	+	0	NA	Intergenic	B3A|SINE|B2	-292410	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding
h3k27me3_ko_wt_up-193	chr7	133185094	133187123	+	0	NA	Intergenic	Intergenic	57857	NR_046279	74970	Mm.491044	NR_046279		4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA
h3k27ac_ko_wt_down-277	chr14	93812973	93813560	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	75622	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k27ac_het_wt_up-6	chr2	77913375	77914389	+	0	NA	intron (NM_030560, intron 14 of 20)	intron (NM_030560, intron 14 of 20)	32474	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-376	chr11	98294182	98295909	+	0	NA	Intergenic	Intergenic	32439	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA
h3k4me3_het_wt_up-30	chr13	119600220	119600516	+	0	NA	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23451	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
h3k4me3_ko_wt_up-340	chr10	120551976	120553348	+	0	NA	Intergenic	CpG	-75727	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding
h3k27me3_ko_wt_up-183	chr7	45210409	45212455	+	0	NA	exon (NM_015789, exon 2 of 5)	exon (NM_015789, exon 2 of 5)	451	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding
h3k27me3_ko_wt_up-120	chr4	125126268	125129796	+	0	NA	promoter-TSS (NM_153159)	promoter-TSS (NM_153159)	-151	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|Mcpip1	zinc finger CCCH type containing 12A	protein-coding
h3k4me3_ko_wt_down-159	chr13	40606138	40607369	+	0	NA	Intergenic	Intergenic	-121055	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA
h3k27ac_ko_wt_down-254	chr13	82942537	82943857	+	0	NA	Intergenic	Intergenic	-244864	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
h3k27me3_ko_wt_up-45	chr2	42156174	42158365	+	0	NA	intron (NM_053011, intron 2 of 90)	(CATA)n|Simple_repeat|Simple_repeat	290299	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
h3k4me3_ko_wt_down-204	chr19	8663491	8665904	+	0	NA	intron (NM_007698, intron 1 of 1)	intron (NM_007698, intron 1 of 1)	692	NM_007698	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding
h3k27me3_ko_wt_down-412	chr12	50522787	50524194	+	0	NA	intron (NM_008858, intron 1 of 18)	intron (NM_008858, intron 1 of 18)	125733	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
h3k27me3_ko_wt_up-174	chr6	128596946	128600687	+	0	NA	Intergenic	Intergenic	-17210	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding
h3k27ac_ko_wt_down-109	chr5	45102010	45103615	+	0	NA	intron (NR_131933, intron 5 of 5)	intron (NR_131933, intron 5 of 5)	136611	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
h3k4me3_ko_wt_up-530	chr18	20741022	20742071	+	0	NA	intron (NM_019737, intron 1 of 8)	intron (NM_019737, intron 1 of 8)	4858	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding
h3k27me3_ko_wt_down-416	chr12	56376265	56377948	+	0	NA	Intergenic	Intergenic	-31212	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding
h3k27ac_ko_wt_up-191	chr10	106732058	106732848	+	0	NA	intron (NM_001205341, intron 3 of 31)	intron (NM_001205341, intron 3 of 31)	-129973	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA
h3k27ac_ko_wt_up-236	chr15	16203980	16204351	+	0	NA	Intergenic	Intergenic	-573936	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding
h3k27ac_ko_wt_up-56	chr2	127520865	127522339	+	0	NA	promoter-TSS (NM_019789)	promoter-TSS (NM_019789)	-210	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding
h3k27me3_ko_wt_down-39	chr1	107282100	107286566	+	0	NA	Intergenic	RMER3D-int|LTR|ERVK	-5962	NM_201363	381286	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding
h3k27me3_ko_wt_down-553	chr16	84472817	84476881	+	0	NA	Intergenic	Intergenic	103706	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k4me3_ko_wt_up-186	chr5	107402549	107404875	+	0	NA	exon (NM_001001804, exon 1 of 7)	exon (NM_001001804, exon 1 of 7)	199	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding
h3k4me3_ko_wt_up-325	chr10	57783598	57788703	+	0	NA	intron (NM_021272, intron 2 of 3)	intron (NM_021272, intron 2 of 3)	1227	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding
h3k27me3_ko_wt_down-203	chr4	111869603	111876619	+	0	NA	Intergenic	Intergenic	29685	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k27ac_ko_wt_down-93	chr4	31419481	31420094	+	0	NA	Intergenic	Intergenic	-544320	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27ac_ko_wt_down-106	chr5	21571840	21574832	+	0	NA	intron (NM_028977, intron 3 of 3)	intron (NM_028977, intron 3 of 3)	29809	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
h3k27me3_het_wt_up-11	chr2	102258374	102259844	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-72649	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
h3k27ac_ko_wt_up-216	chr13	94173740	94175121	+	0	NA	exon (NM_172589, exon 3 of 4)	exon (NM_172589, exon 3 of 4)	110851	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding
h3k27me3_ko_wt_down-300	chr8	30507876	30510560	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-59177	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
h3k4me3_het_wt_up-2	chr1	172340656	172343729	+	0	NA	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	982	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding
h3k4me3_ko_wt_up-523	chr17	71310096	71311582	+	0	NA	exon (NM_145158, exon 1 of 8)	exon (NM_145158, exon 1 of 8)	126	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding
h3k27ac_ko_wt_down-3	chr1	10403792	10404688	+	0	NA	intron (NM_177834, intron 8 of 10)	intron (NM_177834, intron 8 of 10)	-171570	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding
h3k4me3_ko_wt_up-510	chr17	35050134	35051874	+	0	NA	intron (NM_033444, intron 1 of 5)	(GGAGA)n|Simple_repeat|Simple_repeat	761	NM_033444	114584	Mm.29524	NM_033444		Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding
h3k4me3_ko_wt_down-156	chr13	24686949	24687514	+	0	NA	intron (NM_001286100, intron 8 of 22)	intron (NM_001286100, intron 8 of 22)	48583	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding
h3k4me3_ko_wt_up-256	chr7	90302041	90303139	+	0	NA	non-coding (NR_110348, exon 1 of 9)	non-coding (NR_110348, exon 1 of 9)	235	NR_110348	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding
h3k4me3_ko_wt_down-71	chr6	59424829	59426903	+	0	NA	intron (NM_183183, intron 1 of 1)	intron (NM_183183, intron 1 of 1)	424	NM_183183	243385	Mm.138080	NM_183183		Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding
h3k27ac_ko_wt_down-20	chr1	77567514	77569064	+	0	NA	Intergenic	Intergenic	-53201	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
h3k27ac_ko_wt_down-83	chr4	10985985	10986563	+	0	NA	Intergenic	Intergenic	21345	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding
h3k27me3_ko_wt_down-36	chr1	102366144	102370327	+	0	NA	Intergenic	Intergenic	1212467	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27me3_ko_wt_up-374	chr16	8409241	8411996	+	0	NA	intron (NM_029070, intron 3 of 3)	RMER15|LTR|ERVL	14518	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding
h3k27me3_ko_wt_up-3	chr1	15624880	15626303	+	0	NA	intron (NM_001098528, intron 1 of 1)	intron (NM_001098528, intron 1 of 1)	-180055	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
h3k4me3_ko_wt_up-405	chr12	111274177	111275423	+	0	NA	exon (NM_033603, exon 6 of 12)	exon (NM_033603, exon 6 of 12)	3704	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding
h3k4me3_ko_wt_down-25	chr2	153290923	153292502	+	0	NA	intron (NM_008444, intron 1 of 8)	MIR3|SINE|MIR	296	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding
h3k4me3_het_wt_up-10	chr2	105680652	105683514	+	0	NA	promoter-TSS (NM_001310146)	promoter-TSS (NM_001310146)	-380	NM_001310146	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding
h3k27ac_ko_wt_down-74	chr3	101162564	101163717	+	0	NA	Intergenic	Intergenic	-52974	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27me3_ko_wt_up-320	chr14	23292327	23298427	+	0	NA	Intergenic	Intergenic	-200806	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
h3k27me3_ko_wt_down-27	chr1	78079753	78084488	+	0	NA	Intergenic	Intergenic	115016	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
h3k27me3_ko_wt_up-383	chr16	30249809	30253127	+	0	NA	Intergenic	Intergenic	16064	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding
h3k27ac_ko_wt_down-152	chr7	55145887	55146874	+	0	NA	intron (NM_178705, intron 5 of 11)	intron (NM_178705, intron 5 of 11)	311135	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
h3k27ac_ko_wt_down-322	chr18	28718706	28720409	+	0	NA	intron (NR_045398, intron 2 of 4)	intron (NR_045398, intron 2 of 4)	159393	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
h3k4me3_ko_wt_down-102	chr8	80493099	80493738	+	0	NA	promoter-TSS (NM_010369)	promoter-TSS (NM_010369)	-627	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding
h3k27me3_ko_wt_down-137	chr3	156023546	156025512	+	0	NA	Intergenic	Intergenic	48175	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
h3k4me3_het_wt_up-23	chr7	28311149	28312448	+	0	NA	intron (NM_025616, intron 1 of 10)	CpG	248	NM_025616	66525	Mm.167913	NM_025616		Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding
h3k4me3_ko_wt_up-52	chr2	30952656	30954232	+	0	NA	intron (NM_133673, intron 1 of 4)	intron (NM_133673, intron 1 of 4)	443	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding
h3k27ac_ko_wt_down-121	chr5	81359656	81360244	+	0	NA	intron (NM_198702, intron 5 of 27)	intron (NM_198702, intron 5 of 27)	338357	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
h3k27me3_het_wt_down-26	chrX	169772165	169775701	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	5702	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k27me3_het_wt_down-22	chrX	104943181	104944135	+	0	NA	Intergenic	Intergenic	-86391	NM_053206	272790	Mm.165776	NM_053206	ENSMUSG00000031224	Magee2	9630059J11Rik|BB131182|Mage-e2	melanoma antigen, family E, 2	protein-coding
h3k27me3_ko_wt_up-213	chr8	115157261	115159016	+	0	NA	intron (NM_019573, intron 8 of 8)	L2b|LINE|L2	548756	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
h3k27me3_ko_wt_up-393	chr16	84773680	84776438	+	0	NA	intron (NM_023844, intron 1 of 9)	intron (NM_023844, intron 1 of 9)	936	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding
h3k4me3_ko_wt_up-466	chr15	86032688	86034813	+	0	NA	promoter-TSS (NM_009886)	promoter-TSS (NM_009886)	27	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	protein-coding
h3k27me3_ko_wt_up-33	chr1	183186564	183187190	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	34652	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-287	chr7	108869153	108870654	+	0	NA	promoter-TSS (NM_001011846)	promoter-TSS (NM_001011846)	-751	NM_001011846	258136	Mm.377356	NM_001011846	ENSMUSG00000066240	Olfr517	MOR268-4	olfactory receptor 517	protein-coding
h3k4me3_ko_wt_up-74	chr2	114411159	114412627	+	0	NA	Intergenic	Intergenic	-210461	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding
h3k4me3_ko_wt_up-369	chr11	86992026	86994276	+	0	NA	intron (NM_001005341, intron 1 of 4)	CpG	611	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_up-227	chr14	16522336	16523003	+	0	NA	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	52807	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
h3k4me3_ko_wt_up-368	chr11	85843998	85844823	+	0	NA	Intergenic	CpG	11795	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding
h3k27me3_ko_wt_down-197	chr4	98690288	98694479	+	0	NA	intron (NM_172696, intron 42 of 43)	intron (NM_172696, intron 42 of 43)	-34371	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding
h3k4me3_ko_wt_up-351	chr11	31169413	31169872	+	0	NA	Intergenic	Intergenic	-183277	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding
h3k27me3_ko_wt_down-586	chr18	6153017	6155410	+	0	NA	Intergenic	Intergenic	-18115	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
h3k4me3_ko_wt_down-180	chr16	75442636	75447844	+	0	NA	Intergenic	Intergenic	140821	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding
h3k4me3_ko_wt_down-53	chr4	145584931	145586055	+	0	NA	Intergenic	Intergenic	-31653	NM_001205101	433801	Mm.276881	NM_001013808		Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding
h3k27me3_ko_wt_up-427	chr19	19108129	19109902	+	0	NA	intron (NM_001043354, intron 1 of 9)	intron (NM_001043354, intron 1 of 9)	2181	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta	RAR-related orphan receptor beta	protein-coding
h3k27ac_ko_wt_up-201	chr12	33106305	33107568	+	0	NA	Intergenic	Intergenic	-14061	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
h3k27me3_het_wt_down-17	chrX	94239384	94242485	+	0	NA	intron (NM_001039061, intron 1 of 2)	Charlie1b|DNA|hAT-Charlie	6004	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27me3_ko_wt_down-582	chr18	4123930	4125427	+	0	NA	Intergenic	Intergenic	-41154	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
h3k27me3_ko_wt_down-5	chr1	19853216	19855287	+	0	NA	Intergenic	Lx7|LINE|L1	-502203	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
h3k27me3_ko_wt_down-141	chr4	7974299	7977937	+	0	NA	Intergenic	Intergenic	262923	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
h3k4me3_ko_wt_up-416	chr13	53285093	53286178	+	0	NA	intron (NM_013846, intron 1 of 8)	CpG	474	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding
h3k27me3_ko_wt_down-118	chr3	126816524	126823761	+	0	NA	intron (NM_001293665, intron 15 of 19)	B3|SINE|B2	123244	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
h3k27me3_ko_wt_down-609	chr18	87905916	87912073	+	0	NA	Intergenic	RMER12B|LTR|ERVK	985213	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
h3k4me3_ko_wt_up-355	chr11	43626521	43627227	+	0	NA	Intergenic	Intergenic	-25312	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding
h3k27ac_ko_wt_up-205	chr13	4608575	4609705	+	0	NA	promoter-TSS (NM_018859)	promoter-TSS (NM_018859)	24	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding
h3k27ac_het_wt_up-3	chr2	77905711	77906312	+	0	NA	intron (NM_030560, intron 17 of 20)	intron (NM_030560, intron 17 of 20)	40345	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-454	chr13	31258799	31261024	+	0	NA	Intergenic	Intergenic	-18825	NR_045957	73924	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA
h3k27me3_ko_wt_down-580	chr18	4094188	4104829	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-66324	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
h3k27ac_ko_wt_up-94	chr4	15385049	15386189	+	0	NA	Intergenic	Intergenic	119799	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
h3k27ac_ko_wt_up-34	chr2	74020368	74021298	+	0	NA	Intergenic	Intergenic	-109507	NM_001301722	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding
h3k4me3_ko_wt_down-13	chr2	19198668	19199861	+	0	NA	5' UTR (NM_001081083, exon 1 of 20)	5' UTR (NM_001081083, exon 1 of 20)	146	NM_001081083	70882	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding
h3k27me3_ko_wt_up-50	chr2	59816207	59817307	+	0	NA	intron (NM_198294, intron 17 of 26)	intron (NM_198294, intron 17 of 26)	65849	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding
h3k27me3_ko_wt_down-357	chr10	104385335	104387224	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	99010	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
h3k27ac_ko_wt_down-232	chr12	68242375	68243303	+	0	NA	Intergenic	Intergenic	-573568	NR_033146	100316870	Mm.379794	NR_033146		Gm17821	-	DDB1 and CUL4 associated factor 5 pseudogene	pseudo
h3k4me3_ko_wt_up-582	chrX	103480448	103484121	+	0	NA	non-coding (NR_002844, exon 4 of 4)	non-coding (NR_002844, exon 4 of 4)	949	NR_001463	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA
h3k27ac_ko_wt_up-53	chr2	115056562	115057667	+	0	NA	Intergenic	Intergenic	287166	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA
h3k27ac_ko_wt_up-266	chr18	7604332	7605968	+	0	NA	intron (NM_001161620, intron 1 of 12)	intron (NM_001161620, intron 1 of 12)	21713	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
h3k27me3_ko_wt_up-225	chr9	105826674	105829589	+	0	NA	promoter-TSS (NM_001102607)	promoter-TSS (NM_001102607)	-46	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding
h3k4me3_ko_wt_up-560	chr19	6829364	6831581	+	0	NA	promoter-TSS (NR_039555)	promoter-TSS (NR_039555)	-528	NR_039555	100628576		NR_039555	ENSMUSG00000104884	Mir5046	mmu-mir-5046|mu-mir-5046	microRNA 5046	ncRNA
h3k27me3_ko_wt_up-271	chr11	111066251	111069388	+	0	NA	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	1655	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27me3_ko_wt_up-253	chr11	62247726	62250401	+	0	NA	promoter-TSS (NM_007413)	promoter-TSS (NM_007413)	79	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding
h3k4me3_ko_wt_up-427	chr13	94173570	94175962	+	0	NA	intron (NM_172589, intron 3 of 3)	intron (NM_172589, intron 3 of 3)	110515	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding
h3k27me3_het_wt_down-20	chrX	94264577	94269012	+	0	NA	intron (NM_001039061, intron 2 of 2)	intron (NM_001039061, intron 2 of 2)	-7780	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27ac_ko_wt_up-187	chr10	69764186	69765726	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-160576	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
h3k27me3_ko_wt_down-544	chr16	81417961	81421235	+	0	NA	intron (NM_010954, intron 1 of 15)	B2_Mm2|SINE|B2	218901	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
h3k27me3_ko_wt_down-349	chr10	19452209	19461172	+	0	NA	Intergenic	Intergenic	100151	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
h3k4me3_ko_wt_up-237	chr6	142570780	142571619	+	0	NA	5' UTR (NM_008428, exon 1 of 3)	5' UTR (NM_008428, exon 1 of 3)	157	NM_008428	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding
h3k4me3_ko_wt_up-401	chr12	107975672	107978359	+	0	NA	intron (NM_001079883, intron 2 of 3)	intron (NM_001079883, intron 2 of 3)	26399	NM_001286343	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding
h3k4me3_ko_wt_up-208	chr5	151233240	151234070	+	0	NA	Intergenic	CpG	-43462	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding
h3k27me3_ko_wt_down-302	chr8	30521785	30523715	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-45645	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
h3k27me3_ko_wt_down-88	chr2	145769370	145772783	+	0	NA	Intergenic	Intergenic	-15040	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding
h3k4me3_ko_wt_up-318	chr9	119982549	119984030	+	0	NA	intron (NM_153287, intron 1 of 4)	CpG	1369	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding
h3k27me3_ko_wt_up-403	chr17	49563279	49564526	+	0	NA	intron (NM_001008231, intron 1 of 25)	intron (NM_001008231, intron 1 of 25)	435	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding
h3k4me3_ko_wt_up-319	chr9	122902761	122903794	+	0	NA	Intergenic	Intergenic	14806	NM_001177505	382118	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding
h3k4me3_ko_wt_up-209	chr6	6005726	6006794	+	0	NA	intron (NM_010063, intron 14 of 16)	CpG	-28867	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA
h3k27me3_ko_wt_down-306	chr8	36143669	36144706	+	0	NA	intron (NM_172911, intron 5 of 5)	intron (NM_172911, intron 5 of 5)	49359	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
h3k27me3_ko_wt_up-161	chr6	63723207	63726756	+	0	NA	intron (NM_008167, intron 2 of 15)	L1_Mur1|LINE|L1	468124	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
h3k27me3_ko_wt_down-613	chr19	15469411	15470342	+	0	NA	Intergenic	Intergenic	454746	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding
h3k27ac_ko_wt_down-51	chr2	101300852	101301951	+	0	NA	Intergenic	Intergenic	-323347	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k27me3_ko_wt_up-428	chr19	23135769	23136750	+	0	NA	Intergenic	CpG	-4967	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding
h3k27me3_ko_wt_down-531	chr16	16205774	16207018	+	0	NA	Intergenic	Intergenic	-6949	NM_026163	67451	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding
h3k27me3_ko_wt_down-240	chr5	95914310	95917296	+	0	NA	Intergenic	Intergenic	-41136	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding
h3k27me3_het_wt_down-14	chrX	94155523	94163186	+	0	NA	Intergenic	L1MB5|LINE|L1	-35947	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k4me3_ko_wt_up-371	chr11	94490962	94491686	+	0	NA	exon (NM_027984, exon 10 of 10)	exon (NM_027984, exon 10 of 10)	-6014	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding
h3k4me3_ko_wt_down-170	chr14	79397457	79398671	+	0	NA	intron (NM_145960, intron 1 of 10)	intron (NM_145960, intron 1 of 10)	292	NM_145960	211253	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding
h3k27ac_ko_wt_up-228	chr14	72240140	72240619	+	0	NA	Intergenic	Intergenic	383670	NR_046274	74667	Mm.159286	NR_046274		4930434J06Rik	-	RIKEN cDNA 4930434J06 gene	ncRNA
h3k4me3_ko_wt_up-367	chr11	82970802	82971586	+	0	NA	Intergenic	Intergenic	-10513	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA
h3k4me3_ko_wt_up-181	chr5	49284761	49285730	+	0	NA	intron (NM_001199244, intron 1 of 7)	intron (NM_001199244, intron 1 of 7)	414	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
h3k27ac_ko_wt_up-231	chr14	93786538	93787306	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	101966	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k27ac_ko_wt_up-196	chr11	20830098	20832208	+	0	NA	promoter-TSS (NM_173752)	promoter-TSS (NM_173752)	-45	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding
h3k27ac_ko_wt_up-229	chr14	79837926	79838192	+	0	NA	Intergenic	Intergenic	31117	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA
h3k4me3_ko_wt_down-54	chr4	145774321	145775139	+	0	NA	Intergenic	Intergenic	-6813	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Gm13139	OTTMUSG00000010657	predicted gene 13139	protein-coding
h3k27me3_ko_wt_up-351	chr15	21772683	21774788	+	0	NA	Intergenic	Intergenic	662283	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
h3k27me3_ko_wt_down-194	chr4	94169650	94172598	+	0	NA	Intergenic	Intergenic	385672	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27ac_ko_wt_down-84	chr4	12243218	12243751	+	0	NA	Intergenic	Intergenic	-71469	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
h3k27me3_ko_wt_down-134	chr3	145882001	145883411	+	0	NA	intron (NM_026993, intron 4 of 5)	intron (NM_026993, intron 4 of 5)	-41556	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding
h3k27me3_ko_wt_down-46	chr1	139416663	139418192	+	0	NA	Intergenic	L1_Rod|LINE|L1	-4956	NM_172643	226470	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41 homolog	protein-coding
h3k27me3_ko_wt_up-373	chr16	7040703	7041520	+	0	NA	intron (NM_021477, intron 5 of 16)	intron (NM_021477, intron 5 of 16)	-28724	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
h3k4me3_ko_wt_down-40	chr3	154816872	154817875	+	0	NA	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	106240	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
h3k27ac_ko_wt_down-45	chr2	58240198	58241766	+	0	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	-35797	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
h3k4me3_ko_wt_up-435	chr13	119487417	119489337	+	0	NA	promoter-TSS (NR_027974)	promoter-TSS (NR_027974)	7	NR_027974	67304	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA
h3k27ac_ko_wt_down-317	chr17	94053654	94054755	+	0	NA	Intergenic	Intergenic	695688	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
h3k27me3_ko_wt_down-284	chr7	94642410	94643590	+	0	NA	Intergenic	Intergenic	-1528244	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
h3k27ac_ko_wt_down-94	chr4	31818908	31820256	+	0	NA	Intergenic	Intergenic	-144525	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27me3_ko_wt_down-400	chr12	39081642	39084044	+	0	NA	Intergenic	Intergenic	299132	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k4me3_ko_wt_down-39	chr3	153943360	153945323	+	0	NA	intron (NM_007382, intron 1 of 11)	CpG	302	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding
h3k27me3_ko_wt_down-12	chr1	61277208	61279085	+	0	NA	Intergenic	Intergenic	-100286	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k4me3_ko_wt_up-225	chr6	112489310	112491359	+	0	NA	promoter-TSS (NM_001081147)	promoter-TSS (NM_001081147)	-526	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding
h3k27me3_ko_wt_up-84	chr2	166366120	166367512	+	0	NA	Intergenic	Intergenic	-80635	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA
h3k4me3_ko_wt_down-91	chr7	113765681	113768491	+	0	NA	intron (NM_145584, intron 1 of 15)	intron (NM_145584, intron 1 of 15)	1088	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding
h3k27me3_ko_wt_up-394	chr16	91156431	91157367	+	0	NA	Intergenic	Intergenic	-68651	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
h3k27me3_ko_wt_up-214	chr9	21166273	21167172	+	0	NA	intron (NM_183408, intron 1 of 14)	intron (NM_183408, intron 1 of 14)	1008	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding
h3k27me3_ko_wt_down-591	chr18	13812269	13815163	+	0	NA	intron (NM_145492, intron 5 of 7)	intron (NM_145492, intron 5 of 7)	159017	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k27ac_ko_wt_down-291	chr15	24566500	24567757	+	0	NA	Intergenic	Intergenic	846636	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
h3k27me3_ko_wt_down-565	chr17	43842352	43845229	+	0	NA	intron (NM_207649, intron 2 of 4)	intron (NM_207649, intron 2 of 4)	39787	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
h3k4me3_ko_wt_down-81	chr7	27232658	27233710	+	0	NA	intron (NM_133770, intron 1 of 14)	intron (NM_133770, intron 1 of 14)	171	NM_133770	76889	Mm.124728	NM_133770	ENSMUSG00000003762	Adck4	0610012P18Rik	aarF domain containing kinase 4	protein-coding
h3k27ac_ko_wt_down-161	chr7	91208154	91210269	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	118425	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-73	chr3	80079709	80081509	+	0	NA	Intergenic	Intergenic	194679	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding
h3k27me3_ko_wt_up-384	chr16	32163532	32165910	+	0	NA	intron (NM_146069, intron 1 of 3)	MIRc|SINE|MIR	755	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding
h3k4me3_ko_wt_up-276	chr8	23058137	23059072	+	0	NA	non-coding (NR_102386, exon 1 of 45)	non-coding (NR_102386, exon 1 of 45)	345	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding
h3k27me3_ko_wt_down-67	chr2	57775791	57778674	+	0	NA	Intergenic	Lx|LINE|L1	-220923	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
h3k4me3_ko_wt_up-240	chr6	147262498	147264094	+	0	NA	exon (NM_008970, exon 2 of 4)	exon (NM_008970, exon 2 of 4)	717	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding
h3k27me3_ko_wt_up-345	chr15	6329534	6331534	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	30745	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k4me3_ko_wt_up-207	chr5	148958980	148959807	+	0	NA	Intergenic	Intergenic	9143	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA
h3k4me3_ko_wt_up-317	chr9	118476779	118478660	+	0	NA	promoter-TSS (NM_001164789)	promoter-TSS (NM_001164789)	-470	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin homolog (Xenopus laevis)	protein-coding
h3k27me3_ko_wt_down-449	chr13	20273256	20275534	+	0	NA	intron (NM_080288, intron 7 of 21)	intron (NM_080288, intron 7 of 21)	183888	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding
h3k27ac_ko_wt_up-69	chr3	7076913	7077424	+	0	NA	Intergenic	Intergenic	-289436	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
h3k27me3_ko_wt_up-254	chr11	63462834	63464835	+	0	NA	Intergenic	Intergenic	-77765	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA
h3k27me3_ko_wt_down-78	chr2	105326574	105329115	+	0	NA	intron (NM_001159638, intron 2 of 2)	intron (NM_001159638, intron 2 of 2)	71475	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
h3k27me3_ko_wt_down-213	chr5	22094208	22096060	+	0	NA	intron (NM_001310464, intron 10 of 63)	AmnSINE1|SINE|Deu	-229530	NM_030727	80979	Mm.160370	NM_030727		Slc26a5	Pres|prestin	solute carrier family 26, member 5	protein-coding
h3k27me3_ko_wt_down-523	chr15	51667687	51674231	+	0	NA	Intergenic	Intergenic	194502	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
h3k4me3_ko_wt_up-428	chr13	97247218	97250240	+	0	NA	intron (NM_007930, intron 2 of 2)	intron (NM_007930, intron 2 of 2)	7624	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding
h3k4me3_ko_wt_up-221	chr6	94400606	94401565	+	0	NA	Intergenic	Intergenic	-99229	NM_026255	67582	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding
h3k4me3_ko_wt_up-239	chr6	146501431	146503049	+	0	NA	promoter-TSS (NM_010586)	promoter-TSS (NM_010586)	-17	NM_019923	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding
h3k27ac_ko_wt_up-189	chr10	86331431	86332257	+	0	NA	intron (NM_011595, intron 1 of 4)	intron (NM_011595, intron 1 of 4)	31432	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding
h3k27me3_ko_wt_down-406	chr12	47368430	47370219	+	0	NA	Intergenic	Lx6|LINE|L1	-550549	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k27me3_ko_wt_down-402	chr12	46365079	46374995	+	0	NA	Intergenic	Intergenic	448738	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k27me3_ko_wt_up-404	chr17	58050043	58051494	+	0	NA	intron (NM_001081653, intron 6 of 23)	L1VL1|LINE|L1	281198	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding
h3k27me3_ko_wt_down-547	chr16	83414450	83416797	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-955520	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k27ac_ko_wt_up-188	chr10	84401399	84402011	+	0	NA	intron (NM_001004363, intron 2 of 6)	intron (NM_001004363, intron 2 of 6)	38766	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding
h3k4me3_ko_wt_up-429	chr13	100669431	100670429	+	0	NA	intron (NM_001168386, intron 1 of 9)	CpG	449	NM_001168386	76041	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding
h3k4me3_ko_wt_up-431	chr13	107246594	107247723	+	0	NA	Intergenic	Intergenic	-222664	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA
h3k4me3_ko_wt_up-238	chr6	144180665	144181659	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	28406	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
h3k27ac_ko_wt_up-235	chr15	10264100	10265601	+	0	NA	intron (NM_001253781, intron 1 of 9)	intron (NM_001253781, intron 1 of 9)	-28801	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
h3k4me3_ko_wt_up-185	chr5	102844935	102847399	+	0	NA	intron (NM_001286468, intron 2 of 7)	intron (NM_001286468, intron 2 of 7)	77357	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding
h3k4me3_ko_wt_up-326	chr10	58674866	58675634	+	0	NA	intron (NM_010100, intron 1 of 11)	intron (NM_010100, intron 1 of 11)	446	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding
h3k4me3_ko_wt_down-212	chrX	139870255	139872026	+	0	NA	exon (NM_029413, exon 2 of 16)	exon (NM_029413, exon 2 of 16)	514	NM_001193309	75746	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding
h3k27me3_ko_wt_down-559	chr16	88875959	88884482	+	0	NA	Intergenic	Intergenic	-2182	NM_130857	77918	Mm.28425	NM_130857	ENSMUSG00000060469	Krtap19-3	A030006N06Rik|Krtap16-5	keratin associated protein 19-3	protein-coding
h3k27me3_ko_wt_up-291	chr13	7520730	7522152	+	0	NA	Intergenic	Intergenic	-681425	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27me3_ko_wt_down-354	chr10	82492459	82494130	+	0	NA	promoter-TSS (NM_001255990)	promoter-TSS (NM_001255990)	-676	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding
h3k27me3_ko_wt_up-311	chr14	13672173	13676689	+	0	NA	intron (NM_177624, intron 2 of 3)	intron (NM_177624, intron 2 of 3)	3555	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
h3k27me3_ko_wt_down-209	chr4	142751123	142752176	+	0	NA	Intergenic	Intergenic	384513	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
h3k4me3_ko_wt_down-14	chr2	26902058	26903669	+	0	NA	promoter-TSS (NM_009298)	promoter-TSS (NM_009298)	-50	NM_009298	20935	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding
h3k27me3_ko_wt_up-46	chr2	42190528	42192665	+	0	NA	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	255972	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
h3k27me3_ko_wt_up-281	chr12	53915451	53917822	+	0	NA	intron (NM_013780, intron 5 of 11)	intron (NM_013780, intron 5 of 11)	287238	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
h3k27me3_ko_wt_up-70	chr2	102548594	102552032	+	0	NA	intron (NM_173749, intron 1 of 10)	intron (NM_173749, intron 1 of 10)	292	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding
h3k27me3_ko_wt_down-246	chr5	106271559	106272079	+	0	NA	Intergenic	Intergenic	186347	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_up-50	chr2	107149228	107150871	+	0	NA	Intergenic	L2b|LINE|L2	-90398	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
h3k4me3_ko_wt_up-375	chr11	97685390	97686227	+	0	NA	promoter-TSS (NM_001085500)	promoter-TSS (NM_001085500)	-144	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding
h3k27me3_ko_wt_up-240	chr10	68721887	68722619	+	0	NA	Intergenic	Intergenic	-1493	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding
h3k27ac_ko_wt_down-216	chr11	37153394	37154383	+	0	NA	Intergenic	Intergenic	-209647	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
h3k27me3_ko_wt_up-109	chr3	140324903	140327399	+	0	NA	Intergenic	Intergenic	297902	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA
h3k27me3_ko_wt_down-457	chr13	67190494	67192880	+	0	NA	Intergenic	Intergenic	-2819	NM_001048204	218311	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding
h3k27me3_ko_wt_down-242	chr5	98261057	98263377	+	0	NA	intron (NM_010203, intron 2 of 2)	intron (NM_010203, intron 2 of 2)	8033	NM_010203	14176	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding
h3k27me3_het_wt_up-3	chr2	77959265	77963833	+	0	NA	Intergenic	Intergenic	-15193	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-242	chr13	16283373	16283965	+	0	NA	Intergenic	Intergenic	269194	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
h3k4me3_het_wt_down-16	chr17	6960375	6961136	+	0	NA	exon (NM_147155, exon 2 of 4)	exon (NM_147155, exon 2 of 4)	401	NM_147155	380608	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding
h3k4me3_ko_wt_down-197	chr18	54952368	54953512	+	0	NA	intron (NM_175751, intron 2 of 9)	intron (NM_175751, intron 2 of 9)	37240	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
h3k27me3_ko_wt_up-239	chr10	68135501	68137111	+	0	NA	intron (NM_023598, intron 4 of 9)	intron (NM_023598, intron 4 of 9)	142420	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding
h3k27ac_ko_wt_down-11	chr1	32092812	32093454	+	0	NA	Intergenic	Intergenic	-79673	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
h3k27me3_ko_wt_down-578	chr18	4071673	4074789	+	0	NA	Intergenic	Lx|LINE|L1	-92601	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
h3k27ac_ko_wt_down-219	chr11	101726747	101727153	+	0	NA	Intergenic	Intergenic	-6006	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
h3k4me3_ko_wt_down-114	chr9	57466607	57468725	+	0	NA	intron (NM_001301635, intron 1 of 5)	intron (NM_001301635, intron 1 of 5)	394	NM_001301635	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding
h3k4me3_ko_wt_up-465	chr15	82986468	82988550	+	0	NA	Intergenic	CpG	-28213	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA
h3k27me3_ko_wt_up-309	chr13	97072176	97073770	+	0	NA	intron (NM_001100458, intron 1 of 12)	intron (NM_001100458, intron 1 of 12)	1330	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding
h3k27me3_ko_wt_up-514	chrX	152379251	152380940	+	0	NA	intron (NR_045451, intron 2 of 3)	Lx7|LINE|L1	11067	NR_045452	75693	Mm.287381	NR_045451	ENSMUSG00000084885	3010001F23Rik	-	RIKEN cDNA 3010001F23 gene	ncRNA
h3k4me3_ko_wt_up-197	chr5	134746832	134747861	+	0	NA	promoter-TSS (NM_007925)	promoter-TSS (NM_007925)	-23	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding
h3k27ac_ko_wt_up-243	chr15	71219042	71219980	+	0	NA	Intergenic	Intergenic	508327	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
h3k4me3_het_wt_up-7	chr2	77945035	77946828	+	0	NA	intron (NM_030560, intron 1 of 20)	CpG	425	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_het_wt_down-19	chr18	30267044	30269441	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-4654	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
h3k4me3_ko_wt_up-573	chrX	8095890	8097314	+	0	NA	promoter-TSS (NR_003632)	promoter-TSS (NR_003632)	-485	NR_003632	627782	Mm.305432	NM_001037930	ENSMUSG00000086404	Gm6787	EG627782	proteasome (prosome, macropain) subunit, beta type 7 pseudogene	pseudo
h3k4me3_ko_wt_up-84	chr2	133437538	133437998	+	0	NA	Intergenic	Intergenic	-114391	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding
h3k27ac_ko_wt_up-142	chr7	74303449	74304289	+	0	NA	intron (NM_001038643, intron 7 of 10)	intron (NM_001038643, intron 7 of 10)	250911	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding
h3k4me3_ko_wt_up-406	chr12	111429139	111429986	+	0	NA	intron (NM_028807, intron 12 of 12)	intron (NM_028807, intron 12 of 12)	12117	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding
h3k27me3_ko_wt_up-111	chr3	150645307	150647532	+	0	NA	Intergenic	Intergenic	-791463	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
h3k4me3_ko_wt_up-255	chr7	83201762	83202282	+	0	NA	Intergenic	Intergenic	-230631	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
h3k27ac_ko_wt_down-144	chr6	128661518	128662151	+	0	NA	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	-551	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding
h3k27ac_ko_wt_up-215	chr13	90851223	90851634	+	0	NA	Intergenic	Intergenic	53927	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding
h3k4me3_ko_wt_down-181	chr16	87128186	87129220	+	0	NA	Intergenic	Intergenic	-225482	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding
h3k27ac_ko_wt_up-24	chr1	126198734	126199291	+	0	NA	intron (NM_176957, intron 7 of 12)	intron (NM_176957, intron 7 of 12)	-286084	NM_001311089	72585	Mm.490405	NM_145100		Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding
h3k4me3_ko_wt_up-57	chr2	44556645	44558065	+	0	NA	Intergenic	Intergenic	304267	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
h3k4me3_ko_wt_up-411	chr13	31557687	31559900	+	0	NA	5' UTR (NM_008239, exon 1 of 1)	5' UTR (NM_008239, exon 1 of 1)	623	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding
h3k4me3_ko_wt_up-218	chr6	55116993	55118248	+	0	NA	intron (NM_001288618, intron 2 of 12)	CpG-12106	293	NM_001288619	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding
h3k4me3_ko_wt_up-308	chr9	57500888	57502099	+	0	NA	Intergenic	Arthur1A|DNA|hAT-Tip100	-2609	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding
h3k27ac_ko_wt_up-258	chr17	49004673	49005192	+	0	NA	intron (NM_027452, intron 1 of 2)	intron (NM_027452, intron 1 of 2)	72350	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding
h3k4me3_ko_wt_up-309	chr9	67830524	67831861	+	0	NA	exon (NM_001163143, exon 2 of 2)	exon (NM_001163143, exon 2 of 2)	1138	NM_001163143	244911	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding
h3k27me3_ko_wt_up-442	chrX	12124063	12126602	+	0	NA	intron (NM_001168321, intron 1 of 13)	(TG)n|Simple_repeat|Simple_repeat	35014	NR_045434	72937	Mm.440386	NR_045434		2900008C10Rik	-	RIKEN cDNA 2900008C10 gene	ncRNA
h3k4me3_ko_wt_down-63	chr5	120502254	120503630	+	0	NA	intron (NM_023625, intron 1 of 11)	intron (NM_023625, intron 1 of 11)	681	NM_023625	71772	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding
h3k4me3_ko_wt_up-219	chr6	56360220	56362645	+	0	NA	intron (NM_001159957, intron 1 of 16)	intron (NM_001159957, intron 1 of 16)	960	NM_001025568	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding
h3k27ac_ko_wt_up-277	chr19	12004731	12006779	+	0	NA	Intergenic	Intergenic	30985	NM_146680	258675	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding
h3k4me3_ko_wt_up-547	chr18	67343399	67344758	+	0	NA	promoter-TSS (NR_033214)	promoter-TSS (NR_033214)	25	NR_033214	338360	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA
h3k27me3_ko_wt_down-310	chr8	38579642	38589297	+	0	NA	intron (NM_145841, intron 1 of 7)	MLTR31FA_MM|LTR|ERVK	77039	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k27ac_ko_wt_up-259	chr17	50149986	50150978	+	0	NA	intron (NM_181397, intron 2 of 9)	intron (NM_181397, intron 2 of 9)	40015	NM_181397	76438	Mm.41854	NM_181397		Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding
h3k4me3_het_wt_down-13	chr17	6489770	6490410	+	0	NA	Intergenic	Intergenic	-39096	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo
h3k27ac_ko_wt_down-228	chr12	60148782	60149656	+	0	NA	Intergenic	Intergenic	-929736	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
h3k27ac_ko_wt_down-120	chr5	80658726	80659630	+	0	NA	Intergenic	Intergenic	-362415	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
h3k27ac_ko_wt_down-155	chr7	77910385	77910797	+	0	NA	Intergenic	L1MC5|LINE|L1	667247	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
h3k4me3_ko_wt_up-337	chr10	94311853	94312782	+	0	NA	Intergenic	CpG	-13614	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA
h3k4me3_ko_wt_down-105	chr8	88360780	88362523	+	0	NA	exon (NM_012047, exon 2 of 17)	exon (NM_012047, exon 2 of 17)	540	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding
h3k27ac_ko_wt_down-325	chr18	33794546	33795636	+	0	NA	non-coding (NR_038152, exon 1 of 2)	non-coding (NR_038152, exon 1 of 2)	199	NR_038152	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA
h3k27ac_ko_wt_down-213	chr11	12741571	12742682	+	0	NA	Intergenic	Intergenic	-277166	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
h3k27ac_ko_wt_up-261	chr17	67697314	67697883	+	0	NA	intron (NM_008480, intron 1 of 62)	CpG	333	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding
h3k27me3_ko_wt_down-595	chr18	13869897	13873155	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	101207	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k27me3_ko_wt_up-145	chr6	16089800	16091011	+	0	NA	Intergenic	Intergenic	369744	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27me3_ko_wt_down-561	chr17	21483279	21484941	+	0	NA	Intergenic	Lx9|LINE|L1	-4878	NM_013843	24132	Mm.42140	NM_013843		Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding
h3k27ac_ko_wt_up-265	chr18	7588689	7591244	+	0	NA	intron (NM_001161620, intron 1 of 12)	intron (NM_001161620, intron 1 of 12)	36897	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding
h3k27me3_ko_wt_up-184	chr7	49692647	49694154	+	0	NA	Intergenic	Intergenic	-56565	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
h3k4me3_ko_wt_up-443	chr14	55478466	55479391	+	0	NA	exon (NM_030686, exon 1 of 5)	exon (NM_030686, exon 1 of 5)	170	NM_001037938	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding
h3k27me3_ko_wt_up-194	chr7	137276081	137277368	+	0	NA	intron (NM_001113414, intron 6 of 15)	intron (NM_001113414, intron 6 of 15)	37721	NM_010096	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding
h3k27me3_ko_wt_down-603	chr18	39429881	39432453	+	0	NA	intron (NM_008173, intron 1 of 7)	intron (NM_008173, intron 1 of 7)	56078	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding
h3k27me3_ko_wt_down-316	chr8	49996064	49999506	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-370327	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
h3k27ac_ko_wt_up-206	chr13	26497394	26498807	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-185694	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
h3k27ac_ko_wt_down-287	chr15	18927995	18929216	+	0	NA	intron (NM_009865, intron 2 of 11)	intron (NM_009865, intron 2 of 11)	108276	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
h3k27me3_ko_wt_down-49	chr1	144437917	144439668	+	0	NA	Intergenic	Intergenic	128875	NM_001290269	624910	Mm.389199	NM_001290269		Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding
h3k4me3_ko_wt_up-500	chr17	9763911	9765379	+	0	NA	intron (NR_045433, intron 3 of 3)	intron (NR_045433, intron 3 of 3)	11221	NR_045433	71092	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA
h3k4me3_ko_wt_up-356	chr11	50371382	50372205	+	0	NA	Intergenic	ID4|SINE|ID	-5926	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding
h3k4me3_ko_wt_up-44	chr2	17932722	17933159	+	0	NA	Intergenic	Intergenic	64018	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding
h3k4me3_ko_wt_up-415	chr13	46571064	46572196	+	0	NA	intron (NM_026056, intron 4 of 12)	intron (NM_026056, intron 4 of 12)	69727	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
h3k27me3_ko_wt_down-312	chr8	38647349	38649692	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	12988	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k27me3_ko_wt_up-173	chr6	118065179	118067171	+	0	NA	promoter-TSS (NM_027526)	promoter-TSS (NM_027526)	-210	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding
h3k4me3_ko_wt_up-458	chr15	27923357	27924478	+	0	NA	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	101931	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding
h3k4me3_ko_wt_up-251	chr7	60096659	60097592	+	0	NA	intron (NM_001082961, intron 1 of 10)	intron (NM_001082961, intron 1 of 10)	483	NM_001082961	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding
h3k27me3_ko_wt_up-92	chr2	171633116	171635063	+	0	NA	Intergenic	Intergenic	328710	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA
h3k27me3_ko_wt_up-151	chr6	34597951	34599747	+	0	NA	Intergenic	Intergenic	-110595	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding
h3k27me3_ko_wt_down-424	chr12	89796315	89798857	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-14897	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27ac_ko_wt_up-211	chr13	82510722	82511389	+	0	NA	Intergenic	Intergenic	187278	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
h3k27me3_ko_wt_down-619	chrX	36242818	36243749	+	0	NA	Intergenic	Tigger19a|DNA|TcMar-Tigger	47379	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding
h3k27me3_ko_wt_up-489	chrX	103692756	103694084	+	0	NA	Intergenic	Intergenic	62834	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding
h3k27me3_ko_wt_down-108	chr3	126668464	126670924	+	0	NA	intron (NM_001293665, intron 2 of 19)	intron (NM_001293665, intron 2 of 19)	72743	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_down-164	chr4	66363747	66365378	+	0	NA	intron (NM_207109, intron 1 of 22)	B3|SINE|B2	39921	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k4me3_ko_wt_up-459	chr15	28021481	28022357	+	0	NA	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	3929	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding
h3k27me3_ko_wt_down-43	chr1	127525694	127530378	+	0	NA	intron (NM_028135, intron 4 of 7)	MT2A|LTR|ERVL	149985	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding
h3k4me3_ko_wt_up-477	chr16	4415172	4417481	+	0	NA	intron (NM_001291910, intron 3 of 11)	intron (NM_001291910, intron 3 of 11)	4172	NM_009624	11515	Mm.439750	NM_009624		Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding
h3k27me3_ko_wt_up-499	chrX	105233043	105235052	+	0	NA	Intergenic	Intergenic	-68542	NR_002167	279610	Mm.418157	NR_002167		E530001F21Rik	-	RIKEN cDNA E530001F21 gene	pseudo
h3k4me3_ko_wt_up-269	chr7	134670509	134671752	+	0	NA	intron (NM_001033420, intron 1 of 51)	CpG	443	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding
h3k27me3_ko_wt_down-343	chr10	9657722	9659156	+	0	NA	intron (NM_177271, intron 1 of 1)	intron (NM_177271, intron 1 of 1)	16769	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding
h3k27me3_ko_wt_up-431	chr19	25343622	25344764	+	0	NA	intron (NM_181404, intron 3 of 13)	intron (NM_181404, intron 3 of 13)	106991	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding
h3k4me3_ko_wt_up-268	chr7	130935588	130937750	+	0	NA	exon (NM_019564, exon 1 of 9)	exon (NM_019564, exon 1 of 9)	466	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding
h3k4me3_ko_wt_up-461	chr15	40114616	40115564	+	0	NA	Intergenic	Intergenic	-19275	NM_001256056	328531	Mm.60703	NM_001256056		9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding
h3k27ac_ko_wt_down-235	chr12	93165977	93166787	+	0	NA	Intergenic	Intergenic	278441	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
h3k27me3_ko_wt_down-327	chr8	62744565	62747125	+	0	NA	Intergenic	(CAGAA)n|Simple_repeat|Simple_repeat	-205387	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding
h3k27me3_ko_wt_up-263	chr11	89756533	89758675	+	0	NA	Intergenic	Intergenic	-219049	NM_001080933	382543	Mm.173249	NM_001080933	ENSMUSG00000047773	Ankfn1	Gm1175	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding
h3k27me3_ko_wt_down-535	chr16	57427153	57428986	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	74792	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
h3k4me3_ko_wt_up-414	chr13	42301196	42302301	+	0	NA	5' UTR (NM_010104, exon 1 of 5)	5' UTR (NM_010104, exon 1 of 5)	478	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|preproET	endothelin 1	protein-coding
h3k27me3_ko_wt_down-135	chr3	153069238	153073204	+	0	NA	Intergenic	Intergenic	80887	NR_108044	75001		NR_108044		4930482G09Rik	-	RIKEN cDNA 4930482G09 gene	ncRNA
h3k27ac_ko_wt_down-133	chr6	42182153	42183352	+	0	NA	Intergenic	Intergenic	-32576	NM_001001453	387515	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding
h3k27me3_ko_wt_up-412	chr18	38207002	38211353	+	0	NA	intron (NM_029357, intron 1 of 2)	intron (NM_029357, intron 1 of 2)	585	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding
h3k27me3_ko_wt_down-279	chr7	69322705	69324596	+	0	NA	Intergenic	Intergenic	-172444	NR_045940	73796	Mm.410832	NR_045940		4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA
h3k27me3_ko_wt_down-285	chr7	94644226	94649330	+	0	NA	Intergenic	Intergenic	-1524466	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding
h3k27me3_ko_wt_up-435	chrX	11999805	12001550	+	0	NA	Intergenic	Intergenic	79876	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_down-258	chr6	71538285	71541851	+	0	NA	Intergenic	Intergenic	-3786	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding
h3k4me3_ko_wt_down-190	chr17	27511968	27513822	+	0	NA	Intergenic	CpG	-9362	NM_001291045	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding
h3k4me3_ko_wt_up-472	chr15	102051754	102052542	+	0	NA	Intergenic	Intergenic	-21625	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding
h3k27me3_ko_wt_down-508	chr14	106051629	106053776	+	0	NA	Intergenic	Intergenic	-53496	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding
h3k27me3_ko_wt_down-564	chr17	43830871	43838069	+	0	NA	intron (NM_001286653, intron 1 of 4)	ORR1A2|LTR|ERVL-MaLR	30467	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
h3k27ac_ko_wt_up-100	chr4	24429068	24431010	+	0	NA	Intergenic	Intergenic	-66423	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k4me3_ko_wt_down	chr1	13659830	13660969	+	0	NA	exon (NM_145381, exon 1 of 7)	exon (NM_145381, exon 1 of 7)	110	NM_145381	212442	Mm.89572	NM_145381		Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding
h3k27me3_ko_wt_down-369	chr10	116018454	116022616	+	0	NA	intron (NM_011217, intron 1 of 13)	intron (NM_011217, intron 1 of 13)	2172	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
h3k4me3_ko_wt_down-168	chr14	57397947	57399224	+	0	NA	promoter-TSS (NM_030004)	promoter-TSS (NM_030004)	-102	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding
h3k27me3_ko_wt_up-155	chr6	36688780	36689652	+	0	NA	Intergenic	Intergenic	122145	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
h3k27me3_ko_wt_up-97	chr3	42564910	42566442	+	0	NA	Intergenic	Intergenic	823058	NM_028667	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
h3k27ac_ko_wt_up-264	chr17	83128872	83129963	+	0	NA	Intergenic	Intergenic	-51192	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA
h3k4me3_ko_wt_up-78	chr2	118896227	118897655	+	0	NA	Intergenic	Intergenic	-4674	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding
h3k27me3_ko_wt_up-123	chr4	148414210	148416892	+	0	NA	Intergenic	Intergenic	29200	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding
h3k27me3_ko_wt_up-180	chr6	148627899	148629989	+	0	NA	Intergenic	Intergenic	-14635	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
h3k27ac_ko_wt_down-271	chr14	80845776	80847117	+	0	NA	Intergenic	Intergenic	846144	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
h3k27me3_ko_wt_up-190	chr7	111308718	111310119	+	0	NA	Intergenic	Lx7|LINE|L1	-186743	NR_015573	75479	Mm.381620	NR_015573		1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA
h3k27me3_het_wt_down-15	chrX	94228302	94234177	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-3691	NM_153165	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27me3_ko_wt_down-472	chr13	119633491	119639904	+	0	NA	intron (NM_020279, intron 1 of 2)	MTA_Mm|LTR|ERVL-MaLR	12878	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
h3k27me3_ko_wt_down-421	chr12	89698967	89709733	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-108133	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k4me3_ko_wt_down-37	chr3	141463783	141469700	+	0	NA	intron (NM_001293561, intron 1 of 16)	intron (NM_001293561, intron 1 of 16)	1177	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 homolog C (C. elegans)	protein-coding
h3k27me3_ko_wt_down-161	chr4	64599538	64614353	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-517229	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
h3k27me3_ko_wt_up-141	chr5	143372122	143375087	+	0	NA	intron (NM_001159321, intron 4 of 21)	intron (NM_001159321, intron 4 of 21)	9696	NM_133355	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding
h3k27ac_ko_wt_down-139	chr6	54008339	54009344	+	0	NA	intron (NR_110484, intron 2 of 3)	intron (NR_110484, intron 2 of 3)	30150	NR_110484	320178	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	-	RIKEN cDNA 4921529L05 gene	ncRNA
h3k27me3_ko_wt_down-195	chr4	94339709	94342895	+	0	NA	Intergenic	Intergenic	215494	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27me3_ko_wt_down-476	chr14	47111039	47113242	+	0	NA	intron (NR_126579, intron 3 of 3)	B3A|SINE|B2	4021	NR_126579	100038654		NR_126579	ENSMUSG00000072589	Gm10371	ENSMUSG00000072589	predicted gene 10371	ncRNA
h3k27ac_ko_wt_up-49	chr2	105913663	105914568	+	0	NA	intron (NM_028260, intron 2 of 6)	intron (NM_028260, intron 2 of 6)	9477	NM_028260	66541	Mm.272253	NM_028260	ENSMUSG00000042670	Immp1l	1500034J20Rik|2610528O17Rik|AU042386	IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-355	chr10	92906473	92908827	+	0	NA	Intergenic	Intergenic	-185232	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
h3k27ac_ko_wt_down-115	chr5	62672394	62673474	+	0	NA	intron (NM_178407, intron 15 of 32)	intron (NM_178407, intron 15 of 32)	93243	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
h3k4me3_ko_wt_up-332	chr10	79532868	79534027	+	0	NA	intron (NM_001302389, intron 1 of 5)	CpG	340	NM_001302442	50784	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding
h3k4me3_ko_wt_up-254	chr7	82335421	82336928	+	0	NA	intron (NM_001190374, intron 1 of 29)	CpG	480	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding
h3k4me3_ko_wt_down-203	chr19	4877987	4879352	+	0	NA	promoter-TSS (NM_027476)	promoter-TSS (NM_027476)	1	NM_001168516	70605	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding
h3k4me3_het_wt_up-42	chr18	69354725	69356365	+	0	NA	intron (NM_001083967, intron 3 of 19)	intron (NM_001083967, intron 3 of 19)	9824	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27ac_ko_wt_down-253	chr13	82372390	82373448	+	0	NA	Intergenic	Intergenic	325414	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
h3k27me3_ko_wt_down-470	chr13	116512770	116513789	+	0	NA	Intergenic	Intergenic	-203591	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
h3k27ac_ko_wt_down-310	chr17	45063592	45064576	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-183199	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
h3k27ac_ko_wt_up-214	chr13	90011213	90012095	+	0	NA	intron (NM_028012, intron 3 of 7)	intron (NM_028012, intron 3 of 7)	77954	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding
h3k27ac_ko_wt_up-173	chr10	22701035	22702634	+	0	NA	intron (NM_178934, intron 4 of 4)	intron (NM_178934, intron 4 of 4)	27598	NR_106123	102465768		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA
h3k27ac_ko_wt_up-38	chr2	77911948	77912665	+	0	NA	intron (NM_030560, intron 14 of 20)	Lx2|LINE|L1	34050	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_up-98	chr4	20756095	20756903	+	0	NA	intron (NM_172987, intron 1 of 4)	intron (NM_172987, intron 1 of 4)	22169	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding
h3k27me3_ko_wt_down-60	chr2	48631535	48634456	+	0	NA	Intergenic	Intergenic	-181114	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
h3k27me3_ko_wt_down-98	chr3	34312967	34316683	+	0	NA	Intergenic	Intergenic	-233471	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ (Hsp40) homolog, subfamily C, member 19	protein-coding
h3k27me3_ko_wt_down-493	chr14	97083187	97088678	+	0	NA	Intergenic	Intergenic	-566898	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding
h3k4me3_ko_wt_up-542	chr18	54125641	54126359	+	0	NA	Intergenic	Intergenic	263887	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
h3k27ac_ko_wt_up-272	chr18	25923331	25924648	+	0	NA	Intergenic	Intergenic	-170006	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k4me3_ko_wt_up-464	chr15	55306559	55308661	+	0	NA	promoter-TSS (NM_181277)	promoter-TSS (NM_181277)	-140	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding
h3k4me3_ko_wt_down-145	chr12	4768252	4769781	+	0	NA	promoter-TSS (NM_028376)	promoter-TSS (NM_028376)	251	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding
h3k27ac_ko_wt_up-17	chr1	80929234	80929920	+	0	NA	Intergenic	Intergenic	-147740	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding
h3k27me3_ko_wt_down-388	chr11	39745554	39750138	+	0	NA	Intergenic	Intergenic	-357621	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
h3k27me3_ko_wt_up-237	chr10	68053616	68057472	+	0	NA	Intergenic	L1M5|LINE|L1	75946	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
h3k27me3_ko_wt_up-115	chr4	6892894	6894631	+	0	NA	intron (NM_145711, intron 1 of 8)	B4|SINE|B4	96961	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
h3k27me3_ko_wt_up-510	chrX	152209733	152211250	+	0	NA	intron (NM_001005475, intron 5 of 13)	MIR|SINE|MIR	-22736	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding
h3k27me3_ko_wt_up-202	chr8	68555730	68557616	+	0	NA	intron (NM_001252623, intron 4 of 10)	intron (NM_001252623, intron 4 of 10)	178473	NM_001252623	234356	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding
h3k4me3_ko_wt_down-177	chr15	101245935	101247071	+	0	NA	Intergenic	CpG	-20343	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding
h3k27me3_ko_wt_up-132	chr5	52217893	52218530	+	0	NA	Intergenic	Intergenic	-1778	NR_040717	414111	Mm.417638	NR_040717	ENSMUSG00000106464	C130083M11Rik	-	RIKEN cDNA C130083M11 gene	ncRNA
h3k27me3_ko_wt_up-107	chr3	101105250	101105667	+	0	NA	intron (NM_011197, intron 1 of 8)	intron (NM_011197, intron 1 of 8)	4708	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27ac_ko_wt_up-89	chr3	142530044	142530853	+	0	NA	intron (NM_001083312, intron 1 of 10)	intron (NM_001083312, intron 1 of 10)	112	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding
h3k27me3_ko_wt_down-433	chr12	106369425	106382649	+	0	NA	Intergenic	Intergenic	71629	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
h3k27ac_ko_wt_up-147	chr8	9411126	9411872	+	0	NA	intron (NM_173446, intron 1 of 2)	intron (NM_173446, intron 1 of 2)	266830	NR_073360	74688	Mm.159298	NR_073360		4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA
h3k4me3_ko_wt_up-293	chr8	109337961	109338670	+	0	NA	Intergenic	Intergenic	2593	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
h3k27me3_ko_wt_up-452	chrX	49986996	49988095	+	0	NA	Intergenic	RSINE1|SINE|B4	22690	NM_146390	258385	Mm.377470	NM_146390	ENSMUSG00000050504	Olfr1323	MOR216-1	olfactory receptor 1323	protein-coding
h3k4me3_ko_wt_up-5	chr1	41122036	41122786	+	0	NA	Intergenic	Intergenic	58841	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
h3k27me3_ko_wt_down-34	chr1	102333424	102338155	+	0	NA	Intergenic	Intergenic	1180021	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k4me3_ko_wt_up-192	chr5	118169360	118170481	+	0	NA	exon (NM_007545, exon 1 of 2)	exon (NM_007545, exon 1 of 2)	156	NM_007545	12123	Mm.384468	NM_007545	ENSMUSG00000046607	Hrk	AI838259|Bid3|DP5|harakiri	harakiri, BCL2 interacting protein (contains only BH3 domain)	protein-coding
h3k4me3_ko_wt_down-154	chr13	21505635	21506969	+	0	NA	intron (NR_026798, intron 1 of 1)	intron (NR_026798, intron 1 of 1)	222	NR_026798	100038371	Mm.133328	NR_026798		Zfp389	ENSMUSG00000075041|OTTMUSG00000018077	zinc finger protein 389	pseudo
h3k4me3_ko_wt_up-29	chr1	161195404	161196537	+	0	NA	Intergenic	Intergenic	-36656	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding
h3k27ac_ko_wt_down-259	chr13	96423247	96424021	+	0	NA	intron (NM_001042714, intron 11 of 13)	intron (NM_001042714, intron 11 of 13)	35340	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein homolog (Chlamydomonas)	protein-coding
h3k4me3_ko_wt_down-209	chrX	114473721	114475509	+	0	NA	exon (NM_172781, exon 1 of 11)	exon (NM_172781, exon 1 of 11)	282	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding
h3k27ac_ko_wt_down-104	chr5	19545858	19546893	+	0	NA	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	319329	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
h3k4me3_ko_wt_down-10	chr1	171246237	171247799	+	0	NA	exon (NM_153064, exon 1 of 13)	exon (NM_153064, exon 1 of 13)	104	NM_153064	226646	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding
h3k27ac_ko_wt_down-32	chr1	172752164	172752932	+	0	NA	Intergenic	Intergenic	54492	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
h3k27ac_ko_wt_down-15	chr1	51332901	51334890	+	0	NA	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-116	NR_045151	442821	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA
h3k27me3_ko_wt_down-178	chr4	84275718	84280565	+	0	NA	intron (NM_172870, intron 5 of 5)	intron (NM_172870, intron 5 of 5)	-233262	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
h3k4me3_ko_wt_down-206	chr19	47536507	47537736	+	0	NA	promoter-TSS (NM_175360)	promoter-TSS (NM_175360)	-101	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding
h3k27ac_ko_wt_down-256	chr13	83374521	83375119	+	0	NA	Intergenic	Intergenic	-129214	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
h3k27me3_ko_wt_up-81	chr2	162915529	162916713	+	0	NA	Intergenic	Intergenic	-15387	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding
h3k27me3_ko_wt_up-244	chr10	79987176	79990643	+	0	NA	intron (NM_007725, intron 1 of 6)	intron (NM_007725, intron 1 of 6)	309	NM_007725	12798	Mm.157770	NM_007725		Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding
h3k4me3_ko_wt_up-589	chrX	169827693	169829791	+	0	NA	intron (NM_001290504, intron 1 of 9)	intron (NM_001290504, intron 1 of 9)	583	NM_001290504	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding
h3k27me3_ko_wt_up-285	chr12	95525366	95527115	+	0	NA	Intergenic	Intergenic	-165986	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
h3k27me3_ko_wt_up-332	chr14	123140702	123142178	+	0	NA	Intergenic	Intergenic	-27063	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k4me3_ko_wt_up-588	chrX	143482908	143483215	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	-35530	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
h3k27me3_ko_wt_up-307	chr13	72480375	72481546	+	0	NA	Intergenic	Intergenic	147604	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA
h3k27me3_ko_wt_down-159	chr4	62590608	62592371	+	0	NA	intron (NM_019492, intron 3 of 19)	MLT1F1|LTR|ERVL-MaLR	-28183	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
h3k27ac_ko_wt_down-202	chr10	41209100	41209393	+	0	NA	intron (NM_133999, intron 22 of 22)	intron (NM_133999, intron 22 of 22)	93995	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-315	chr14	22347169	22348405	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	195011	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA
h3k4me3_ko_wt_up-490	chr16	45096410	45099154	+	0	NA	intron (NM_026439, intron 2 of 7)	intron (NM_026439, intron 2 of 7)	3729	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding
h3k27me3_ko_wt_up-295	chr13	41777478	41781781	+	0	NA	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	67859	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding
h3k27me3_ko_wt_down-147	chr4	49478652	49481414	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	26525	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding
h3k4me3_ko_wt_up-64	chr2	73274972	73277349	+	0	NA	TTS (NM_001005343)	TTS (NM_001005343)	4234	NM_001005343	381373	Mm.330293	NM_001005343		Sp9	-	trans-acting transcription factor 9	protein-coding
h3k27me3_ko_wt_down-463	chr13	112143416	112147139	+	0	NA	Intergenic	Intergenic	-143174	NM_001168405	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
h3k4me3_ko_wt_up-103	chr2	177758964	177759881	+	0	NA	intron (NM_001243903, intron 1 of 4)	RMER17B|LTR|ERVK	134	NM_001243903	626802	Mm.386029	NM_001243903		Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding
h3k4me3_ko_wt_up-374	chr11	97126849	97127692	+	0	NA	Intergenic	Intergenic	-11939	NM_019507	57765	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding
h3k27me3_ko_wt_up-250	chr11	16258163	16261312	+	0	NA	intron (NM_001290539, intron 1 of 4)	intron (NM_001290539, intron 1 of 4)	2013	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
h3k27me3_ko_wt_down-123	chr3	144174770	144186984	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	21455	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
h3k4me3_ko_wt_up-10	chr1	55888715	55891372	+	0	NA	Intergenic	Intergenic	-41198	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
h3k27me3_ko_wt_down-351	chr10	30406658	30410113	+	0	NA	Intergenic	Intergenic	192364	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding
h3k27ac_ko_wt_down-188	chr9	87431343	87433085	+	0	NA	Intergenic	Intergenic	-176682	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding
h3k27ac_ko_wt_down-280	chr14	105254375	105254626	+	0	NA	Intergenic	Intergenic	-4173	NM_029561	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
h3k27ac_ko_wt_up-234	chr15	9070468	9071243	+	0	NA	promoter-TSS (NM_001085410)	promoter-TSS (NM_001085410)	-405	NM_001286255	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding
h3k4me3_ko_wt_up-184	chr5	66336478	66338292	+	0	NA	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	280	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
h3k4me3_ko_wt_up-312	chr9	87144248	87145284	+	0	NA	intron (NM_001177731, intron 2 of 4)	intron (NM_001177731, intron 2 of 4)	460	NM_001101482	244958	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding
h3k27me3_ko_wt_up-400	chr17	41820740	41822180	+	0	NA	Intergenic	Intergenic	-494487	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding
h3k4me3_ko_wt_up-202	chr5	139797781	139798855	+	0	NA	intron (NM_010757, intron 1 of 2)	intron (NM_010757, intron 1 of 2)	6782	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding
h3k27me3_ko_wt_down-425	chr12	89819580	89820861	+	0	NA	intron (NM_001252074, intron 1 of 6)	intron (NM_001252074, intron 1 of 6)	7737	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_up-466	chrX	94256968	94261047	+	0	NA	intron (NM_001039061, intron 2 of 2)	intron (NM_001039061, intron 2 of 2)	-15567	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k4me3_ko_wt_down-85	chr7	79934938	79936151	+	0	NA	promoter-TSS (NM_027420)	promoter-TSS (NM_027420)	-280	NM_027420	70420	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding
h3k27me3_ko_wt_up-341	chr15	6303546	6308571	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	6269	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k27ac_ko_wt_down-80	chr3	133154473	133155536	+	0	NA	Intergenic	L2a|LINE|L2	63051	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22	integrator complex subunit 12	protein-coding
h3k27ac_ko_wt_down-23	chr1	103472085	103473041	+	0	NA	Intergenic	Intergenic	-1296256	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
h3k4me3_ko_wt_down-44	chr4	62470322	62471368	+	0	NA	promoter-TSS (NM_023597)	promoter-TSS (NM_023597)	50	NM_001290521	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding
h3k4me3_ko_wt_down-95	chr8	4238021	4239998	+	0	NA	exon (NM_001164172, exon 1 of 12)	exon (NM_001164172, exon 1 of 12)	269	NM_011944	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding
h3k27ac_ko_wt_down-136	chr6	45327933	45328389	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	268100	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k27me3_ko_wt_down-165	chr4	66366536	66367982	+	0	NA	intron (NM_207109, intron 1 of 22)	intron (NM_207109, intron 1 of 22)	37224	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27ac_ko_wt_down-90	chr4	31361756	31362558	+	0	NA	Intergenic	Intergenic	-601950	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27me3_ko_wt_down-191	chr4	94132588	94133629	+	0	NA	Intergenic	L1_Mur3|LINE|L1	423688	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k4me3_het_wt_down-3	chr7	90386872	90387755	+	0	NA	5' UTR (NM_001040087, exon 1 of 10)	5' UTR (NM_001040087, exon 1 of 10)	332	NM_001040088	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding
h3k27me3_ko_wt_down-21	chr1	62142107	62144086	+	0	NA	intron (NM_001081050, intron 4 of 22)	intron (NM_001081050, intron 4 of 22)	504272	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding
h3k27me3_ko_wt_down-52	chr1	190653951	190655912	+	0	NA	Intergenic	Intergenic	256839	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding
h3k27ac_ko_wt_down-127	chr6	17198958	17200210	+	0	NA	intron (NR_102304, intron 1 of 2)	(TCC)n|Simple_repeat|Simple_repeat	1477	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA
h3k27me3_ko_wt_up-210	chr8	90345181	90346984	+	0	NA	intron (NM_172913, intron 1 of 6)	intron (NM_172913, intron 1 of 6)	2170	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
h3k27me3_ko_wt_up-390	chr16	67060860	67062097	+	0	NA	intron (NM_178721, intron 1 of 9)	intron (NM_178721, intron 1 of 9)	404360	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
h3k27me3_ko_wt_up-502	chrX	140009586	140012987	+	0	NA	intron (NM_001081668, intron 8 of 8)	HAL1|LINE|L1	-12691	NM_153586	237073	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding
h3k4me3_ko_wt_down-132	chr11	20631169	20633489	+	0	NA	intron (NM_001038625, intron 1 of 1)	CpG	352	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding
h3k27ac_ko_wt_up-290	chrX	150457974	150459103	+	0	NA	intron (NM_001164683, intron 1 of 2)	intron (NM_001164683, intron 1 of 2)	612	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding
h3k27me3_ko_wt_down-339	chr9	22734222	22737106	+	0	NA	intron (NM_181316, intron 18 of 21)	intron (NM_181316, intron 18 of 21)	259949	NM_181316	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding
h3k27me3_het_wt_down-11	chrX	13334537	13336589	+	0	NA	Intergenic	B2_Mm2|SINE|B2	54541	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding
h3k27me3_ko_wt_down-534	chr16	56605812	56607936	+	0	NA	intron (NM_001014424, intron 18 of 36)	intron (NM_001014424, intron 18 of 36)	110576	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding
h3k27ac_ko_wt_down-41	chr2	44570129	44572114	+	0	NA	intron (NM_172662, intron 9 of 10)	intron (NM_172662, intron 9 of 10)	290501	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
h3k27me3_ko_wt_up-380	chr16	23979236	23982716	+	0	NA	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	7636	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding
h3k27me3_ko_wt_up-323	chr14	67478863	67481246	+	0	NA	Intergenic	Intergenic	-82312	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA
h3k27me3_ko_wt_up-355	chr15	34676370	34681091	+	0	NA	promoter-TSS (NM_145469)	promoter-TSS (NM_145469)	-24	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding
h3k27me3_ko_wt_down-399	chr12	39074122	39079638	+	0	NA	Intergenic	Intergenic	293169	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k27me3_ko_wt_down-594	chr18	13861085	13863009	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	110686	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k4me3_ko_wt_up-362	chr11	75794414	75795400	+	0	NA	intron (NM_007873, intron 1 of 8)	intron (NM_007873, intron 1 of 8)	1153	NM_007873	13447	Mm.5137	NM_007873	ENSMUSG00000020848	Doc2b	-	double C2, beta	protein-coding
h3k4me3_ko_wt_up-380	chr11	101983907	101985168	+	0	NA	intron (NM_028207, intron 1 of 2)	CpG	254	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding
h3k27me3_ko_wt_up-497	chrX	105170959	105171716	+	0	NA	Intergenic	L1_Rod|LINE|L1	-5832	NR_002167	279610	Mm.418157	NR_002167		E530001F21Rik	-	RIKEN cDNA E530001F21 gene	pseudo
h3k27me3_ko_wt_down-131	chr3	145816795	145819641	+	0	NA	intron (NM_026993, intron 1 of 5)	intron (NM_026993, intron 1 of 5)	59526	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k27me3_het_wt_down-8	chr17	36178727	36184540	+	0	NA	TTS (NR_033619)	TTS (NR_033619)	2856	NR_033619	625785	Mm.390996	NR_033619		Gm6623	EG625785	akirin 1 pseudogene	pseudo
h3k27me3_ko_wt_up-478	chrX	101810850	101812600	+	0	NA	Intergenic	Lx8b|LINE|L1	-37660	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding
h3k27me3_ko_wt_up-85	chr2	166421797	166429900	+	0	NA	Intergenic	Intergenic	-21603	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA
h3k4me3_ko_wt_up-224	chr6	106118321	106119236	+	0	NA	promoter-TSS (NM_001109751)	promoter-TSS (NM_001109751)	13	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding
h3k27me3_ko_wt_down-281	chr7	73372001	73373927	+	0	NA	intron (NR_040324, intron 1 of 2)	intron (NR_040324, intron 1 of 2)	-2556	NM_177740	244058	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding
h3k4me3_ko_wt_up-170	chr4	143296998	143299575	+	0	NA	intron (NM_001290822, intron 1 of 4)	intron (NM_001290822, intron 1 of 4)	1278	NM_001290822	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding
h3k27me3_ko_wt_up-487	chrX	103637835	103639910	+	0	NA	Intergenic	Intergenic	8286	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding
h3k4me3_ko_wt_down-50	chr4	120950948	120952561	+	0	NA	promoter-TSS (NM_001005788)	promoter-TSS (NM_001005788)	-53	NM_001005788	381549	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding
h3k4me3_ko_wt_up-146	chr4	57637433	57639597	+	0	NA	intron (NM_001304544, intron 2 of 8)	intron (NM_001304544, intron 2 of 8)	70267	NM_001304544	677884	Mm.331630	NM_001304544		Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding
h3k4me3_ko_wt_up-434	chr13	113292884	113293461	+	0	NA	Intergenic	CpG	83513	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding
h3k27ac_ko_wt_down-55	chr2	149666261	149667069	+	0	NA	Intergenic	Intergenic	-164118	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding
h3k27me3_ko_wt_down-290	chr7	115958069	115959973	+	0	NA	intron (NM_001025559, intron 1 of 15)	intron (NM_001025559, intron 1 of 15)	36065	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
h3k27me3_ko_wt_up-165	chr6	64675270	64681150	+	0	NA	Intergenic	Intergenic	-50936	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-270	chr14	78204004	78204646	+	0	NA	Intergenic	Intergenic	-12847	NR_035499	100316715		NR_035499	ENSMUSG00000087932	Mir1971	mmu-mir-1971	microRNA 1971	ncRNA
h3k27ac_ko_wt_down-178	chr9	9476809	9478274	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-238528	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
h3k27me3_ko_wt_down-363	chr10	105570503	105573143	+	0	NA	intron (NM_177368, intron 1 of 11)	intron (NM_177368, intron 1 of 11)	2656	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
h3k4me3_ko_wt_up-133	chr3	154646819	154647479	+	0	NA	Intergenic	Intergenic	-50051	NM_001168358	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_up-283	chr19	41164397	41165587	+	0	NA	intron (NM_011904, intron 2 of 20)	intron (NM_011904, intron 2 of 20)	41782	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding
h3k4me3_ko_wt_up-88	chr2	158375505	158377074	+	0	NA	exon (NM_175692, exon 2 of 5)	exon (NM_175692, exon 2 of 5)	651	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding
h3k4me3_ko_wt_up-232	chr6	131377408	131377731	+	0	NA	intron (NM_139117, intron 5 of 9)	B1F|SINE|Alu	10881	NM_011733	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding
h3k4me3_ko_wt_up-354	chr11	35120775	35122802	+	0	NA	intron (NM_011412, intron 1 of 35)	CpG	332	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding
h3k27ac_ko_wt_up-182	chr10	53105026	53106185	+	0	NA	intron (NM_178675, intron 7 of 7)	intron (NM_178675, intron 7 of 7)	-174665	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA
h3k27me3_ko_wt_down-273	chr7	50149364	50152377	+	0	NA	intron (NM_001037906, intron 4 of 19)	intron (NM_001037906, intron 4 of 19)	175520	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding
h3k27me3_ko_wt_down-144	chr4	34939129	34941863	+	0	NA	Intergenic	Intergenic	-29015	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA
h3k27ac_ko_wt_up-204	chr12	106282882	106283158	+	0	NA	Intergenic	Intergenic	164646	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
h3k4me3_ko_wt_up-422	chr13	77892299	77892997	+	0	NA	intron (NM_001163419, intron 5 of 9)	intron (NM_001163419, intron 5 of 9)	-132254	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding
h3k27ac_ko_wt_up-160	chr8	76251936	76252812	+	0	NA	Intergenic	Intergenic	647799	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
h3k27me3_ko_wt_down-451	chr13	23384418	23389769	+	0	NA	Intergenic	Intergenic	-17885	NM_172586	218100	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding
h3k4me3_ko_wt_up-13	chr1	78310078	78311268	+	0	NA	intron (NM_001004173, intron 1 of 4)	CpG	327	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
h3k27ac_ko_wt_up-28	chr1	168221063	168221931	+	0	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	210672	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
h3k27me3_ko_wt_up-221	chr9	92991118	92992804	+	0	NA	intron (NR_040756, intron 2 of 3)	intron (NR_040756, intron 2 of 3)	13772	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
h3k27me3_ko_wt_up-308	chr13	96132369	96135714	+	0	NA	Intergenic	Intergenic	-1464	NM_029210	75209	Mm.40436	NM_029210		Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding
h3k27me3_ko_wt_up-275	chr12	14823837	14825720	+	0	NA	Intergenic	Intergenic	225611	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA
h3k4me3_ko_wt_up-39	chr1	180942005	180942850	+	0	NA	promoter-TSS (NM_144794)	promoter-TSS (NM_144794)	-91	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding
h3k4me3_ko_wt_up-99	chr2	176798606	176799412	+	0	NA	intron (NM_001205057, intron 1 of 3)	RMER17B|LTR|ERVK	409	NM_001205057	100039123	Mm.389409	NM_001205057	ENSMUSG00000078877	Gm14295	OTTMUSG00000016219	predicted gene 14295	protein-coding
h3k4me3_ko_wt_up-587	chrX	141723945	141725615	+	0	NA	exon (NM_010572, exon 1 of 2)	exon (NM_010572, exon 1 of 2)	437	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding
h3k27ac_ko_wt_down-36	chr2	20692536	20693461	+	0	NA	intron (NM_178059, intron 4 of 18)	intron (NM_178059, intron 4 of 18)	173485	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding
h3k27me3_ko_wt_down-180	chr4	84626027	84633414	+	0	NA	intron (NM_172870, intron 1 of 5)	intron (NM_172870, intron 1 of 5)	45366	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
h3k27me3_ko_wt_up-336	chr14	123193272	123194575	+	0	NA	Intergenic	Intergenic	24737	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k27me3_ko_wt_down-228	chr5	51421918	51424926	+	0	NA	Intergenic	Intergenic	130499	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding
h3k27me3_ko_wt_up-243	chr10	75668402	75669139	+	0	NA	intron (NM_172549, intron 29 of 36)	intron (NM_172549, intron 29 of 36)	-24762	NM_001162913	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding
h3k4me3_ko_wt_up-393	chr12	31558911	31559720	+	0	NA	exon (NM_011867, exon 2 of 21)	exon (NM_011867, exon 2 of 21)	654	NM_011867	23985	Mm.100187	NM_011867	ENSMUSG00000020651	Slc26a4	Pds|pendrin	solute carrier family 26, member 4	protein-coding
h3k27me3_ko_wt_down-230	chr5	69539902	69541619	+	0	NA	intron (NM_023784, intron 2 of 5)	intron (NM_023784, intron 2 of 5)	1887	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding
h3k27me3_ko_wt_down-541	chr16	58132160	58135763	+	0	NA	Intergenic	Intergenic	-274574	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding
h3k27me3_ko_wt_down-518	chr15	32697576	32700388	+	0	NA	Intergenic	Lx9|LINE|L1	-221741	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
h3k4me3_ko_wt_down-191	chr17	46282282	46283312	+	0	NA	intron (NM_028751, intron 1 of 10)	intron (NM_028751, intron 1 of 10)	229	NM_028751	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding
h3k27me3_ko_wt_down-236	chr5	82329470	82331766	+	0	NA	Intergenic	Intergenic	468447	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
h3k27ac_ko_wt_up-110	chr5	3458635	3459523	+	0	NA	intron (NM_009873, intron 4 of 7)	intron (NM_009873, intron 4 of 7)	-84754	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding
h3k27me3_ko_wt_down-182	chr4	84664074	84666830	+	0	NA	intron (NM_172870, intron 1 of 5)	intron (NM_172870, intron 1 of 5)	9634	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
h3k27ac_ko_wt_up-123	chr6	5408514	5409689	+	0	NA	intron (NM_023048, intron 3 of 5)	intron (NM_023048, intron 3 of 5)	25715	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding
h3k27me3_ko_wt_up-488	chrX	103689042	103690495	+	0	NA	Intergenic	Intergenic	59182	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding
h3k4me3_ko_wt_up-150	chr4	70378061	70378336	+	0	NA	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32237	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
h3k27ac_ko_wt_up-79	chr3	74344635	74345688	+	0	NA	Intergenic	Intergenic	-327884	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA
h3k27me3_ko_wt_up-477	chrX	101232243	101233092	+	0	NA	Intergenic	MIR|SINE|MIR	-10104	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding
h3k27me3_ko_wt_down-186	chr4	91581414	91583651	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-182548	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
h3k27me3_ko_wt_down-499	chr14	100450085	100457667	+	0	NA	Intergenic	Intergenic	-304080	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27me3_ko_wt_up-498	chrX	105185713	105187453	+	0	NA	Intergenic	Intergenic	-21078	NR_002167	279610	Mm.418157	NR_002167		E530001F21Rik	-	RIKEN cDNA E530001F21 gene	pseudo
h3k27me3_ko_wt_down-232	chr5	75187526	75191705	+	0	NA	intron (NM_011058, intron 21 of 22)	intron (NM_011058, intron 21 of 22)	12784	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA
h3k4me3_ko_wt_up-483	chr16	22437368	22440746	+	0	NA	intron (NM_023794, intron 1 of 12)	intron (NM_023794, intron 1 of 12)	513	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding
h3k27ac_ko_wt_up-12	chr1	52669649	52670014	+	0	NA	intron (NM_133829, intron 3 of 6)	intron (NM_133829, intron 3 of 6)	39126	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Tmem194b	5330401P04Rik|9830163O08|Nemp2	transmembrane protein 194B	protein-coding
h3k4me3_ko_wt_up-404	chr12	110844538	110845355	+	0	NA	Intergenic	CpG	-4007	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding
h3k27me3_ko_wt_down-597	chr18	13881311	13883240	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	90458	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k4me3_ko_wt_up-48	chr2	25304681	25305599	+	0	NA	exon (NM_001177656, exon 7 of 20)	exon (NM_001177656, exon 7 of 20)	13920	NM_001242940	320354	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding
h3k27ac_ko_wt_up-222	chr13	110584998	110585629	+	0	NA	Intergenic	Intergenic	190269	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding
h3k27ac_ko_wt_down-146	chr6	137712495	137713705	+	0	NA	Intergenic	Intergenic	-21982	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
h3k4me3_het_wt_down-4	chr9	51075448	51077326	+	0	NA	intron (NM_001033534, intron 1 of 7)	intron (NM_001033534, intron 1 of 7)	707	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding
h3k27ac_ko_wt_down-112	chr5	57119533	57120175	+	0	NA	Intergenic	Intergenic	598065	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
h3k27me3_ko_wt_down-325	chr8	59906749	59908430	+	0	NA	Intergenic	Intergenic	81940	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
h3k27ac_ko_wt_down-311	chr17	51533979	51535176	+	0	NA	intron (NR_037250, intron 3 of 4)	intron (NR_037250, intron 3 of 4)	-86308	NR_046166	328837	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA
h3k27me3_ko_wt_down-537	chr16	57451694	57453398	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-96696	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
h3k27ac_ko_wt_down-24	chr1	104807920	104809011	+	0	NA	intron (NM_011800, intron 1 of 11)	intron (NM_011800, intron 1 of 11)	39646	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
h3k4me3_ko_wt_down-43	chr4	57567301	57569146	+	0	NA	promoter-TSS (NM_172868)	promoter-TSS (NM_172868)	-25	NM_172868	242481	Mm.331630	NM_172868		Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding
h3k27me3_ko_wt_up-462	chrX	94235694	94238770	+	0	NA	intron (NM_001039061, intron 1 of 2)	MER45B|DNA|hAT-Tip100	2302	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27me3_ko_wt_up-370	chr15	95583467	95585339	+	0	NA	Intergenic	Intergenic	-56151	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding
h3k4me3_ko_wt_down-142	chr11	110479098	110480663	+	0	NA	intron (NM_011943, intron 1 of 11)	intron (NM_011943, intron 1 of 11)	80758	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding
h3k4me3_ko_wt_down-75	chr6	114040952	114041904	+	0	NA	intron (NM_009723, intron 1 of 21)	intron (NM_009723, intron 1 of 21)	652	NM_009723	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding
h3k27me3_ko_wt_down-439	chr13	8191959	8195348	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-9213	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27me3_ko_wt_down-292	chr7	136196064	136199421	+	0	NA	Intergenic	Intergenic	-70582	NR_102277	77383	Mm.227745	NR_102277		C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA
h3k27ac_ko_wt_down-70	chr3	68759197	68760074	+	0	NA	Intergenic	Intergenic	68211	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding
h3k4me3_ko_wt_down-21	chr2	120567083	120568524	+	0	NA	5' UTR (NM_009222, exon 1 of 8)	5' UTR (NM_009222, exon 1 of 8)	132	NM_001177792	20619	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding
h3k27ac_ko_wt_down-297	chr15	80536132	80536470	+	0	NA	intron (NM_001163189, intron 1 of 5)	intron (NM_001163189, intron 1 of 5)	24169	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
h3k27me3_ko_wt_up-324	chr14	68050133	68051765	+	0	NA	Intergenic	Intergenic	-32935	NM_010910	18039	Mm.1956	NM_010910		Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding
h3k27me3_ko_wt_up-506	chrX	141510935	141512396	+	0	NA	intron (NM_001163155, intron 1 of 50)	L1M2|LINE|L1	36246	NM_007736	12830	Mm.286892	NM_007736	ENSMUSG00000031274	Col4a5	-	collagen, type IV, alpha 5	protein-coding
h3k27ac_ko_wt_down-167	chr8	17053432	17053988	+	0	NA	intron (NM_053171, intron 2 of 69)	intron (NM_053171, intron 2 of 69)	481675	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
h3k27me3_het_wt_up-15	chr6	93421106	93424320	+	0	NA	Intergenic	Intergenic	482131	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA
h3k4me3_ko_wt_down-116	chr9	77249890	77252707	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	96572	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
h3k27me3_ko_wt_down-296	chr8	24619169	24620101	+	0	NA	intron (NM_010084, intron 17 of 19)	intron (NM_010084, intron 17 of 19)	-22683	NM_008324	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding
h3k27me3_ko_wt_down-61	chr2	56123090	56124841	+	0	NA	Intergenic	Intergenic	-661846	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
h3k4me3_het_wt_down-14	chr17	6601303	6602555	+	0	NA	intron (NM_001166630, intron 1 of 4)	intron (NM_001166630, intron 1 of 4)	150	NM_001166630	100040563	Mm.457381	NM_001166630		Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding
h3k27me3_ko_wt_down-262	chr6	81068997	81073437	+	0	NA	Intergenic	B3A|SINE|B2	824446	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
h3k27me3_ko_wt_down-153	chr4	52841558	52844206	+	0	NA	Intergenic	Intergenic	13629	NM_146824	258821	Mm.297704	NM_146824	ENSMUSG00000049648	Olfr273	MOR262-8	olfactory receptor 273	protein-coding
h3k27ac_ko_wt_down-214	chr11	15386114	15386858	+	0	NA	Intergenic	Intergenic	787246	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
h3k4me3_ko_wt_down-38	chr3	149442317	149445707	+	0	NA	Intergenic	Intergenic	169275	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
h3k27me3_ko_wt_up-124	chr4	153416891	153418096	+	0	NA	intron (NM_001099299, intron 2 of 5)	intron (NM_001099299, intron 2 of 5)	65337	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
h3k4me3_ko_wt_down-119	chr10	5193867	5195125	+	0	NA	exon (NM_001079686, exon 1 of 55)	exon (NM_001079686, exon 1 of 55)	211	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
h3k27me3_ko_wt_down-266	chr6	120187731	120189193	+	0	NA	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	95082	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding
h3k27me3_ko_wt_up-170	chr6	91807244	91808786	+	0	NA	promoter-TSS (NM_001159507)	promoter-TSS (NM_001159507)	-622	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding
h3k27ac_ko_wt_down-149	chr7	53608439	53609306	+	0	NA	Intergenic	Intergenic	283017	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
h3k27me3_ko_wt_down-376	chr11	18604740	18605714	+	0	NA	Intergenic	Intergenic	413742	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
h3k27me3_ko_wt_up-521	chrX	169776452	169777779	+	0	NA	non-coding (NR_003635, exon 3 of 3)	non-coding (NR_003635, exon 3 of 3)	2520	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k27ac_ko_wt_down-281	chr14	106844640	106845955	+	0	NA	Intergenic	Intergenic	-358777	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
h3k4me3_ko_wt_up-141	chr4	44663641	44664844	+	0	NA	intron (NM_008782, intron 5 of 9)	CpG	-38558	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA
h3k27me3_ko_wt_down-372	chr11	9013786	9016579	+	0	NA	TTS (NM_001290520)	TTS (NM_001290520)	-3991	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	Hus1 homolog (S. pombe)	protein-coding
h3k27me3_ko_wt_down-321	chr8	55935367	55936343	+	0	NA	Intergenic	Intergenic	-4970	NM_080438	110304	Mm.307061	NM_080438		Glra3	-	glycine receptor, alpha 3 subunit	protein-coding
h3k4me3_ko_wt_up-324	chr10	42958120	42958612	+	0	NA	3' UTR (NM_172938, exon 9 of 9)	3' UTR (NM_172938, exon 9 of 9)	97854	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-567	chr17	47399859	47403271	+	0	NA	promoter-TSS (NM_008189)	promoter-TSS (NM_008189)	-981	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding
h3k27me3_ko_wt_up-416	chr18	61045144	61046188	+	0	NA	intron (NM_008809, intron 1 of 22)	intron (NM_008809, intron 1 of 22)	516	NM_001146268	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding
h3k27me3_ko_wt_up-99	chr3	60928512	60930189	+	0	NA	Intergenic	Intergenic	-73435	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding
h3k27me3_ko_wt_up-429	chr19	23141894	23143556	+	0	NA	intron (NM_010638, intron 1 of 1)	intron (NM_010638, intron 1 of 1)	1499	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding
h3k27ac_ko_wt_down-143	chr6	89465951	89466644	+	0	NA	intron (NM_001167736, intron 4 of 6)	intron (NM_001167736, intron 4 of 6)	-103684	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding
h3k4me3_ko_wt_up-452	chr14	100458909	100459995	+	0	NA	Intergenic	Intergenic	-309656	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k4me3_ko_wt_up-163	chr4	133545035	133546290	+	0	NA	intron (NM_010948, intron 1 of 7)	CpG	365	NM_010948	18221	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nuclear distribution gene C homolog (Aspergillus)	protein-coding
h3k27me3_ko_wt_up-44	chr2	42144611	42147353	+	0	NA	intron (NM_053011, intron 2 of 90)	intron (NM_053011, intron 2 of 90)	301586	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA
h3k27me3_ko_wt_up-98	chr3	48808212	48810319	+	0	NA	Intergenic	Intergenic	-200165	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
h3k27me3_ko_wt_up-260	chr11	72264736	72267796	+	0	NA	promoter-TSS (NR_045922)	promoter-TSS (NR_045922)	338	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding
h3k4me3_ko_wt_up-262	chr7	120552983	120553688	+	0	NA	Intergenic	Intergenic	-44290	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo
h3k4me3_ko_wt_down-113	chr9	53829530	53830013	+	0	NA	Intergenic	Intergenic	-20480	NM_025540	66402	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding
h3k27ac_ko_wt_down-205	chr10	56174927	56175527	+	0	NA	intron (NM_001033385, intron 13 of 32)	intron (NM_001033385, intron 13 of 32)	53462	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding
h3k27me3_ko_wt_down-129	chr3	145748850	145751190	+	0	NA	Intergenic	Intergenic	-8672	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k4me3_ko_wt_up-591	chrY	90807868	90808257	+	0	NA	intron (NM_133362, intron 2 of 2)	intron (NM_133362, intron 2 of 2)	22620	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
h3k4me3_ko_wt_up-16	chr1	86434089	86435662	+	0	NA	Intergenic	Intergenic	8546	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding
h3k27me3_ko_wt_down-469	chr13	116082889	116086617	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	224935	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
h3k4me3_ko_wt_down-128	chr10	97312346	97314247	+	0	NA	Intergenic	Intergenic	-110182	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
h3k27ac_ko_wt_down-308	chr16	64334759	64335351	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	144079	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding
h3k27ac_ko_wt_up-130	chr6	65081707	65082444	+	0	NA	intron (NM_001253392, intron 7 of 21)	intron (NM_001253392, intron 7 of 21)	38869	NM_001253392	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding
h3k4me3_ko_wt_up-280	chr8	36094111	36096961	+	0	NA	intron (NM_172911, intron 1 of 5)	intron (NM_172911, intron 1 of 5)	708	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
h3k27me3_ko_wt_down-333	chr8	89531189	89532894	+	0	NA	Intergenic	Intergenic	-487879	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-545	chr16	81422177	81433968	+	0	NA	intron (NM_010954, intron 1 of 15)	intron (NM_010954, intron 1 of 15)	227375	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
h3k27me3_ko_wt_up-136	chr5	90634186	90636307	+	0	NA	intron (NM_001310656, intron 1 of 10)	intron (NM_001310656, intron 1 of 10)	5281	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
h3k27me3_ko_wt_up-206	chr8	79433243	79434958	+	0	NA	Intergenic	Intergenic	-34632	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
h3k27ac_ko_wt_up-149	chr8	15149041	15149629	+	0	NA	Intergenic	Intergenic	91682	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
h3k27me3_ko_wt_up-108	chr3	134234192	134235132	+	0	NA	Intergenic	Intergenic	-1833	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding
h3k27me3_ko_wt_down-44	chr1	129471580	129473147	+	0	NA	intron (NM_172485, intron 2 of 27)	intron (NM_172485, intron 2 of 27)	199059	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
h3k27me3_ko_wt_up-456	chrX	94099418	94102444	+	0	NA	intron (NM_011768, intron 2 of 7)	intron (NM_011768, intron 2 of 7)	22476	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27ac_ko_wt_up-194	chr11	19026496	19026867	+	0	NA	Intergenic	Intergenic	-7712	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
h3k27ac_ko_wt_up-148	chr8	14745831	14746651	+	0	NA	intron (NM_001145965, intron 6 of 14)	intron (NM_001145965, intron 6 of 14)	-142295	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding
h3k27me3_ko_wt_up-238	chr10	68060564	68061001	+	0	NA	Intergenic	Intergenic	81184	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
h3k4me3_ko_wt_down-187	chr17	23592295	23593441	+	0	NA	intron (NM_011747, intron 1 of 5)	CpG	6619	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding
h3k4me3_ko_wt_up-145	chr4	57039216	57039967	+	0	NA	Intergenic	Intergenic	-49200	NM_001142965	230235	Mm.207654	NM_001142965		Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding
h3k27ac_ko_wt_down-65	chr3	31306715	31307396	+	0	NA	intron (NM_172861, intron 1 of 7)	intron (NM_172861, intron 1 of 7)	3264	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding
h3k4me3_ko_wt_up-11	chr1	62702665	62708607	+	0	NA	intron (NM_001077404, intron 1 of 16)	intron (NM_001077404, intron 1 of 16)	2319	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
h3k4me3_ko_wt_down-60	chr5	77057943	77058929	+	0	NA	intron (NM_027970, intron 6 of 8)	intron (NM_027970, intron 6 of 8)	36831	NM_001159900	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding
h3k27ac_ko_wt_up-15	chr1	63819698	63820211	+	0	NA	Intergenic	Intergenic	-50687	NM_001256158	74426	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding
h3k27me3_ko_wt_down-455	chr13	47399438	47403607	+	0	NA	Intergenic	RLTR31B2|LTR|ERVK	207519	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding
h3k27me3_ko_wt_up-86	chr2	166444641	166447172	+	0	NA	Intergenic	Intergenic	-1545	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA
h3k27ac_ko_wt_up-252	chr16	55466498	55467387	+	0	NA	Intergenic	Intergenic	-27789	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA
h3k27me3_ko_wt_down-370	chr10	116175771	116178492	+	0	NA	promoter-TSS (NM_001161839)	promoter-TSS (NM_001161839)	-127	NM_001161839	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding
h3k4me3_ko_wt_up-302	chr9	31912833	31914334	+	0	NA	promoter-TSS (NM_013800)	promoter-TSS (NM_013800)	-298	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding
h3k4me3_ko_wt_up-212	chr6	22205413	22206595	+	0	NA	intron (NM_001081351, intron 15 of 21)	intron (NM_001081351, intron 15 of 21)	-82223	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding
h3k27ac_ko_wt_up-153	chr8	34325512	34327009	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-159548	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA
h3k4me3_ko_wt_up-120	chr3	97609458	97610491	+	0	NA	intron (NM_026539, intron 1 of 22)	CpG	216	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding
h3k4me3_ko_wt_down-135	chr11	69913733	69914975	+	0	NA	TTS (NM_001013414)	TTS (NM_001013414)	162	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding
h3k27me3_ko_wt_down-260	chr6	80627702	80629775	+	0	NA	intron (NM_001134743, intron 2 of 2)	intron (NM_001134743, intron 2 of 2)	609095	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding
h3k27me3_ko_wt_down-488	chr14	87315759	87318614	+	0	NA	Intergenic	Intergenic	-99397	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
h3k4me3_ko_wt_up-113	chr3	66746569	66747380	+	0	NA	Intergenic	Intergenic	231837	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding
h3k27me3_ko_wt_up-365	chr15	76197002	76199428	+	0	NA	promoter-TSS (NM_201393)	promoter-TSS (NM_201393)	-6	NM_201393	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding
h3k27me3_ko_wt_down-55	chr2	10989831	10991068	+	0	NA	Intergenic	Intergenic	-181933	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding
h3k27me3_ko_wt_down-393	chr11	100819318	100821356	+	0	NA	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	2233	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding
h3k4me3_ko_wt_up-274	chr8	12390275	12391111	+	0	NA	intron (NR_027975, intron 1 of 7)	intron (NR_027975, intron 1 of 7)	-4826	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding
h3k27me3_ko_wt_down-20	chr1	61441686	61445526	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	65174	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27ac_ko_wt_up-18	chr1	82527669	82527962	+	0	NA	intron (NM_007735, intron 15 of 47)	intron (NM_007735, intron 15 of 47)	59034	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding
h3k27me3_ko_wt_down-336	chr8	123600539	123601425	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-34895	NR_046140	100861488		NR_046140	ENSMUSG00000094916	Gm26391	Rn5s17	predicted gene, 26391	rRNA
h3k4me3_ko_wt_up-566	chr19	41311120	41311724	+	0	NA	intron (NM_031376, intron 8 of 16)	LTR87|LTR|ERVL?	-47418	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding
h3k4me3_ko_wt_up-23	chr1	136050942	136051612	+	0	NA	TTS (NM_001270609)	TTS (NM_001270609)	473	NM_001270609	226439	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute complex homolog 5 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-175	chr8	89872170	89873638	+	0	NA	Intergenic	Intergenic	475348	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
h3k27ac_ko_wt_up-260	chr17	51806081	51807797	+	0	NA	intron (NM_009122, intron 2 of 10)	intron (NM_009122, intron 2 of 10)	5115	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
h3k27ac_ko_wt_up-104	chr4	82531886	82533323	+	0	NA	Intergenic	Intergenic	-26825	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding
h3k4me3_ko_wt_up-42	chr1	195241661	195241935	+	0	NA	Intergenic	CpG	-65083	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding
h3k27ac_ko_wt_up-282	chr19	31308623	31308990	+	0	NA	intron (NM_011160, intron 2 of 17)	intron (NM_011160, intron 2 of 17)	-92410	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA
h3k27me3_ko_wt_down-332	chr8	76355703	76357223	+	0	NA	Intergenic	B4|SINE|B4	543710	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA
h3k4me3_ko_wt_up-132	chr3	149190583	149191464	+	0	NA	Intergenic	Intergenic	-83714	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
h3k27me3_ko_wt_up-56	chr2	77978355	77981296	+	0	NA	Intergenic	Intergenic	-33469	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-481	chr14	47454801	47460162	+	0	NA	Intergenic	Intergenic	-15080	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
h3k27ac_ko_wt_up-83	chr3	110338900	110339803	+	0	NA	Intergenic	Intergenic	-88352	NR_024139	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding
h3k27ac_ko_wt_up-97	chr4	20401202	20401420	+	0	NA	intron (NM_172987, intron 3 of 4)	intron (NM_172987, intron 3 of 4)	359259	NM_010281	14590	Mm.20461	NM_010281		Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding
h3k27ac_ko_wt_up-37	chr2	77909263	77910603	+	0	NA	intron (NM_030560, intron 15 of 20)	intron (NM_030560, intron 15 of 20)	36423	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_up-183	chr10	57822396	57823076	+	0	NA	Intergenic	Intergenic	28192	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding
h3k4me3_ko_wt_up-505	chr17	28079580	28080488	+	0	NA	exon (NM_013687, exon 2 of 10)	exon (NM_013687, exon 2 of 10)	550	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding
h3k4me3_ko_wt_up-233	chr6	136551109	136552044	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32725	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
h3k4me3_ko_wt_up-410	chr13	19622691	19624328	+	0	NA	exon (NM_016687, exon 1 of 6)	exon (NM_016687, exon 1 of 6)	334	NM_016687	20379	Mm.42095	NM_016687	ENSMUSG00000021319	Sfrp4	-	secreted frizzled-related protein 4	protein-coding
h3k4me3_ko_wt_up-423	chr13	83662035	83663422	+	0	NA	3' UTR (NM_025282, exon 11 of 11)	3' UTR (NM_025282, exon 11 of 11)	-65378	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
h3k4me3_het_wt_down-6	chr13	74521904	74523193	+	0	NA	Intergenic	Intergenic	-28598	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding
h3k27me3_ko_wt_up-101	chr3	85885504	85888880	+	0	NA	5' UTR (NM_177130, exon 1 of 2)	5' UTR (NM_177130, exon 1 of 2)	326	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding
h3k27ac_ko_wt_down-166	chr8	7461948	7463825	+	0	NA	Intergenic	Intergenic	1197887	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k4me3_ko_wt_down-117	chr9	83663913	83665711	+	0	NA	Intergenic	Intergenic	-26663	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
h3k27me3_ko_wt_up-231	chr10	12571680	12575908	+	0	NA	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	287941	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
h3k27ac_ko_wt_down-19	chr1	72284047	72285105	+	0	NA	promoter-TSS (NM_023523)	promoter-TSS (NM_023523)	203	NM_175564	271711	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding
h3k27me3_ko_wt_down-225	chr5	50442881	50449960	+	0	NA	Intergenic	Lx8|LINE|L1	193658	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
h3k27ac_ko_wt_down-26	chr1	121091324	121092187	+	0	NA	intron (NR_110450, intron 1 of 2)	B4A|SINE|B4	4350	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
h3k27me3_ko_wt_down-515	chr15	26583706	26585206	+	0	NA	intron (NM_176959, intron 2 of 3)	intron (NM_176959, intron 2 of 3)	275408	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
h3k4me3_ko_wt_down-42	chr4	34886207	34887746	+	0	NA	Intergenic	CpG	-4028	NM_013889	30046	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding
h3k27me3_ko_wt_up-463	chrX	94239384	94242485	+	0	NA	intron (NM_001039061, intron 1 of 2)	Charlie1b|DNA|hAT-Charlie	6004	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27ac_ko_wt_down-296	chr15	68276511	68277235	+	0	NA	Intergenic	Lx5|LINE|L1	-18017	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding
h3k27me3_ko_wt_up-326	chr14	74639465	74643634	+	0	NA	5' UTR (NM_172812, exon 1 of 3)	5' UTR (NM_172812, exon 1 of 3)	709	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding
h3k27me3_het_wt_up-8	chr2	78004106	78012774	+	0	NA	Intergenic	MLTR11B|LTR|ERVK	-42737	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-392	chr11	91587481	91589775	+	0	NA	Intergenic	Lx7|LINE|L1	-11073	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
h3k27me3_ko_wt_up-289	chr13	7508118	7510529	+	0	NA	Intergenic	Intergenic	-693543	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k4me3_ko_wt_down-162	chr13	57906089	57908371	+	0	NA	intron (NM_001166464, intron 2 of 10)	intron (NM_001166464, intron 2 of 10)	1102	NM_001166465	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding
h3k27me3_het_wt_up-9	chr2	78019787	78021455	+	0	NA	Intergenic	RMER16|LTR|ERVK	-30556	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-41	chr1	121028799	121033834	+	0	NA	Intergenic	Intergenic	-56089	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
h3k27me3_ko_wt_down-150	chr4	52797279	52799610	+	0	NA	Intergenic	Intergenic	-16160	NR_040661	75367	Mm.159510	NR_040661	ENSMUSG00000070984	4930552N02Rik	-	RIKEN cDNA 4930552N02 gene	ncRNA
h3k4me3_ko_wt_up-392	chr12	29367863	29368875	+	0	NA	Intergenic	Intergenic	-160015	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding
h3k27me3_ko_wt_down-396	chr12	39035351	39037290	+	0	NA	Intergenic	Intergenic	252609	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k27ac_ko_wt_down-147	chr6	142963166	142965881	+	0	NA	promoter-TSS (NM_011374)	promoter-TSS (NM_011374)	-71	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding
h3k27me3_ko_wt_up-319	chr14	23286302	23287258	+	0	NA	Intergenic	L1M5|LINE|L1	-192209	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA
h3k27me3_ko_wt_up-299	chr13	45468925	45472771	+	0	NA	Intergenic	PB1D7|SINE|Alu	-36596	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding
h3k27me3_ko_wt_up-504	chrX	140907438	140908943	+	0	NA	intron (NM_030181, intron 1 of 6)	intron (NM_030181, intron 1 of 6)	582	NM_030181	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding
h3k4me3_ko_wt_up-460	chr15	36715935	36716513	+	0	NA	Intergenic	Intergenic	74708	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding
h3k27ac_ko_wt_up-122	chr6	3340387	3341471	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	52410	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo
h3k27me3_ko_wt_down-390	chr11	45798226	45800356	+	0	NA	Intergenic	Intergenic	-8792	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA
h3k27ac_ko_wt_up-43	chr2	78004211	78004595	+	0	NA	Intergenic	Intergenic	-46774	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_up-359	chr15	40938490	40943159	+	0	NA	intron (NM_011766, intron 4 of 7)	intron (NM_011766, intron 4 of 7)	285782	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding
h3k27me3_ko_wt_down-156	chr4	59393140	59394958	+	0	NA	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	44584	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
h3k27me3_ko_wt_down-152	chr4	52838042	52840894	+	0	NA	Intergenic	Lx6|LINE|L1	14069	NM_146858	258857	Mm.484340	NM_146858	ENSMUSG00000089717	Olfr275	MOR262-2	olfactory receptor 275	protein-coding
h3k4me3_ko_wt_up-482	chr16	20694740	20696873	+	0	NA	exon (NM_133778, exon 2 of 6)	exon (NM_133778, exon 2 of 6)	749	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding
h3k27me3_ko_wt_down-263	chr6	82976623	82979408	+	0	NA	intron (NM_033079, intron 3 of 9)	intron (NM_033079, intron 3 of 9)	31093	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding
h3k27ac_ko_wt_up-22	chr1	103245827	103246760	+	0	NA	Intergenic	Intergenic	-1522526	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
h3k4me3_ko_wt_down-183	chr17	3396565	3400773	+	0	NA	intron (NM_011878, intron 1 of 26)	intron (NM_011878, intron 1 of 26)	1462	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding
h3k4me3_het_wt_up-16	chr2	177839585	177840669	+	0	NA	intron (NM_001024849, intron 1 of 3)	RMER17B|LTR|ERVK	191	NM_001024849	329575	Mm.425123	NM_001024849		Gm14325	OTTMUSG00000016325	predicted gene 14325	protein-coding
h3k27me3_ko_wt_down-373	chr11	18405244	18406796	+	0	NA	Intergenic	Intergenic	310034	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
h3k4me3_ko_wt_up-250	chr7	51748763	51749769	+	0	NA	Intergenic	Intergenic	113001	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
h3k27ac_ko_wt_up-223	chr13	110652120	110652630	+	0	NA	Intergenic	Intergenic	-251124	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
h3k4me3_ko_wt_up-516	chr17	43801163	43802408	+	0	NA	promoter-TSS (NM_207649)	promoter-TSS (NM_207649)	-66	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
h3k4me3_ko_wt_up-82	chr2	129038925	129039725	+	0	NA	Intergenic	CpG	-26622	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding
h3k27ac_ko_wt_down-59	chr2	178303678	178304359	+	0	NA	intron (NM_001177790, intron 8 of 12)	intron (NM_001177790, intron 8 of 12)	103640	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding
h3k27ac_ko_wt_up-210	chr13	78324526	78325868	+	0	NA	Intergenic	Intergenic	-126215	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding
h3k4me3_ko_wt_down-89	chr7	102686612	102687704	+	0	NA	5' UTR (NM_198012, exon 1 of 7)	5' UTR (NM_198012, exon 1 of 7)	169	NM_198012	101700	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding
h3k27me3_ko_wt_up-37	chr1	188454194	188456151	+	0	NA	intron (NM_021408, intron 19 of 70)	intron (NM_021408, intron 19 of 70)	192334	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin	Usher syndrome 2A (autosomal recessive, mild)	protein-coding
h3k4me3_het_wt_down-11	chr17	6429925	6431324	+	0	NA	intron (NM_009342, intron 1 of 4)	intron (NM_009342, intron 1 of 4)	512	NM_009342	21648	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding
h3k4me3_ko_wt_down-99	chr8	30915646	30916632	+	0	NA	Intergenic	Intergenic	-173523	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding
h3k27me3_ko_wt_down-107	chr3	126610421	126613786	+	0	NA	intron (NM_001293665, intron 2 of 19)	intron (NM_001293665, intron 2 of 19)	15152	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27ac_ko_wt_down-34	chr1	194578080	194578730	+	0	NA	Intergenic	Intergenic	-41424	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
h3k4me3_het_wt_up-27	chr9	24541952	24542240	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	-38956	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
h3k4me3_ko_wt_up-501	chr17	13550763	13551093	+	0	NA	intron (NR_045436, intron 1 of 4)	(CTGTG)n|Simple_repeat|Simple_repeat	3166	NR_045436	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA
h3k27ac_ko_wt_down-211	chr10	101680713	101682746	+	0	NA	5' UTR (NM_001205098, exon 1 of 8)	5' UTR (NM_001205098, exon 1 of 8)	242	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
h3k27me3_ko_wt_up-334	chr14	123151269	123160477	+	0	NA	Intergenic	L2|LINE|L2	-12630	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k4me3_ko_wt_down-189	chr17	25727153	25728315	+	0	NA	promoter-TSS (NM_028009)	promoter-TSS (NM_028009)	-17	NM_028009	106707	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding
h3k27ac_ko_wt_down-284	chr14	114773895	114775315	+	0	NA	Intergenic	B1F|SINE|Alu	-57360	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
h3k4me3_ko_wt_down-31	chr3	82140931	82146256	+	0	NA	intron (NM_021896, intron 1 of 8)	L1MA4A|LINE|L1	2284	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding
h3k27me3_ko_wt_down-92	chr3	6895080	6899125	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-276659	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding
h3k4me3_ko_wt_up-527	chr17	87795516	87798848	+	0	NA	exon (NM_199251, exon 1 of 2)	exon (NM_199251, exon 1 of 2)	812	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding
h3k27me3_ko_wt_down-328	chr8	64316396	64318467	+	0	NA	Intergenic	Intergenic	-111438	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding
h3k27me3_ko_wt_up-242	chr10	73819863	73823088	+	0	NA	promoter-TSS (NM_001142738)	promoter-TSS (NM_001142738)	-392	NM_023115	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
h3k4me3_ko_wt_up-77	chr2	115857647	115859295	+	0	NA	Intergenic	Intergenic	206150	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
h3k27me3_ko_wt_down-330	chr8	72092313	72094777	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-6217	NM_146539	258532	Mm.377557	NM_146539	ENSMUSG00000061561	Olfr373	MOR282-2	olfactory receptor 373	protein-coding
h3k27me3_ko_wt_up-147	chr6	23202155	23204376	+	0	NA	Intergenic	Intergenic	44999	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding
h3k27ac_ko_wt_down-7	chr1	28102117	28103167	+	0	NA	Intergenic	Intergenic	677610	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding
h3k27me3_ko_wt_down-233	chr5	77002349	77003745	+	0	NA	Intergenic	Intergenic	-1008	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding
h3k27me3_ko_wt_up-347	chr15	13091013	13092275	+	0	NA	intron (NM_007666, intron 2 of 11)	intron (NM_007666, intron 2 of 11)	82031	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
h3k4me3_ko_wt_up-448	chr14	66123965	66124607	+	0	NA	5' UTR (NM_001271402, exon 1 of 19)	5' UTR (NM_001271402, exon 1 of 19)	236	NM_001271402	13850	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding
h3k4me3_ko_wt_up-241	chr7	18402319	18404179	+	0	NA	Intergenic	Intergenic	28806	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding
h3k4me3_ko_wt_up-494	chr16	92399245	92400595	+	0	NA	exon (NM_019466, exon 1 of 4)	exon (NM_019466, exon 1 of 4)	158	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
h3k4me3_ko_wt_down-186	chr17	15207451	15209085	+	0	NA	Intergenic	Intergenic	32515	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA
h3k27me3_ko_wt_down-183	chr4	89353565	89358197	+	0	NA	intron (NR_132431, intron 2 of 9)	intron (NR_132431, intron 2 of 9)	-44849	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding
h3k27me3_ko_wt_up-204	chr8	79384158	79385092	+	0	NA	intron (NM_008539, intron 1 of 6)	intron (NM_008539, intron 1 of 6)	14843	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
h3k27me3_ko_wt_up-134	chr5	90623094	90626369	+	0	NA	intron (NM_001310656, intron 2 of 10)	intron (NM_001310656, intron 2 of 10)	15796	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
h3k27ac_ko_wt_down-314	chr17	63209664	63211008	+	0	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	102637	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
h3k4me3_ko_wt_down-28	chr2	170319038	170320118	+	0	NA	Intergenic	Intergenic	-36783	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA
h3k4me3_ko_wt_up-449	chr14	67188289	67189176	+	0	NA	Intergenic	Intergenic	-44560	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding
h3k27ac_ko_wt_up-70	chr3	9577964	9578517	+	0	NA	intron (NM_133218, intron 1 of 8)	intron (NM_133218, intron 1 of 8)	31845	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding
h3k27ac_ko_wt_down-182	chr9	40364466	40364751	+	0	NA	intron (NM_172768, intron 2 of 19)	intron (NM_172768, intron 2 of 19)	31136	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA
h3k27ac_ko_wt_down-47	chr2	96235499	96236000	+	0	NA	Intergenic	Intergenic	-82420	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27me3_ko_wt_up-17	chr1	90661154	90664145	+	0	NA	Intergenic	Intergenic	59224	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)	protein-coding
h3k27me3_ko_wt_up-454	chrX	94076757	94078841	+	0	NA	3' UTR (NM_001044386, exon 9 of 9)	3' UTR (NM_001044386, exon 9 of 9)	45608	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_down-64	chr2	57121303	57122809	+	0	NA	intron (NM_001139509, intron 1 of 7)	intron (NM_001139509, intron 1 of 7)	1947	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
h3k4me3_ko_wt_up-180	chr5	34513214	34514541	+	0	NA	exon (NM_139064, exon 1 of 6)	exon (NM_139064, exon 1 of 6)	102	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding
h3k27ac_ko_wt_up-230	chr14	90806832	90807857	+	0	NA	Intergenic	Intergenic	680453	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
h3k27me3_ko_wt_up-440	chrX	12083121	12085415	+	0	NA	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	-3715	NM_175046	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k4me3_ko_wt_up-26	chr1	155413775	155417667	+	0	NA	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1723	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding
h3k4me3_ko_wt_up-536	chr18	37755769	37756765	+	0	NA	exon (NM_033594, exon 1 of 4)	exon (NM_033594, exon 1 of 4)	494	NM_033594	93723	Mm.247203	NM_033594	ENSMUSG00000023036	Pcdhga11	-	protocadherin gamma subfamily A, 11	protein-coding
h3k4me3_ko_wt_up-162	chr4	133038232	133039819	+	0	NA	intron (NM_146155, intron 2 of 6)	CpG	27519	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding
h3k4me3_ko_wt_up-453	chr14	100477419	100478383	+	0	NA	Intergenic	Intergenic	-328105	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27me3_ko_wt_down-270	chr6	141079094	141081419	+	0	NA	Intergenic	L1MEf|LINE|L1	-169013	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
h3k27me3_ko_wt_up-439	chrX	12081463	12082655	+	0	NA	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	-1506	NM_175046	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_up-75	chr2	115717291	115717938	+	0	NA	intron (NM_001145898, intron 10 of 10)	intron (NM_001145898, intron 10 of 10)	78889	NR_035476	100316703		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA
h3k4me3_ko_wt_up-346	chr11	5877484	5878860	+	0	NA	promoter-TSS (NM_008894)	promoter-TSS (NM_008894)	84	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding
h3k27ac_ko_wt_down-305	chr16	63906404	63907957	+	0	NA	Intergenic	Intergenic	-43023	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k4me3_ko_wt_down-125	chr10	78787049	78788180	+	0	NA	intron (NM_009200, intron 1 of 9)	intron (NM_009200, intron 1 of 9)	7118	NM_009200	20513	Mm.6257	NM_009200	ENSMUSG00000005357	Slc1a6	EAAT4	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	protein-coding
h3k4me3_het_wt_up-36	chr17	6270444	6271208	+	0	NA	intron (NM_001033178, intron 1 of 16)	CpG	356	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding
h3k4me3_ko_wt_up-263	chr7	121981071	121982485	+	0	NA	promoter-TSS (NM_001033318)	promoter-TSS (NM_001033318)	-85	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding
h3k4me3_ko_wt_down-150	chr12	108422351	108426495	+	0	NA	intron (NM_001043335, intron 1 of 21)	intron (NM_001043335, intron 1 of 21)	1607	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding
h3k27me3_ko_wt_down-360	chr10	104455620	104456630	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	168856	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
h3k27ac_ko_wt_down-100	chr5	8289663	8290811	+	0	NA	intron (NM_001310440, intron 3 of 30)	intron (NM_001310440, intron 3 of 30)	77923	NM_001007220	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding
h3k4me3_ko_wt_up-370	chr11	87578062	87579156	+	0	NA	intron (NM_001284398, intron 1 of 10)	CpG	220	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding
h3k27me3_ko_wt_up-491	chrX	103736675	103739220	+	0	NA	intron (NM_009197, intron 1 of 5)	intron (NM_009197, intron 1 of 5)	84041	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding
h3k27ac_ko_wt_up-86	chr3	114904087	114905601	+	0	NA	intron (NM_001286750, intron 1 of 5)	intron (NM_001286750, intron 1 of 5)	209	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding
h3k27ac_ko_wt_up-41	chr2	77933736	77934364	+	0	NA	intron (NM_001290740, intron 2 of 19)	intron (NM_001290740, intron 2 of 19)	12306	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-26	chr1	176834746	176836548	+	0	NA	non-coding (NR_037996, exon 1 of 1)	non-coding (NR_037996, exon 1 of 1)	486	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
h3k27ac_ko_wt_down-208	chr10	97404203	97404809	+	0	NA	Intergenic	Intergenic	-18972	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
h3k27me3_ko_wt_up-159	chr6	49921012	49922094	+	0	NA	Intergenic	Intergenic	98843	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding
h3k27me3_ko_wt_down-293	chr8	17625325	17627310	+	0	NA	Intergenic	Lx7|LINE|L1	-90932	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
h3k27me3_ko_wt_up-481	chrX	103362434	103363791	+	0	NA	intron (NM_009767, intron 1 of 5)	intron (NM_009767, intron 1 of 5)	6636	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx	cysteine-rich hydrophobic domain 1	protein-coding
h3k4me3_ko_wt_up-45	chr2	19661087	19661702	+	0	NA	TTS (NM_027715)	TTS (NM_027715)	3332	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding
h3k27me3_ko_wt_down-30	chr1	78508857	78513450	+	0	NA	promoter-TSS (NM_026713)	promoter-TSS (NM_026713)	93	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding
h3k27me3_ko_wt_up-119	chr4	86065375	86069754	+	0	NA	intron (NM_029967, intron 1 of 27)	intron (NM_029967, intron 1 of 27)	13649	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding
h3k27ac_ko_wt_up-248	chr16	24972819	24973556	+	0	NA	intron (NM_001145952, intron 10 of 11)	intron (NM_001145952, intron 10 of 11)	-86452	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
h3k27me3_ko_wt_up-67	chr2	96066095	96067939	+	0	NA	Intergenic	Intergenic	-251152	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_up-578	chrX	60890600	60894791	+	0	NA	exon (NM_009237, exon 1 of 1)	exon (NM_009237, exon 1 of 1)	735	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding
h3k27me3_ko_wt_down-8	chr1	25770494	25780126	+	0	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	54397	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding
h3k27me3_ko_wt_down-362	chr10	105421496	105425451	+	0	NA	intron (NM_177368, intron 1 of 11)	MamTip2|DNA|hAT-Tip100	151006	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
h3k4me3_ko_wt_up-579	chrX	73410871	73411759	+	0	NA	promoter-TSS (NM_001310531)	promoter-TSS (NM_001310531)	219	NM_009566	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding
h3k27ac_ko_wt_up-249	chr16	26105500	26106111	+	0	NA	promoter-TSS (NM_173379)	promoter-TSS (NM_173379)	-21	NM_173379	210530	Mm.326869	NM_173379		P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding
h3k27me3_ko_wt_down-366	chr10	115769481	115774419	+	0	NA	Intergenic	Intergenic	-45334	NM_146010	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding
h3k4me3_ko_wt_up-557	chr19	5741436	5742703	+	0	NA	5' UTR (NM_008520, exon 2 of 28)	5' UTR (NM_008520, exon 2 of 28)	1165	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding
h3k27me3_ko_wt_up-126	chr4	154169248	154172532	+	0	NA	5' UTR (NM_001162977, exon 1 of 37)	5' UTR (NM_001162977, exon 1 of 37)	177	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding
h3k27me3_ko_wt_down-276	chr7	51605794	51606486	+	0	NA	Intergenic	Intergenic	-15690	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding
h3k27ac_ko_wt_down-169	chr8	54269408	54271468	+	0	NA	Intergenic	Intergenic	192906	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
h3k27me3_ko_wt_up-71	chr2	105472427	105473829	+	0	NA	Intergenic	Intergenic	-73809	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
h3k27me3_het_wt_down-2	chr3	90712027	90715899	+	0	NA	Intergenic	L1VL4|LINE|L1	-12943	NM_207263	384997	Mm.316644	NM_207263	ENSMUSG00000042250	Pglyrp4	Gm1478|Gm413	peptidoglycan recognition protein 4	protein-coding
h3k27ac_ko_wt_down-299	chr16	35164190	35166018	+	0	NA	intron (NM_001012765, intron 1 of 20)	intron (NM_001012765, intron 1 of 20)	9468	NM_001012765	224129	Mm.41137	NM_001012765		Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding
h3k27me3_ko_wt_down-548	chr16	83684305	83688464	+	0	NA	Intergenic	MTD-int|LTR|ERVL-MaLR	-684759	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k4me3_ko_wt_up	chr1	13494706	13495292	+	0	NA	Intergenic	Intergenic	94911	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding
h3k27me3_ko_wt_down-511	chr15	3584087	3589125	+	0	NA	Intergenic	L2b|LINE|L2	-3254	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
h3k27me3_ko_wt_up-228	chr10	6302634	6303509	+	0	NA	Intergenic	Intergenic	-380671	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding
h3k4me3_ko_wt_down-194	chr17	80391574	80392225	+	0	NA	Intergenic	Intergenic	-18357	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA
h3k27me3_ko_wt_down-272	chr7	37598889	37601925	+	0	NA	intron (NM_172385, intron 3 of 5)	intron (NM_172385, intron 3 of 5)	169345	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
h3k27me3_ko_wt_down-221	chr5	48057106	48059341	+	0	NA	intron (NR_111900, intron 4 of 35)	intron (NR_111900, intron 4 of 35)	75068	NM_001291227	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-301	chr13	54051787	54055946	+	0	NA	exon (NM_010076, exon 2 of 2)	exon (NM_010076, exon 2 of 2)	914	NM_001291801	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding
h3k4me3_ko_wt_up-174	chr4	155397572	155398506	+	0	NA	promoter-TSS (NM_008072)	promoter-TSS (NM_008072)	30	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding
h3k27ac_ko_wt_up-46	chr2	78020402	78022065	+	0	NA	Intergenic	Intergenic	-29944	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_up-414	chr18	44767419	44768245	+	0	NA	intron (NM_001085373, intron 1 of 18)	(TC)n|Simple_repeat|Simple_repeat	44350	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding
h3k27me3_ko_wt_down-479	chr14	47445359	47449418	+	0	NA	Intergenic	Lx7|LINE|L1	-25173	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
h3k27me3_ko_wt_down-485	chr14	52040357	52044513	+	0	NA	Intergenic	Intergenic	-6326	NM_001001808	258420	Mm.377946	NM_001001808	ENSMUSG00000044286	Olfr221	MOR205-1|MOR205-2|Olfr1514|Olfr221-ps1	olfactory receptor 221	protein-coding
h3k4me3_ko_wt_up-430	chr13	100892394	100893099	+	0	NA	Intergenic	Intergenic	-59319	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding
h3k27ac_ko_wt_down-293	chr15	42676044	42677117	+	0	NA	5' UTR (NM_001286062, exon 1 of 9)	5' UTR (NM_001286062, exon 1 of 9)	397	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding
h3k4me3_ko_wt_up-85	chr2	136057844	136059596	+	0	NA	intron (NM_029530, intron 1 of 5)	intron (NM_029530, intron 1 of 5)	793	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding
h3k4me3_ko_wt_up-213	chr6	29506857	29508348	+	0	NA	intron (NM_001029985, intron 1 of 37)	intron (NM_001029985, intron 1 of 37)	350	NM_001029985	333088	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding
h3k27ac_ko_wt_down-163	chr7	91785097	91786514	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-276589	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-303	chr9	37255203	37256011	+	0	NA	5' UTR (NM_020258, exon 1 of 18)	5' UTR (NM_020258, exon 1 of 18)	131	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding
h3k27ac_ko_wt_up-253	chr16	64054253	64055081	+	0	NA	Intergenic	Intergenic	-190510	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k4me3_ko_wt_up-220	chr6	58595872	58598096	+	0	NA	5' UTR (NM_011920, exon 1 of 16)	5' UTR (NM_011920, exon 1 of 16)	312	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding
h3k4me3_ko_wt_down-6	chr1	60860845	60861723	+	0	NA	Intergenic	Intergenic	-47741	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding
h3k27ac_ko_wt_up-81	chr3	90388996	90390333	+	0	NA	exon (NM_011988, exon 1 of 10)	exon (NM_011988, exon 1 of 10)	274	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding
h3k27me3_ko_wt_down-58	chr2	24573240	24577370	+	0	NA	Intergenic	Intergenic	-99706	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding
h3k4me3_ko_wt_up-112	chr3	66295019	66296717	+	0	NA	intron (NM_145820, intron 1 of 13)	intron (NM_145820, intron 1 of 13)	969	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding
h3k27me3_ko_wt_down-114	chr3	126765989	126768150	+	0	NA	intron (NM_001293665, intron 4 of 19)	intron (NM_001293665, intron 4 of 19)	170118	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27ac_ko_wt_up-152	chr8	23414367	23415274	+	0	NA	intron (NM_013834, intron 1 of 2)	intron (NM_013834, intron 1 of 2)	3318	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding
h3k4me3_ko_wt_up-384	chr11	103649558	103651407	+	0	NA	TTS (NM_001033212)	TTS (NM_001033212)	973	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding
h3k27me3_ko_wt_down-458	chr13	74464967	74470763	+	0	NA	Intergenic	L1_Mur1|LINE|L1	26085	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding
h3k27ac_ko_wt_up-25	chr1	131078425	131079639	+	0	NA	intron (NM_008551, intron 1 of 9)	intron (NM_008551, intron 1 of 9)	18811	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding
h3k4me3_ko_wt_down-138	chr11	76621962	76623951	+	0	NA	Intergenic	CpG	-45217	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding
h3k4me3_ko_wt_up-245	chr7	34570318	34570871	+	0	NA	Intergenic	Intergenic	82247	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding
h3k27me3_ko_wt_down-577	chr17	69638810	69639460	+	0	NA	Intergenic	Intergenic	199809	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
h3k4me3_ko_wt_up-90	chr2	167014679	167016023	+	0	NA	promoter-TSS (NM_153065)	promoter-TSS (NM_153065)	38	NM_153065	228889	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding
h3k4me3_ko_wt_up-21	chr1	126737442	126738630	+	0	NA	intron (NM_176957, intron 1 of 12)	intron (NM_176957, intron 1 of 12)	92596	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding
h3k4me3_ko_wt_up-30	chr1	165844420	165845620	+	0	NA	intron (NR_103716, intron 1 of 8)	CpG	56339	NR_103716	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding
h3k27me3_ko_wt_down-255	chr6	29736598	29737517	+	0	NA	intron (NM_176996, intron 1 of 11)	intron (NM_176996, intron 1 of 11)	1560	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding
h3k4me3_ko_wt_up-47	chr2	22744083	22745041	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29765	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding
h3k27me3_ko_wt_down-505	chr14	101378213	101379610	+	0	NA	Intergenic	Intergenic	-178842	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
h3k27ac_ko_wt_up-164	chr9	26733937	26736277	+	0	NA	intron (NM_001310766, intron 1 of 6)	intron (NM_001310766, intron 1 of 6)	1299	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding
h3k4me3_ko_wt_up-350	chr11	19713320	19714418	+	0	NA	Intergenic	Intergenic	-210573	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
h3k27me3_ko_wt_up-425	chr19	10648252	10648943	+	0	NA	promoter-TSS (NR_045316)	promoter-TSS (NR_045316)	-544	NR_045316	75096	Mm.399287	NR_045316		4930524O05Rik	-	RIKEN cDNA 4930524O05 gene	ncRNA
h3k4me3_ko_wt_up-506	chr17	31636338	31637156	+	0	NA	intron (NM_144855, intron 1 of 16)	CpG	458	NM_178224	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding
h3k27ac_ko_wt_up-200	chr12	32567708	32568232	+	0	NA	Intergenic	Intergenic	189181	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding
h3k27me3_ko_wt_up-471	chrX	94325446	94326359	+	0	NA	Intergenic	L1M2|LINE|L1	-41208	NM_026673	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding
h3k27me3_ko_wt_down-120	chr3	127701022	127701788	+	0	NA	intron (NM_027808, intron 3 of 13)	intron (NM_027808, intron 3 of 13)	68260	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding
h3k27me3_ko_wt_up-55	chr2	77970226	77977376	+	0	NA	Intergenic	Lx7|LINE|L1	-27445	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-138	chr3	156040390	156045423	+	0	NA	Intergenic	Intergenic	66552	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA
h3k4me3_ko_wt_up-473	chr15	102376404	102377347	+	0	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-10604	NM_130458	170574	Mm.263284	NM_130458		Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding
h3k27me3_ko_wt_down-40	chr1	107287480	107289204	+	0	NA	Intergenic	Intergenic	-9971	NM_201363	381286	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding
h3k27ac_ko_wt_up-92	chr4	9305972	9306505	+	0	NA	intron (NM_028940, intron 2 of 5)	intron (NM_028940, intron 2 of 5)	36921	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding
h3k27me3_ko_wt_down-460	chr13	95249039	95251610	+	0	NA	promoter-TSS (NM_172263)	promoter-TSS (NM_172263)	-20	NM_172263	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding
h3k27ac_ko_wt_up-32	chr2	66904841	66905370	+	0	NA	Intergenic	L2a|LINE|L2	-120195	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding
h3k27me3_ko_wt_down-288	chr7	114868494	114871180	+	0	NA	Intergenic	L1MEd|LINE|L1	-78813	NR_040317	101786	Mm.395157	NR_040317		A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA
h3k4me3_ko_wt_down-165	chr13	113660705	113663752	+	0	NA	TTS (NM_019960)	TTS (NM_019960)	1448	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding
h3k4me3_ko_wt_up-565	chr19	40659591	40661144	+	0	NA	intron (NM_009848, intron 1 of 9)	intron (NM_009848, intron 1 of 9)	597	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding
h3k27me3_ko_wt_up-19	chr1	121095283	121100580	+	0	NA	intron (NR_110450, intron 1 of 2)	intron (NR_110450, intron 1 of 2)	10526	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
h3k27me3_ko_wt_up-203	chr8	68880168	68882311	+	0	NA	intron (NM_008509, intron 1 of 9)	CpG	684	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding
h3k27ac_ko_wt_down-48	chr2	98842642	98843441	+	0	NA	Intergenic	Intergenic	1375384	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27me3_ko_wt_up-133	chr5	58179834	58181291	+	0	NA	Intergenic	Intergenic	272436	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA
h3k4me3_het_wt_up-11	chr2	154676913	154678066	+	0	NA	intron (NM_029362, intron 1 of 4)	intron (NM_029362, intron 1 of 4)	20463	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding
h3k27me3_ko_wt_up-18	chr1	119422279	119423829	+	0	NA	promoter-TSS (NM_008381)	promoter-TSS (NM_008381)	-806	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding
h3k27me3_ko_wt_down-198	chr4	100735359	100736863	+	0	NA	Intergenic	Intergenic	-40568	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding
h3k27ac_ko_wt_down-172	chr8	65587682	65589311	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-29544	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
h3k4me3_ko_wt_down-27	chr2	164496899	164498307	+	0	NA	promoter-TSS (NM_133779)	promoter-TSS (NM_133779)	78	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding
h3k27me3_ko_wt_up-453	chrX	94059549	94061029	+	0	NA	Intergenic	B3A|SINE|B2	63118	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_down-24	chr1	68924339	68927431	+	0	NA	intron (NM_010154, intron 1 of 26)	intron (NM_010154, intron 1 of 26)	182174	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
h3k4me3_ko_wt_up-447	chr14	65357812	65359729	+	0	NA	promoter-TSS (NM_199029)	promoter-TSS (NM_199029)	94	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding
h3k4me3_ko_wt_down-176	chr15	99650821	99652152	+	0	NA	intron (NM_012025, intron 1 of 17)	CpG	170	NM_012025	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding
h3k27ac_ko_wt_up-73	chr3	21633877	21634213	+	0	NA	Intergenic	Intergenic	-442607	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding
h3k4me3_ko_wt_up-511	chr17	35379644	35380365	+	0	NA	exon (NM_001143689, exon 2 of 6)	exon (NM_001143689, exon 2 of 6)	387	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding
h3k27me3_het_wt_down-18	chrX	94243001	94245265	+	0	NA	intron (NM_153165, intron 3 of 4)	intron (NM_153165, intron 3 of 4)	9203	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27me3_ko_wt_up-348	chr15	13095681	13097241	+	0	NA	intron (NM_007666, intron 1 of 11)	MamRep434|DNA|TcMar-Tigger	77214	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding
h3k27ac_ko_wt_down-69	chr3	65612339	65613158	+	0	NA	Intergenic	Intergenic	-46540	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA
h3k27ac_ko_wt_down-210	chr10	98933068	98933646	+	0	NA	intron (NM_026482, intron 1 of 20)	Kanga11a|DNA|TcMar-Tc2	18205	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
h3k27ac_ko_wt_up-27	chr1	159148147	159149065	+	0	NA	Intergenic	Intergenic	-83720	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding
h3k27ac_ko_wt_down-123	chr5	85636347	85638114	+	0	NA	Intergenic	Intergenic	428353	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
h3k4me3_het_wt_up-43	chr18	69562932	69565734	+	0	NA	intron (NM_001083967, intron 7 of 19)	intron (NM_001083967, intron 7 of 19)	218612	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27me3_ko_wt_down-117	chr3	126811729	126815039	+	0	NA	intron (NM_001293665, intron 15 of 19)	intron (NM_001293665, intron 15 of 19)	130002	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
h3k4me3_ko_wt_up-54	chr2	33467518	33468918	+	0	NA	intron (NM_027947, intron 1 of 3)	CpG	314	NM_001025594	71834	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding
h3k4me3_ko_wt_up-333	chr10	80164212	80166106	+	0	NA	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-2682	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding
h3k4me3_ko_wt_up-515	chr17	43157622	43158603	+	0	NA	non-coding (NR_045155, exon 1 of 6)	non-coding (NR_045155, exon 1 of 6)	179	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA
h3k4me3_ko_wt_up-400	chr12	91683687	91684881	+	0	NA	intron (NM_175367, intron 4 of 6)	intron (NM_175367, intron 4 of 6)	-93797	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding
h3k4me3_het_wt_down-10	chr15	5241722	5245120	+	0	NA	intron (NM_008965, intron 1 of 2)	intron (NM_008965, intron 1 of 2)	766	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding
h3k27me3_ko_wt_up-413	chr18	44659714	44662102	+	0	NA	promoter-TSS (NR_026853)	promoter-TSS (NR_026853)	-757	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA
h3k27ac_ko_wt_up-172	chr10	19591900	19592845	+	0	NA	intron (NM_010511, intron 1 of 6)	intron (NM_010511, intron 1 of 6)	414	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding
h3k27me3_ko_wt_down-574	chr17	62344414	62355644	+	0	NA	Intergenic	Lx7|LINE|L1	531288	NM_207654	13640	Mm.7978	NM_010109		Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding
h3k27me3_ko_wt_down-379	chr11	19264726	19266575	+	0	NA	Intergenic	Intergenic	200375	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k27ac_ko_wt_down-118	chr5	64701434	64702348	+	0	NA	Intergenic	LTR33A_|LTR|ERVL	-91192	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA
h3k27me3_ko_wt_down-385	chr11	39717153	39720759	+	0	NA	Intergenic	Intergenic	-328731	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
h3k4me3_het_wt_up-4	chr2	22744083	22745041	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-29765	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding
h3k27ac_ko_wt_up-273	chr18	43642002	43643543	+	0	NA	intron (NM_001163637, intron 1 of 21)	intron (NM_001163637, intron 1 of 21)	45001	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding
h3k27me3_ko_wt_down-358	chr10	104391362	104395423	+	0	NA	Intergenic	Lx9|LINE|L1	106123	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
h3k4me3_ko_wt_up-543	chr18	54820908	54821823	+	0	NA	Intergenic	Intergenic	168815	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
h3k4me3_ko_wt_up-33	chr1	171085264	171086440	+	0	NA	Intergenic	CpG	-21200	NR_106103	102466998		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA
h3k27me3_ko_wt_down-269	chr6	141047825	141056549	+	0	NA	Intergenic	Intergenic	-197082	NM_018779	54611	Mm.103728	NM_018779		Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding
h3k4me3_het_wt_up-15	chr2	177758964	177759881	+	0	NA	intron (NM_001243903, intron 1 of 4)	RMER17B|LTR|ERVK	134	NM_001243903	626802	Mm.386029	NM_001243903		Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding
h3k4me3_ko_wt_up-93	chr2	169929822	169930156	+	0	NA	Intergenic	Intergenic	33198	NR_131974	446211	Mm.266854	NR_131974		AY702102	STDP1	cDNA sequence AY702102	ncRNA
h3k4me3_ko_wt_up-87	chr2	156839709	156841814	+	0	NA	intron (NM_001291124, intron 1 of 3)	CpG	754	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding
h3k4me3_ko_wt_down-148	chr12	105784194	105786083	+	0	NA	intron (NM_011112, intron 1 of 21)	CpG	436	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding
h3k27me3_ko_wt_up-369	chr15	93519772	93520179	+	0	NA	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	75916	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
h3k27ac_ko_wt_up-114	chr5	38206492	38206932	+	0	NA	intron (NM_029162, intron 4 of 7)	intron (NM_029162, intron 4 of 7)	13716	NM_029162	75079	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding
h3k4me3_ko_wt_up-154	chr4	99459302	99460044	+	0	NA	Intergenic	Intergenic	-196626	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding
h3k27me3_ko_wt_down-95	chr3	27849855	27852258	+	0	NA	Intergenic	Lx4A|LINE|L1	45312	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding
h3k27me3_ko_wt_down-122	chr3	143414568	143421076	+	0	NA	Intergenic	Intergenic	174767	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA
h3k27me3_ko_wt_down-171	chr4	67582731	67589737	+	0	NA	Intergenic	Intergenic	758683	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding
h3k27me3_ko_wt_up-122	chr4	148402140	148408041	+	0	NA	Intergenic	Intergenic	39661	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding
h3k27me3_ko_wt_down-466	chr13	114481120	114482337	+	0	NA	Intergenic	Intergenic	-22777	NM_001301375	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding
h3k4me3_ko_wt_up-19	chr1	105843321	105844865	+	0	NA	intron (NM_009399, intron 9 of 9)	intron (NM_009399, intron 9 of 9)	63370	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding
h3k4me3_ko_wt_up-561	chr19	8989191	8990125	+	0	NA	intron (NM_009643, intron 1 of 4)	CpG	374	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding
h3k27me3_ko_wt_up-227	chr9	118607262	118609900	+	0	NA	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	1872	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding
h3k27me3_ko_wt_up-51	chr2	60282261	60285153	+	0	NA	intron (NM_001290660, intron 1 of 5)	intron (NM_001290660, intron 1 of 5)	777	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding
h3k4me3_ko_wt_up-292	chr8	109232930	109233562	+	0	NA	intron (NR_126329, intron 7 of 9)	intron (NR_126329, intron 7 of 9)	107662	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
h3k27me3_ko_wt_down-462	chr13	103917967	103920040	+	0	NA	intron (NM_001289473, intron 1 of 25)	intron (NM_001289473, intron 1 of 25)	1583	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbb2ip	1700028E05Rik|Erbin|mKIAA1225	Erbb2 interacting protein	protein-coding
h3k27me3_ko_wt_down-126	chr3	145656946	145659499	+	0	NA	Intergenic	Intergenic	-8237	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
h3k27me3_ko_wt_up-68	chr2	101574650	101578890	+	0	NA	intron (NM_026592, intron 5 of 6)	intron (NM_026592, intron 5 of 6)	-47978	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k27ac_ko_wt_up-247	chr16	21694064	21695819	+	0	NA	promoter-TSS (NM_001001881)	promoter-TSS (NM_001001881)	-276	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding
h3k4me3_ko_wt_up-193	chr5	120409410	120410261	+	0	NA	Intergenic	Intergenic	-22051	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding
h3k4me3_ko_wt_up-577	chrX	52743643	52745079	+	0	NA	non-coding (NR_003188, exon 1 of 1)	non-coding (NR_003188, exon 1 of 1)	232	NR_003188	751866	Mm.381916	NR_003188		Kis2	Kis2-T1|Kis2-T2|Kis2-T3|Kis2-T4|Kis2-T5|Platr24|Xpcl1	Kaplan integration site 2	ncRNA
h3k27me3_ko_wt_down-621	chrX	133684136	133687107	+	0	NA	exon (NM_001105246, exon 1 of 5)	exon (NM_001105246, exon 1 of 5)	3372	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding
h3k4me3_ko_wt_up-72	chr2	102407243	102408223	+	0	NA	Intergenic	Intergenic	-6833	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding
h3k4me3_ko_wt_up-559	chr19	6530602	6532668	+	0	NA	exon (NM_001205234, exon 23 of 23)	exon (NM_001205234, exon 23 of 23)	11435	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding
h3k27me3_ko_wt_up-69	chr2	102258374	102259844	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-72649	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding
h3k27ac_ko_wt_down-129	chr6	25867128	25868324	+	0	NA	Intergenic	Intergenic	-58500	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding
h3k4me3_ko_wt_up-558	chr19	5963593	5964784	+	0	NA	promoter-TSS (NM_001164057)	promoter-TSS (NM_001164057)	18	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding
h3k27me3_ko_wt_down-7	chr1	20474420	20478855	+	0	NA	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	120183	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
h3k27me3_het_wt_up-7	chr2	77988580	77995791	+	0	NA	Intergenic	Intergenic	-45829	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_down-46	chr4	108406037	108407314	+	0	NA	promoter-TSS (NM_024198)	promoter-TSS (NM_024198)	38	NM_024198	67305	Mm.20164	NM_024198		Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding
h3k27ac_ko_wt_down-22	chr1	100843456	100844022	+	0	NA	Intergenic	Lx|LINE|L1	-312029	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27me3_ko_wt_up-279	chr12	53905331	53908094	+	0	NA	intron (NM_013780, intron 5 of 11)	intron (NM_013780, intron 5 of 11)	297162	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
h3k27me3_ko_wt_up-464	chrX	94243001	94245265	+	0	NA	intron (NM_153165, intron 3 of 4)	intron (NM_153165, intron 3 of 4)	9203	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27ac_ko_wt_down-126	chr6	16999633	16999846	+	0	NA	Intergenic	Intergenic	-65410	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding
h3k4me3_het_wt_down-2	chr5	113490233	113493510	+	0	NA	Intergenic	Intergenic	-58549	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding
h3k27me3_ko_wt_down-31	chr1	95240830	95242029	+	0	NA	Intergenic	Intergenic	-72199	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
h3k27me3_ko_wt_down-189	chr4	94114609	94116131	+	0	NA	Intergenic	RMER12|LTR|ERVK	441426	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27me3_ko_wt_down-496	chr14	98912155	98916373	+	0	NA	Intergenic	Intergenic	131872	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding
h3k27me3_ko_wt_down-175	chr4	70811198	70812881	+	0	NA	Intergenic	Intergenic	-277111	NM_172694	230316	Mm.251188	NM_172694		Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding
h3k27ac_ko_wt_down-137	chr6	46887957	46888364	+	0	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-356236	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k4me3_ko_wt_up-6	chr1	41274732	41276171	+	0	NA	Intergenic	Intergenic	-94199	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
h3k27me3_ko_wt_up-503	chrX	140014795	140016298	+	0	NA	intron (NM_001081668, intron 8 of 8)	intron (NM_001081668, intron 8 of 8)	-16951	NM_153586	237073	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding
h3k27ac_ko_wt_up-76	chr3	37723218	37724770	+	0	NA	intron (NM_198657, intron 1 of 2)	intron (NM_198657, intron 1 of 2)	366	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
h3k4me3_ko_wt_down-122	chr10	63089636	63090420	+	0	NA	Intergenic	Intergenic	-10128	NM_016864	53404	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal homolog 7 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-302	chr16	45659370	45660132	+	0	NA	intron (NM_172455, intron 16 of 17)	intron (NM_172455, intron 16 of 17)	-5633	NM_145389	212998	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding
h3k27ac_ko_wt_down-101	chr5	13635908	13637230	+	0	NA	Intergenic	Intergenic	-155050	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
h3k27me3_ko_wt_down-239	chr5	89224594	89225621	+	0	NA	intron (NM_001197147, intron 21 of 25)	intron (NM_001197147, intron 21 of 25)	232791	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding
h3k27me3_ko_wt_down-492	chr14	95349405	95354475	+	0	NA	Intergenic	Intergenic	-529326	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding
h3k4me3_ko_wt_down-151	chr12	112509798	112511788	+	0	NA	exon (NM_178915, exon 1 of 4)	exon (NM_178915, exon 1 of 4)	367	NM_178915	104885	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding
h3k27me3_ko_wt_up-322	chr14	46143364	46146280	+	0	NA	Intergenic	Intergenic	60795	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo
h3k4me3_ko_wt_up-102	chr2	177497939	177498886	+	0	NA	intron (NR_036450, intron 1 of 4)	RMER17B|LTR|ERVK	186	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA
h3k27me3_ko_wt_down-299	chr8	26829254	26831981	+	0	NA	Intergenic	B3A|SINE|B2	-6194	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA
h3k27me3_ko_wt_down-432	chr12	91097428	91099375	+	0	NA	intron (NM_181815, intron 20 of 25)	intron (NM_181815, intron 20 of 25)	-11828	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA
h3k4me3_ko_wt_up-284	chr8	47241108	47244234	+	0	NA	intron (NM_175162, intron 1 of 4)	intron (NM_175162, intron 1 of 4)	46731	NM_001114311	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding
h3k27me3_ko_wt_up-25	chr1	171075891	171079103	+	0	NA	Intergenic	Intergenic	-12845	NR_106103	102466998		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA
h3k27me3_ko_wt_up-169	chr6	70909956	70912470	+	0	NA	Intergenic	Intergenic	7709	NM_028825	74221	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik	testis expressed 37	protein-coding
h3k27ac_ko_wt_up-134	chr6	128437079	128438132	+	0	NA	intron (NM_010219, intron 1 of 9)	intron (NM_010219, intron 1 of 9)	1026	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding
h3k27ac_ko_wt_up-95	chr4	15978533	15979311	+	0	NA	intron (NM_013752, intron 9 of 15)	intron (NM_013752, intron 9 of 15)	20955	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding
h3k27ac_ko_wt_up-35	chr2	75244124	75245542	+	0	NA	Intergenic	Intergenic	199346	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA
h3k27me3_ko_wt_down-436	chr12	107280996	107282389	+	0	NA	Intergenic	Intergenic	453796	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
h3k4me3_ko_wt_up-345	chr11	3192820	3193676	+	0	NA	intron (NM_030207, intron 1 of 32)	CpG	215	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding
h3k4me3_ko_wt_up-20	chr1	115684249	115688899	+	0	NA	intron (NM_001077425, intron 1 of 23)	intron (NM_001077425, intron 1 of 23)	1437	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
h3k4me3_het_wt_up-35	chr14	118436526	118437990	+	0	NA	Intergenic	CpG	71380	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA
h3k4me3_ko_wt_up-91	chr2	167924822	167925548	+	0	NA	Intergenic	Intergenic	-7142	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding
h3k4me3_ko_wt_up-31	chr1	166253769	166256670	+	0	NA	intron (NM_001164528, intron 1 of 9)	intron (NM_001164528, intron 1 of 9)	1080	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding
h3k27me3_ko_wt_up-76	chr2	140665621	140667733	+	0	NA	intron (NM_001172160, intron 1 of 2)	intron (NM_001172160, intron 1 of 2)	4799	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
h3k27me3_ko_wt_up-40	chr2	17860719	17862355	+	0	NA	Intergenic	Intergenic	-130469	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding
h3k27me3_ko_wt_down-381	chr11	19282220	19284174	+	0	NA	Intergenic	Intergenic	217922	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k4me3_ko_wt_up-203	chr5	139907292	139910244	+	0	NA	intron (NM_175522, intron 1 of 1)	CpG	825	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding
h3k4me3_ko_wt_up-313	chr9	100570214	100571393	+	0	NA	intron (NM_001101483, intron 1 of 1)	CpG	282	NM_001101483	245020	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding
h3k27ac_ko_wt_down-185	chr9	79608232	79608653	+	0	NA	exon (NM_001290308, exon 60 of 66)	exon (NM_001290308, exon 60 of 66)	-89140	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
h3k4me3_ko_wt_up-535	chr18	37497033	37497588	+	0	NA	exon (NM_053144, exon 1 of 1)	exon (NM_053144, exon 1 of 1)	312	NM_053144	93890	Mm.118311	NM_053144		Pcdhb19	Pcdhb11|PcdhbS	protocadherin beta 19	protein-coding
h3k4me3_ko_wt_up-320	chr10	18469556	18471331	+	0	NA	intron (NM_001163592, intron 1 of 7)	intron (NM_001163592, intron 1 of 7)	462	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding
h3k27ac_ko_wt_up-80	chr3	84296850	84297318	+	0	NA	intron (NM_001271726, intron 1 of 11)	intron (NM_001271726, intron 1 of 11)	7691	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding
h3k4me3_ko_wt_up-531	chr18	25486259	25487824	+	0	NA	intron (NM_001174074, intron 10 of 11)	CpG-6790	266942	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k4me3_ko_wt_up-529	chr18	11052390	11053026	+	0	NA	promoter-TSS (NR_105023)	promoter-TSS (NR_105023)	-141	NR_105022	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	-	RIKEN cDNA 1010001N08 gene	ncRNA
h3k27ac_ko_wt_up-71	chr3	18058217	18058957	+	0	NA	Intergenic	Intergenic	4262	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
h3k27me3_ko_wt_up-148	chr6	25903370	25906731	+	0	NA	Intergenic	MLT2B3|LTR|ERVL	-26376	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA
h3k27ac_ko_wt_down-33	chr1	177055052	177057085	+	0	NA	intron (NM_011785, intron 9 of 12)	intron (NM_011785, intron 9 of 12)	192699	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
h3k27ac_ko_wt_up-190	chr10	104965454	104965931	+	0	NA	Intergenic	MER125|DNA|DNA	608787	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
h3k27ac_ko_wt_down-9	chr1	30700185	30701830	+	0	NA	Intergenic	Intergenic	162249	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
h3k4me3_ko_wt_up-75	chr2	115514355	115515360	+	0	NA	Intergenic	Intergenic	-2656	NR_030712	100043232	Mm.240112	NR_030712	ENSMUSG00000085582	3110099E03Rik	-	RIKEN cDNA 3110099E03 gene	ncRNA
h3k4me3_ko_wt_up-528	chr18	9554668	9555394	+	0	NA	Intergenic	Intergenic	64438	NM_007593	26369	Mm.195831	NM_007593		Cetn1	caltractin	centrin 1	protein-coding
h3k4me3_ko_wt_down-179	chr16	54983476	54984075	+	0	NA	Intergenic	Intergenic	299462	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
h3k27ac_ko_wt_down-274	chr14	86684033	86685140	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	438616	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
h3k27ac_ko_wt_down-8	chr1	30590320	30591432	+	0	NA	Intergenic	Intergenic	272380	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
h3k4me3_ko_wt_down-79	chr7	6329944	6331902	+	0	NA	promoter-TSS (NM_001033249)	promoter-TSS (NM_001033249)	-489	NM_001033249	213011	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding
h3k27me3_ko_wt_down-428	chr12	89956535	89958157	+	0	NA	intron (NM_001252074, intron 1 of 6)	intron (NM_001252074, intron 1 of 6)	144863	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k4me3_ko_wt_down-207	chr19	60873734	60875137	+	0	NA	exon (NM_007452, exon 1 of 7)	exon (NM_007452, exon 1 of 7)	103	NM_007452	11757	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding
h3k27me3_ko_wt_up-38	chr1	188658817	188661491	+	0	NA	intron (NM_021408, intron 36 of 70)	intron (NM_021408, intron 36 of 70)	347686	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding
h3k4me3_het_wt_up-29	chr13	119597638	119598417	+	0	NA	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-25792	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
h3k27me3_ko_wt_down-430	chr12	90011864	90014028	+	0	NA	intron (NM_172544, intron 15 of 19)	intron (NM_172544, intron 15 of 19)	200463	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_up-246	chr10	91675411	91677186	+	0	NA	Intergenic	Intergenic	395887	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA
h3k4me3_het_wt_up-31	chr14	49127071	49127919	+	0	NA	Intergenic	Intergenic	-44751	NM_027492	70646	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding
h3k27ac_ko_wt_down-257	chr13	85436822	85437334	+	0	NA	Intergenic	Intergenic	-147592	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding
h3k4me3_ko_wt_up-341	chr10	121836679	121837590	+	0	NA	intron (NM_001081037, intron 10 of 21)	intron (NM_001081037, intron 10 of 21)	97197	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding
h3k27me3_ko_wt_up-333	chr14	123144605	123149703	+	0	NA	Intergenic	Intergenic	-21349	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k4me3_het_wt_up-28	chr13	77438852	77439148	+	0	NA	intron (NM_001145676, intron 19 of 19)	GSAT_MM|Satellite|Satellite	-269690	NM_138312	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
h3k27me3_ko_wt_down-104	chr3	114345182	114348487	+	0	NA	Intergenic	L1_Mur1|LINE|L1	316294	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding
h3k27me3_ko_wt_down-168	chr4	66390040	66407413	+	0	NA	intron (NM_207109, intron 1 of 22)	intron (NM_207109, intron 1 of 22)	5757	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27me3_ko_wt_up-21	chr1	130877186	130880224	+	0	NA	intron (NM_026976, intron 7 of 7)	intron (NM_026976, intron 7 of 7)	8706	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding
h3k27me3_ko_wt_up-39	chr2	5061476	5063478	+	0	NA	intron (NM_181848, intron 1 of 14)	intron (NM_181848, intron 1 of 14)	1461	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding
h3k4me3_ko_wt_up-246	chr7	36702634	36705234	+	0	NA	intron (NM_172298, intron 1 of 1)	intron (NM_172298, intron 1 of 1)	5816	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding
h3k4me3_ko_wt_up-363	chr11	78096509	78097058	+	0	NA	intron (NM_145430, intron 1 of 2)	intron (NM_145430, intron 1 of 2)	2110	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding
h3k4me3_ko_wt_up-270	chr7	144937521	144941827	+	0	NA	exon (NM_007631, exon 1 of 5)	exon (NM_007631, exon 1 of 5)	251	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding
h3k4me3_ko_wt_up-124	chr3	121155926	121158656	+	0	NA	intron (NM_028456, intron 2 of 4)	intron (NM_028456, intron 2 of 4)	14404	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding
h3k27ac_ko_wt_up-40	chr2	77931754	77932191	+	0	NA	intron (NM_030560, intron 4 of 20)	intron (NM_030560, intron 4 of 20)	14384	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-490	chr14	93071698	93074417	+	0	NA	intron (NM_001271800, intron 2 of 2)	intron (NM_001271800, intron 2 of 2)	815831	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k4me3_ko_wt_down-173	chr14	105332985	105334078	+	0	NA	Intergenic	Intergenic	74858	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
h3k4me3_ko_wt_down-5	chr1	56948572	56954305	+	0	NA	intron (NM_139146, intron 2 of 10)	intron (NM_139146, intron 2 of 10)	19896	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
h3k27me3_ko_wt_down-251	chr6	6457683	6459997	+	0	NA	Intergenic	Intergenic	119818	NM_009169	20422	Mm.2469	NM_009169		Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding
h3k4me3_ko_wt_up-36	chr1	172549874	172550967	+	0	NA	intron (NR_040558, intron 1 of 2)	L3|LINE|CR1	386	NR_040558	71319	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA
h3k27me3_ko_wt_down-501	chr14	100469410	100470519	+	0	NA	Intergenic	Intergenic	-320168	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k4me3_ko_wt_up-96	chr2	170266658	170267499	+	0	NA	Intergenic	Intergenic	-89283	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA
h3k27me3_ko_wt_down-473	chr14	11088762	11090876	+	0	NA	intron (NM_001308285, intron 2 of 9)	intron (NM_001308285, intron 2 of 9)	72216	NM_001308285	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding
h3k27me3_het_wt_down-5	chr15	3570500	3579216	+	0	NA	intron (NM_010284, intron 1 of 10)	intron (NM_010284, intron 1 of 10)	6984	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
h3k27ac_ko_wt_up-42	chr2	77945224	77946649	+	0	NA	intron (NM_030560, intron 1 of 20)	CpG	420	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-104	chr2	177839585	177840669	+	0	NA	intron (NM_001024849, intron 1 of 3)	RMER17B|LTR|ERVK	191	NM_001024849	329575	Mm.425123	NM_001024849		Gm14325	OTTMUSG00000016325	predicted gene 14325	protein-coding
h3k27me3_het_wt_down-3	chr8	123600539	123601425	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-34895	NR_046140	100861488		NR_046140	ENSMUSG00000094916	Gm26391	Rn5s17	predicted gene, 26391	rRNA
h3k27me3_ko_wt_up-259	chr11	72132898	72137457	+	0	NA	intron (NM_001024927, intron 1 of 19)	intron (NM_001024927, intron 1 of 19)	712	NM_001081641	327958	Mm.351793	NM_001024927	ENSMUSG00000040543	Pitpnm3	A330068P14Rik|AI848332|Ackr6|Gm880	PITPNM family member 3	protein-coding
h3k27me3_ko_wt_up-16	chr1	87474211	87475769	+	0	NA	intron (NM_028473, intron 1 of 2)	intron (NM_028473, intron 1 of 2)	4726	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding
h3k27me3_ko_wt_down-181	chr4	84638675	84641356	+	0	NA	intron (NM_172870, intron 1 of 5)	intron (NM_172870, intron 1 of 5)	35071	NM_172870	242509	Mm.190774	NM_172870		Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding
h3k27ac_ko_wt_up-132	chr6	95674958	95675543	+	0	NA	intron (NM_011507, intron 1 of 10)	intron (NM_011507, intron 1 of 10)	43596	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding
h3k27me3_het_wt_up-5	chr2	77978355	77981296	+	0	NA	Intergenic	Intergenic	-33469	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-282	chr8	41040707	41042054	+	0	NA	intron (NM_001286413, intron 5 of 13)	intron (NM_001286413, intron 5 of 13)	551	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding
h3k27ac_ko_wt_up-23	chr1	115831565	115832422	+	0	NA	intron (NM_001077425, intron 1 of 23)	intron (NM_001077425, intron 1 of 23)	146856	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding
h3k4me3_ko_wt_up-18	chr1	87263888	87265224	+	0	NA	exon (NM_028889, exon 1 of 4)	exon (NM_028889, exon 1 of 4)	192	NM_028889	98363	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding
h3k27me3_ko_wt_down-540	chr16	58061907	58066358	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-309395	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
h3k27me3_ko_wt_down-231	chr5	69948927	69954347	+	0	NA	Intergenic	Intergenic	-359352	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding
h3k4me3_ko_wt_up-373	chr11	95586193	95587586	+	0	NA	intron (NM_033217, intron 1 of 5)	intron (NM_033217, intron 1 of 5)	809	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding
h3k4me3_ko_wt_down-175	chr15	76710123	76711569	+	0	NA	promoter-TSS (NM_058214)	promoter-TSS (NM_058214)	106	NM_145471	223664	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding
h3k4me3_ko_wt_up-260	chr7	116037437	116040887	+	0	NA	promoter-TSS (NM_001025559)	promoter-TSS (NM_001025559)	-418	NM_001025559	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
h3k27me3_het_wt_down-24	chrX	152206466	152208328	+	0	NA	intron (NM_001005475, intron 4 of 13)	MLT1F|LTR|ERVL-MaLR	-25830	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding
h3k27me3_ko_wt_up-409	chr17	67556952	67561465	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	73515	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding
h3k4me3_ko_wt_up-450	chr14	70617774	70619097	+	0	NA	5' UTR (NM_001252666, exon 1 of 12)	5' UTR (NM_001252666, exon 1 of 12)	134	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding
h3k4me3_ko_wt_up-83	chr2	132879059	132879937	+	0	NA	exon (NM_177303, exon 2 of 5)	exon (NM_177303, exon 2 of 5)	1364	NM_177303	320974	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding
h3k27ac_ko_wt_up-233	chr14	121708396	121708886	+	0	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	-10224	NM_001081039	105445	Mm.441054	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding
h3k4me3_ko_wt_up-183	chr5	64646982	64648147	+	0	NA	Intergenic	Intergenic	-36865	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA
h3k4me3_ko_wt_up-37	chr1	176929589	176931941	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-94632	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
h3k4me3_ko_wt_up-97	chr2	172550328	172553239	+	0	NA	exon (NM_001159696, exon 2 of 7)	exon (NM_001159696, exon 2 of 7)	792	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding
h3k27me3_ko_wt_up-27	chr1	179059025	179060401	+	0	NA	intron (NM_027188, intron 8 of 11)	intron (NM_027188, intron 8 of 11)	458290	NM_027188	69726	Mm.222338	NM_027188		Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding
h3k4me3_ko_wt_up-508	chr17	33919299	33920948	+	0	NA	TTS (NM_020625)	TTS (NM_020625)	645	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding
h3k4me3_ko_wt_down-26	chr2	155018389	155020164	+	0	NA	intron (NM_015770, intron 1 of 3)	ERVB4_1-I_MM-int|LTR|ERVK	5706	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding
h3k27ac_ko_wt_down-42	chr2	49655000	49655948	+	0	NA	intron (NM_008449, intron 1 of 25)	intron (NM_008449, intron 1 of 25)	36160	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding
h3k27me3_ko_wt_down-584	chr18	6143386	6146751	+	0	NA	Intergenic	Intergenic	-8970	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
h3k4me3_het_wt_up-37	chr17	13550763	13551093	+	0	NA	intron (NR_045436, intron 1 of 4)	(CTGTG)n|Simple_repeat|Simple_repeat	3166	NR_045436	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA
h3k4me3_ko_wt_up-509	chr17	33999210	34000615	+	0	NA	exon (NM_001001892, exon 2 of 8)	exon (NM_001001892, exon 2 of 8)	421	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding
h3k27me3_ko_wt_down-389	chr11	44966373	44971120	+	0	NA	intron (NM_001290709, intron 10 of 15)	intron (NM_001290709, intron 10 of 15)	148182	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA
h3k4me3_ko_wt_down-166	chr13	118385691	118387711	+	0	NA	exon (NM_021556, exon 1 of 5)	exon (NM_021556, exon 1 of 5)	551	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding
h3k4me3_ko_wt_up-347	chr11	5901527	5902454	+	0	NA	intron (NM_001287386, intron 9 of 9)	intron (NM_001287386, intron 9 of 9)	-3208	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding
h3k27me3_ko_wt_down-11	chr1	61261612	61268191	+	0	NA	Intergenic	Intergenic	-113531	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27me3_ko_wt_down-450	chr13	21556946	21559578	+	0	NA	Intergenic	Intergenic	-2242	NM_207572	404335	Mm.377341	NM_207572	ENSMUSG00000054890	Olfr1535	MOR256-36|MOR256-63|Olfr1365	olfactory receptor 1535	protein-coding
h3k4me3_ko_wt_down-19	chr2	76070108	76070799	+	0	NA	intron (NM_001081033, intron 12 of 19)	intron (NM_001081033, intron 12 of 19)	-88486	NM_030188	78802	Mm.282339	NM_030188		Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding
h3k27me3_ko_wt_up-501	chrX	137753147	137756796	+	0	NA	intron (NM_030688, intron 2 of 10)	intron (NM_030688, intron 2 of 10)	184217	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding
h3k27me3_ko_wt_down-375	chr11	18418210	18422127	+	0	NA	Intergenic	L1_Mus3|LINE|L1	324182	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
h3k27ac_ko_wt_down-117	chr5	62813408	62814738	+	0	NA	exon (NM_001170705, exon 1 of 9)	exon (NM_001170705, exon 1 of 9)	250	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
h3k27ac_ko_wt_down-292	chr15	40978398	40979672	+	0	NA	intron (NM_011766, intron 5 of 7)	intron (NM_011766, intron 5 of 7)	323993	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding
h3k27me3_ko_wt_up-104	chr3	101070359	101072712	+	0	NA	intron (NM_011197, intron 4 of 8)	intron (NM_011197, intron 4 of 8)	38631	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27me3_ko_wt_up-234	chr10	64402893	64404649	+	0	NA	intron (NM_001164376, intron 9 of 17)	intron (NM_001164376, intron 9 of 17)	-313516	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding
h3k27me3_ko_wt_down-291	chr7	125064855	125068044	+	0	NA	Intergenic	Intergenic	283337	NR_045803	71208	Mm.159465	NM_172408		4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA
h3k27me3_ko_wt_down-84	chr2	118973439	118974737	+	0	NA	Intergenic	B4|SINE|B4	47591	NM_028117	72136	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding
h3k4me3_ko_wt_down-147	chr12	86082378	86083272	+	0	NA	intron (NM_001199843, intron 1 of 8)	CpG	264	NM_029601	76411	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding
h3k27me3_ko_wt_down-265	chr6	110739419	110743674	+	0	NA	intron (NM_177328, intron 1 of 9)	intron (NM_177328, intron 1 of 9)	95948	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|mGluR7	glutamate receptor, metabotropic 7	protein-coding
h3k27ac_ko_wt_down-162	chr7	91216171	91218442	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	126520	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-537	chr18	38379913	38380821	+	0	NA	Intergenic	Intergenic	-38608	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding
h3k27me3_ko_wt_up-342	chr15	6310864	6313925	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	12605	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k27me3_het_wt_down-9	chrX	13240932	13244750	+	0	NA	intron (NR_045429, intron 1 of 2)	LTR16E2|LTR|ERVL	4892	NR_045429	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA
h3k27ac_ko_wt_down-183	chr9	42544293	42544919	+	0	NA	intron (NM_175481, intron 16 of 20)	intron (NM_175481, intron 16 of 20)	-72380	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding
h3k4me3_ko_wt_up-22	chr1	134076340	134079830	+	0	NA	intron (NM_007570, intron 1 of 1)	intron (NM_007570, intron 1 of 1)	1070	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding
h3k4me3_ko_wt_up-122	chr3	102010527	102012735	+	0	NA	intron (NM_178777, intron 2 of 2)	intron (NM_178777, intron 2 of 2)	1486	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding
h3k4me3_ko_wt_up-43	chr2	4717318	4719064	+	0	NA	5' UTR (NM_178663, exon 1 of 9)	5' UTR (NM_178663, exon 1 of 9)	360	NM_178663	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding
h3k27me3_ko_wt_down-513	chr15	25938648	25942152	+	0	NA	promoter-TSS (NM_025459)	promoter-TSS (NM_025459)	-302	NM_001277315	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding
h3k27ac_ko_wt_up-250	chr16	44195928	44196704	+	0	NA	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	22919	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Gm608	5530400K22Rik|Gm1779|mKIAA2018	predicted gene 608	protein-coding
h3k4me3_ko_wt_up-223	chr6	101196634	101197135	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	181013	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
h3k4me3_ko_wt_up-300	chr9	24499357	24499813	+	0	NA	intron (NM_172920, intron 1 of 21)	intron (NM_172920, intron 1 of 21)	3555	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
h3k27me3_ko_wt_down-456	chr13	47870878	47873756	+	0	NA	Intergenic	Intergenic	-38118	NR_045156	619327	Mm.412752	NR_045156		G630093K05Rik	-	RIKEN cDNA G630093K05 gene	ncRNA
h3k27me3_ko_wt_down-223	chr5	48510719	48522962	+	0	NA	intron (NM_001199244, intron 1 of 7)	Lx|LINE|L1	-7079	NM_001199242	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
h3k4me3_ko_wt_up-210	chr6	6849810	6850914	+	0	NA	intron (NR_015388, intron 1 of 1)	intron (NR_015388, intron 1 of 1)	-12972	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding
h3k4me3_ko_wt_down-59	chr5	76973896	76975770	+	0	NA	intron (NM_025691, intron 1 of 18)	CpG	132	NM_025691	66661	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding
h3k27ac_ko_wt_up-82	chr3	102734211	102735924	+	0	NA	promoter-TSS (NM_001243132)	promoter-TSS (NM_001243132)	-148	NM_001243132	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding
h3k4me3_ko_wt_up-556	chr19	5071374	5072769	+	0	NA	Intergenic	Intergenic	3993	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding
h3k27me3_ko_wt_up-66	chr2	96058128	96060777	+	0	NA	Intergenic	Lx5|LINE|L1	-258717	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_up-433	chr13	110018473	110019671	+	0	NA	Intergenic	Intergenic	115263	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
h3k27me3_ko_wt_down-452	chr13	25309924	25314289	+	0	NA	Intergenic	Intergenic	-42110	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding
h3k27me3_ko_wt_down-247	chr5	106756463	106759055	+	0	NA	Intergenic	Intergenic	-60929	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding
h3k4me3_ko_wt_down-34	chr3	95881532	95883167	+	0	NA	promoter-TSS (NM_001033302)	promoter-TSS (NM_001033302)	-121	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding
h3k27ac_ko_wt_down-99	chr4	152832862	152834439	+	0	NA	Intergenic	Intergenic	136110	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA
h3k27me3_ko_wt_up-331	chr14	122581510	122582327	+	0	NA	intron (NM_144844, intron 4 of 23)	intron (NM_144844, intron 4 of 23)	47590	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding
h3k27me3_ko_wt_up-128	chr5	36864284	36872832	+	0	NA	promoter-TSS (NM_172994)	promoter-TSS (NM_172994)	-12	NM_172994	269643	Mm.41694	NM_172994	ENSMUSG00000029120	Ppp2r2c	6330548O06Rik|IMYPNO|IMYPNO1|PR52	protein phosphatase 2, regulatory subunit B, gamma	protein-coding
h3k27me3_ko_wt_down-259	chr6	79331936	79333677	+	0	NA	Intergenic	L1M4|LINE|L1	300764	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA
h3k27me3_ko_wt_down-509	chr15	3568550	3570490	+	0	NA	intron (NM_010284, intron 1 of 10)	intron (NM_010284, intron 1 of 10)	12322	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
h3k4me3_ko_wt_down-211	chrX	137037139	137038599	+	0	NA	intron (NM_001082412, intron 1 of 6)	intron (NM_001082412, intron 1 of 6)	433	NM_001082412	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding
h3k27me3_ko_wt_down-304	chr8	31925915	31929913	+	0	NA	Intergenic	Intergenic	-9711	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding
h3k27me3_ko_wt_down-368	chr10	115797461	115798945	+	0	NA	Intergenic	B4|SINE|B4	-19081	NM_146010	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding
h3k27me3_ko_wt_down-96	chr3	29337858	29339268	+	0	NA	intron (NM_001167748, intron 4 of 12)	intron (NM_001167748, intron 4 of 12)	-78260	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA
h3k27ac_ko_wt_down-89	chr4	30840855	30841809	+	0	NA	intron (NR_040655, intron 6 of 6)	intron (NR_040655, intron 6 of 6)	176736	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
h3k27me3_ko_wt_down-6	chr1	19858690	19860398	+	0	NA	Intergenic	Intergenic	-496910	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
h3k27ac_ko_wt_up-77	chr3	38482155	38482849	+	0	NA	intron (NM_001167883, intron 2 of 3)	intron (NM_001167883, intron 2 of 3)	2314	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding
h3k27me3_ko_wt_up-389	chr16	48749586	48751358	+	0	NA	intron (NM_198297, intron 3 of 5)	intron (NM_198297, intron 3 of 5)	21484	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding
h3k27me3_ko_wt_up-226	chr9	106654559	106656311	+	0	NA	intron (NM_001160353, intron 1 of 5)	intron (NM_001160353, intron 1 of 5)	674	NM_001160353	108068	Mm.410822	NM_001160353		Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding
h3k4me3_ko_wt_down-7	chr1	84709226	84710771	+	0	NA	Intergenic	Intergenic	-13777	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding
h3k27me3_ko_wt_down-546	chr16	81447462	81448312	+	0	NA	intron (NM_010954, intron 5 of 15)	intron (NM_010954, intron 5 of 15)	247190	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
h3k27me3_ko_wt_down-407	chr12	47390823	47395541	+	0	NA	Intergenic	Intergenic	-574407	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k27me3_ko_wt_up-399	chr17	9405934	9410026	+	0	NA	Intergenic	Intergenic	-239958	NR_027881	67791	Mm.158175	NR_027881	ENSMUSG00000097049	6530411M01Rik	-	RIKEN cDNA 6530411M01 gene	ncRNA
h3k27ac_ko_wt_down-31	chr1	171715556	171716104	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	33775	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding
h3k27me3_ko_wt_up-219	chr9	91139638	91140557	+	0	NA	Intergenic	Charlie8|DNA|hAT-Charlie	225702	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding
h3k27me3_ko_wt_down-542	chr16	65862817	65864262	+	0	NA	TTS (NM_028572)	TTS (NM_028572)	47906	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like 3 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-189	chr9	90771986	90772806	+	0	NA	Intergenic	Intergenic	-501627	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
h3k27me3_ko_wt_down-278	chr7	52971475	52972340	+	0	NA	Intergenic	Intergenic	919982	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
h3k27ac_ko_wt_down-241	chr13	12319941	12320724	+	0	NA	intron (NM_033268, intron 1 of 20)	intron (NM_033268, intron 1 of 20)	20400	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding
h3k27me3_ko_wt_up-199	chr8	36479821	36481910	+	0	NA	Intergenic	Intergenic	-8326	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
h3k27ac_ko_wt_down-28	chr1	131491568	131492905	+	0	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	35125	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
h3k27me3_ko_wt_up-451	chrX	48454893	48456021	+	0	NA	intron (NM_019680, intron 1 of 8)	intron (NM_019680, intron 1 of 8)	7675	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding
h3k27ac_ko_wt_down-186	chr9	80216636	80217269	+	0	NA	intron (NM_001039546, intron 1 of 32)	L1ME2|LINE|L1	51918	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding
h3k4me3_ko_wt_up-571	chr19	61199579	61200464	+	0	NA	Intergenic	MURVY-LTR|LTR|ERV1	-23712	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding
h3k27ac_ko_wt_up-241	chr15	59973158	59975723	+	0	NA	Intergenic	Intergenic	42178	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding
h3k27me3_ko_wt_up-189	chr7	101503545	101504580	+	0	NA	intron (NM_001008548, intron 16 of 30)	intron (NM_001008548, intron 16 of 30)	28686	NR_029791	387157		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA
h3k4me3_het_wt_down-8	chr13	102957126	102958592	+	0	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	197604	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA
h3k27me3_ko_wt_down-398	chr12	39063413	39066593	+	0	NA	Intergenic	Intergenic	281292	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k27me3_ko_wt_up-79	chr2	157915353	157918242	+	0	NA	intron (NM_198627, intron 1 of 3)	intron (NM_198627, intron 1 of 3)	2144	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding
h3k4me3_ko_wt_down-47	chr4	108847260	108849364	+	0	NA	exon (NM_029571, exon 1 of 1)	exon (NM_029571, exon 1 of 1)	455	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-57	chr2	77983868	77987432	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-39294	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-78	chr2	145298012	145301068	+	0	NA	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	56929	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
h3k27me3_ko_wt_down-483	chr14	52031532	52033616	+	0	NA	Intergenic	Intergenic	3535	NM_001001808	258420	Mm.377946	NM_001001808	ENSMUSG00000044286	Olfr221	MOR205-1|MOR205-2|Olfr1514|Olfr221-ps1	olfactory receptor 221	protein-coding
h3k4me3_ko_wt_down-182	chr16	94994438	94997960	+	0	NA	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	1497	NM_010606	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
h3k27me3_ko_wt_up-201	chr8	60598352	60599449	+	0	NA	Intergenic	ETnERV3-int|LTR|ERVK	-33925	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding
h3k4me3_ko_wt_up-567	chr19	45814028	45816539	+	0	NA	intron (NM_145703, intron 1 of 9)	intron (NM_145703, intron 1 of 9)	780	NM_030716	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding
h3k4me3_ko_wt_up-70	chr2	98662411	98662804	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	1194950	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27me3_ko_wt_up-328	chr14	80298240	80301681	+	0	NA	Intergenic	Intergenic	299658	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
h3k27me3_ko_wt_down-99	chr3	34440588	34445989	+	0	NA	Intergenic	Intergenic	-117093	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA
h3k27me3_ko_wt_up-131	chr5	48702210	48702930	+	0	NA	intron (NM_001199244, intron 1 of 7)	MTE-int|LTR|ERVL-MaLR	-102888	NM_001199245	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding
h3k27me3_ko_wt_down-93	chr3	15168241	15169252	+	0	NA	Intergenic	Intergenic	163556	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding
h3k4me3_ko_wt_up-420	chr13	73763430	73765159	+	0	NA	intron (NM_011390, intron 1 of 23)	intron (NM_011390, intron 1 of 23)	597	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding
h3k27ac_ko_wt_up-162	chr9	15782401	15782814	+	0	NA	Intergenic	Intergenic	72838	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding
h3k27me3_ko_wt_up-494	chrX	104980155	104981820	+	0	NA	Intergenic	L1MB8|LINE|L1	89137	NR_015467	71445	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA
h3k4me3_ko_wt_up-413	chr13	37856995	37858328	+	0	NA	intron (NM_001039188, intron 1 of 9)	CpG	30268	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding
h3k27me3_ko_wt_up-445	chrX	12156851	12158184	+	0	NA	intron (NR_045434, intron 1 of 3)	intron (NR_045434, intron 1 of 3)	2829	NR_045434	72937	Mm.440386	NR_045434		2900008C10Rik	-	RIKEN cDNA 2900008C10 gene	ncRNA
h3k4me3_ko_wt_up-230	chr6	127329725	127330941	+	0	NA	Intergenic	Intergenic	-22366	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA
h3k27ac_ko_wt_up-180	chr10	43625256	43626083	+	0	NA	intron (NR_033558, intron 2 of 2)	intron (NR_033558, intron 2 of 2)	32242	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
h3k27me3_ko_wt_down-320	chr8	53205325	53208370	+	0	NA	Intergenic	L1MC4a|LINE|L1	-304855	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding
h3k27ac_ko_wt_up-26	chr1	141713223	141713642	+	0	NA	Intergenic	Intergenic	-1057030	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA
h3k27me3_ko_wt_up-484	chrX	103412571	103413467	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-1448	NM_009440	22127	Mm.358644	NM_009440	ENSMUSG00000031329	Tsx	AV207184	testis specific X-linked gene	protein-coding
h3k27me3_ko_wt_down-338	chr9	20549054	20552829	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-29522	NM_001135019	77519	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding
h3k4me3_ko_wt_up-445	chr14	62455464	62457121	+	0	NA	promoter-TSS (NM_001204340)	promoter-TSS (NM_001204340)	-3	NM_001204340	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding
h3k4me3_ko_wt_down-208	chrX	60146923	60147999	+	0	NA	intron (NM_001289731, intron 4 of 27)	intron (NM_001289731, intron 4 of 27)	239	NM_133197	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding
h3k4me3_ko_wt_up-41	chr1	181921634	181922950	+	0	NA	exon (NM_008680, exon 7 of 15)	exon (NM_008680, exon 7 of 15)	-79891	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding
h3k27me3_ko_wt_up-473	chrX	94371299	94373278	+	0	NA	intron (NM_001199337, intron 1 of 8)	intron (NM_001199337, intron 1 of 8)	5134	NM_001199339	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding
h3k27ac_ko_wt_up-45	chr2	78010400	78011020	+	0	NA	Intergenic	Intergenic	-40467	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27ac_ko_wt_down-258	chr13	91128479	91129592	+	0	NA	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	94952	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
h3k27ac_ko_wt_down-150	chr7	54150721	54151236	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-259089	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
h3k27ac_ko_wt_up-263	chr17	71782356	71783440	+	0	NA	intron (NM_030179, intron 1 of 15)	CpG	951	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
h3k27ac_ko_wt_down-125	chr6	14141097	14142849	+	0	NA	Intergenic	Intergenic	270404	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
h3k4me3_ko_wt_up-86	chr2	153491590	153493277	+	0	NA	intron (NM_001134300, intron 1 of 10)	CpG	37538	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding
h3k4me3_ko_wt_down-100	chr8	40963036	40963984	+	0	NA	intron (NM_026840, intron 2 of 5)	intron (NM_026840, intron 2 of 5)	37277	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding
h3k27ac_ko_wt_down-320	chr18	21757332	21759288	+	0	NA	Intergenic	Intergenic	-105942	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding
h3k4me3_ko_wt_up-517	chr17	47736996	47738564	+	0	NA	promoter-TSS (NM_001161723)	promoter-TSS (NM_001161723)	-151	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding
h3k27me3_ko_wt_down-295	chr8	22321291	22322414	+	0	NA	intron (NM_199257, intron 12 of 27)	intron (NM_199257, intron 12 of 27)	38411	NM_199257	234129	Mm.450553	NM_181851	ENSMUSG00000031481	Tpte	Pten2	transmembrane phosphatase with tensin homology	protein-coding
h3k4me3_ko_wt_up-249	chr7	45628207	45628932	+	0	NA	exon (NM_028544, exon 3 of 12)	exon (NM_028544, exon 3 of 12)	1032	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding
h3k27me3_ko_wt_down-261	chr6	81060638	81064251	+	0	NA	Intergenic	Intergenic	833219	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA
h3k27me3_ko_wt_up-142	chr6	15803371	15805652	+	0	NA	Intergenic	Intergenic	83850	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27me3_ko_wt_up-247	chr10	92642882	92644053	+	0	NA	Intergenic	Intergenic	78951	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding
h3k27me3_het_wt_down-6	chr17	35343486	35344306	+	0	NA	intron (NM_010392, intron 3 of 6)	intron (NM_010392, intron 3 of 6)	1563	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding
h3k4me3_ko_wt_up-248	chr7	40902339	40903674	+	0	NA	intron (NM_021387, intron 4 of 4)	intron (NM_021387, intron 4 of 4)	3728	NM_021387	58188	Mm.150675	NM_021387		Vstm2b	2900093B09Rik|AB030198	V-set and transmembrane domain containing 2B	protein-coding
h3k4me3_ko_wt_up-441	chr14	34896314	34896715	+	0	NA	intron (NM_008166, intron 2 of 15)	CpG	1905	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA
h3k4me3_ko_wt_up-294	chr8	115701582	115705472	+	0	NA	3' UTR (NM_001025577, exon 1 of 1)	3' UTR (NM_001025577, exon 1 of 1)	3367	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
h3k27me3_ko_wt_up-519	chrX	169767934	169768973	+	0	NA	intron (NM_010797, intron 1 of 9)	MIRb|SINE|MIR	11182	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k27me3_ko_wt_up-304	chr13	64127526	64130172	+	0	NA	intron (NM_001001321, intron 1 of 11)	PB1D7|SINE|Alu	481	NM_001001321	70484	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding
h3k27ac_ko_wt_down-194	chr10	11960411	11960940	+	0	NA	Intergenic	Intergenic	351451	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding
h3k27ac_ko_wt_up	chr1	3399462	3400451	+	0	NA	intron (NM_001011874, intron 2 of 2)	intron (NM_001011874, intron 2 of 2)	271542	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X Kell blood group precursor related family member 4	protein-coding
h3k27me3_ko_wt_down-326	chr8	61261851	61262964	+	0	NA	intron (NM_021506, intron 2 of 11)	intron (NM_021506, intron 2 of 11)	26465	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA
h3k4me3_het_wt_up-17	chr4	12982136	12984384	+	0	NA	Intergenic	Intergenic	76423	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
h3k27me3_ko_wt_down-322	chr8	55944446	55944953	+	0	NA	intron (NM_080438, intron 1 of 9)	intron (NM_080438, intron 1 of 9)	3874	NM_080438	110304	Mm.307061	NM_080438		Glra3	-	glycine receptor, alpha 3 subunit	protein-coding
h3k27me3_ko_wt_down-371	chr11	8913966	8914985	+	0	NA	Intergenic	L1M4b|LINE|L1	96716	NM_008316	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	Hus1 homolog (S. pombe)	protein-coding
h3k27ac_ko_wt_down-264	chr14	37716096	37717020	+	0	NA	Intergenic	Intergenic	-581236	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
h3k4me3_ko_wt_down-169	chr14	64573772	64576827	+	0	NA	Intergenic	Intergenic	-12816	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA
h3k4me3_ko_wt_down-163	chr13	67375189	67376159	+	0	NA	promoter-TSS (NM_001001186)	promoter-TSS (NM_001001186)	89	NM_001001186	408065	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding
h3k27me3_ko_wt_down-414	chr12	52788556	52791227	+	0	NA	intron (NM_198111, intron 1 of 13)	intron (NM_198111, intron 1 of 13)	90508	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding
h3k27ac_ko_wt_up-213	chr13	89117404	89118122	+	0	NA	intron (NM_010103, intron 4 of 9)	intron (NM_010103, intron 4 of 9)	296291	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding
h3k27ac_ko_wt_up-85	chr3	114749031	114749506	+	0	NA	Intergenic	Intergenic	-113985	NR_030469	735255		NR_030469	ENSMUSG00000076126	Mir669b	Mirn669b	microRNA 669b	ncRNA
h3k4me3_ko_wt_up-526	chr17	86753032	86754624	+	0	NA	promoter-TSS (NM_010137)	promoter-TSS (NM_010137)	-36	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding
h3k4me3_ko_wt_up-81	chr2	127362627	127363266	+	0	NA	promoter-TSS (NM_009633)	promoter-TSS (NM_009633)	-340	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding
h3k27ac_ko_wt_down-6	chr1	25163155	25164238	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	114258	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
h3k27ac_ko_wt_up-220	chr13	108122655	108124149	+	0	NA	intron (NM_001127346, intron 1 of 3)	intron (NM_001127346, intron 1 of 3)	35223	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding
h3k4me3_ko_wt_up-253	chr7	75781651	75782365	+	0	NA	Intergenic	CpG	-66330	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding
h3k27me3_ko_wt_down-158	chr4	62583023	62586967	+	0	NA	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	25148	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
h3k4me3_ko_wt_up-46	chr2	20960309	20962503	+	0	NA	intron (NM_001081364, intron 1 of 23)	intron (NM_001081364, intron 1 of 23)	6315	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding
h3k27ac_ko_wt_up-174	chr10	28144085	28144836	+	0	NA	intron (NM_008983, intron 1 of 31)	intron (NM_008983, intron 1 of 31)	69640	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding
h3k27me3_ko_wt_down-179	chr4	84285459	84288425	+	0	NA	intron (NM_172870, intron 5 of 5)	intron (NM_172870, intron 5 of 5)	-242063	NR_130998	78238	Mm.243903	NR_130998		6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA
h3k27me3_ko_wt_up-411	chr18	38025803	38027010	+	0	NA	Intergenic	Intergenic	-27437	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding
h3k4me3_ko_wt_up-25	chr1	150991997	150993627	+	0	NA	exon (NM_001024720, exon 1 of 107)	exon (NM_001024720, exon 1 of 107)	623	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|Gm201	hemicentin 1	protein-coding
h3k27ac_ko_wt_up-30	chr1	192946727	192947341	+	0	NA	intron (NM_001301370, intron 4 of 8)	intron (NM_001301370, intron 4 of 8)	88741	NM_181546	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding
h3k27ac_ko_wt_up-90	chr3	153300587	153300983	+	0	NA	intron (NM_011372, intron 3 of 4)	intron (NM_011372, intron 3 of 4)	-2136	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA
h3k27ac_ko_wt_up-21	chr1	94053148	94054462	+	0	NA	Intergenic	Intergenic	-1252	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
h3k27ac_ko_wt_up-245	chr15	85490003	85490417	+	0	NA	Intergenic	Intergenic	13017	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding
h3k4me3_het_wt_up-26	chr8	111299278	111300524	+	0	NA	intron (NM_146218, intron 1 of 12)	CpG	321	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding
h3k4me3_ko_wt_up-575	chrX	49480159	49481322	+	0	NA	intron (NM_001081123, intron 1 of 12)	intron (NM_001081123, intron 1 of 12)	10290	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding
h3k27me3_ko_wt_down-185	chr4	91377613	91384180	+	0	NA	intron (NM_207685, intron 2 of 7)	intron (NM_207685, intron 2 of 7)	-4400	NM_001177883	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
h3k27ac_ko_wt_down-138	chr6	47050221	47051424	+	0	NA	intron (NM_001004357, intron 18 of 23)	intron (NM_001004357, intron 18 of 23)	-193574	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k27ac_ko_wt_down-230	chr12	64858041	64858650	+	0	NA	Intergenic	Intergenic	-59566	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
h3k27ac_ko_wt_up-112	chr5	18881739	18882699	+	0	NA	Intergenic	Intergenic	344336	NR_102342	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA
h3k4me3_ko_wt_up-152	chr4	97745474	97746347	+	0	NA	intron (NM_001122952, intron 1 of 10)	CpG	-31716	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
h3k27me3_ko_wt_down-235	chr5	77666458	77667390	+	0	NA	Intergenic	Intergenic	201436	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
h3k27me3_ko_wt_up-36	chr1	187825510	187826392	+	0	NA	intron (NM_001243792, intron 2 of 7)	intron (NM_001243792, intron 2 of 7)	-171876	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding
h3k4me3_ko_wt_up-463	chr15	50886676	50890911	+	0	NA	TTS (NR_035444)	TTS (NR_035444)	256	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
h3k27me3_ko_wt_down-317	chr8	49999674	50003371	+	0	NA	Intergenic	Intergenic	-366590	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
h3k4me3_ko_wt_up-323	chr10	42632017	42633510	+	0	NA	Intergenic	Intergenic	-46153	NM_172416	14628	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding
h3k27me3_ko_wt_down-420	chr12	89694860	89696613	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-116747	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_up-483	chrX	103393372	103395045	+	0	NA	3' UTR (NM_009767, exon 6 of 6)	3' UTR (NM_009767, exon 6 of 6)	-20259	NM_009440	22127	Mm.358644	NM_009440	ENSMUSG00000031329	Tsx	AV207184	testis specific X-linked gene	protein-coding
h3k4me3_ko_wt_up-310	chr9	78378165	78379086	+	0	NA	promoter-TSS (NM_026480)	promoter-TSS (NM_026480)	-37	NM_026480	67968	Mm.26883	NM_026480		Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding
h3k27me3_ko_wt_up-420	chr18	66323161	66324635	+	0	NA	Intergenic	Intergenic	-32060	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding
h3k4me3_ko_wt_up-200	chr5	139380007	139381373	+	0	NA	promoter-TSS (NM_030258)	promoter-TSS (NM_030258)	23	NM_030258	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding
h3k27me3_ko_wt_down-10	chr1	61141003	61144520	+	0	NA	Intergenic	Intergenic	164847	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding
h3k27me3_ko_wt_down-438	chr12	107294202	107295801	+	0	NA	Intergenic	Intergenic	440487	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
h3k27me3_ko_wt_up-43	chr2	36228881	36231620	+	0	NA	promoter-TSS (NM_008969)	promoter-TSS (NM_008969)	-176	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding
h3k4me3_ko_wt_up-164	chr4	136171697	136172436	+	0	NA	promoter-TSS (NM_177733)	promoter-TSS (NM_177733)	-208	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding
h3k27ac_ko_wt_up-47	chr2	85204719	85205343	+	0	NA	Intergenic	Intergenic	-8332	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding
h3k27me3_ko_wt_up-493	chrX	104888340	104889669	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-31737	NM_053206	272790	Mm.165776	NM_053206	ENSMUSG00000031224	Magee2	9630059J11Rik|BB131182|Mage-e2	melanoma antigen, family E, 2	protein-coding
h3k27me3_ko_wt_down-160	chr4	64578935	64597817	+	0	NA	Intergenic	RLTR10C|LTR|ERVK	-535798	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
h3k27ac_ko_wt_down-165	chr8	7131296	7132569	+	0	NA	Intergenic	Intergenic	1528841	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k4me3_ko_wt_up-32	chr1	171078010	171078918	+	0	NA	Intergenic	Intergenic	-13812	NR_106103	102466998		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA
h3k4me3_ko_wt_up-92	chr2	168911874	168912913	+	0	NA	Intergenic	CpG	43194	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding
h3k27ac_ko_wt_down-295	chr15	52764297	52765378	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	52392	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
h3k27me3_het_wt_up-6	chr2	77983868	77987432	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-39294	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-4	chr1	15632174	15634109	+	0	NA	intron (NM_001098528, intron 1 of 1)	L1MA7|LINE|L1	-172505	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding
h3k27me3_ko_wt_up-474	chrX	94410874	94412513	+	0	NA	intron (NM_001199338, intron 7 of 8)	intron (NM_001199338, intron 7 of 8)	-31039	NR_045323	100503393	Mm.402891	NR_045323	ENSMUSG00000084904	Gm14827	OTTMUSG00000018126	predicted gene 14827	ncRNA
h3k27me3_ko_wt_up-269	chr11	102946723	102949682	+	0	NA	Intergenic	MIR|SINE|MIR	-1741	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding
h3k27me3_ko_wt_up-15	chr1	79223503	79225185	+	0	NA	Intergenic	Intergenic	215746	NM_001310680	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding
h3k4me3_ko_wt_up-569	chr19	55061323	55061865	+	0	NA	Intergenic	Intergenic	37853	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding
h3k27me3_ko_wt_up-327	chr14	78724359	78727471	+	0	NA	promoter-TSS (NM_001081336)	promoter-TSS (NM_001081336)	-826	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding
h3k27ac_het_wt_up-11	chr2	78005226	78006034	+	0	NA	Intergenic	Intergenic	-45547	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_up-58	chr2	77988580	77995791	+	0	NA	Intergenic	Intergenic	-45829	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_down-172	chr14	99297849	99301088	+	0	NA	intron (NM_009769, intron 1 of 3)	intron (NM_009769, intron 1 of 3)	777	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding
h3k4me3_ko_wt_up-492	chr16	59604259	59604923	+	0	NA	Intergenic	Intergenic	-32354	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA
h3k27me3_ko_wt_up-77	chr2	145291521	145296054	+	0	NA	intron (NM_053195, intron 2 of 16)	intron (NM_053195, intron 2 of 16)	51176	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding
h3k4me3_ko_wt_up-568	chr19	46304329	46305661	+	0	NA	promoter-TSS (NM_019408)	promoter-TSS (NM_019408)	258	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding
h3k27me3_ko_wt_up-59	chr2	78004106	78012774	+	0	NA	Intergenic	MLTR11B|LTR|ERVK	-42737	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k4me3_ko_wt_down-48	chr4	118289342	118291802	+	0	NA	intron (NM_011213, intron 1 of 32)	CpG	825	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding
h3k27ac_ko_wt_down-176	chr8	109359484	109361165	+	0	NA	Intergenic	Intergenic	-19416	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
h3k27me3_ko_wt_down-383	chr11	19713574	19715772	+	0	NA	Intergenic	Intergenic	-209769	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
h3k4me3_ko_wt_up-551	chr18	69575411	69578290	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	231129	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k4me3_het_wt_down-7	chr13	91370584	91371590	+	0	NA	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	16998	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
h3k4me3_ko_wt_up-73	chr2	105680652	105683514	+	0	NA	promoter-TSS (NM_001310146)	promoter-TSS (NM_001310146)	-380	NM_001310146	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding
h3k27me3_ko_wt_down-498	chr14	100443161	100445282	+	0	NA	Intergenic	L3b|LINE|CR1	-294425	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27ac_ko_wt_down-27	chr1	125893070	125893659	+	0	NA	intron (NM_001311090, intron 2 of 2)	intron (NM_001311090, intron 2 of 2)	18023	NM_001311090	72585	Mm.490405	NM_145100		Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding
h3k27me3_ko_wt_up-179	chr6	148622414	148622997	+	0	NA	Intergenic	Intergenic	-8396	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
h3k27me3_ko_wt_up-61	chr2	78022372	78027107	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-26438	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k4me3_ko_wt_up-172	chr4	150086922	150088181	+	0	NA	promoter-TSS (NM_177366)	promoter-TSS (NM_177366)	48	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding
h3k27me3_ko_wt_up-65	chr2	96054942	96057571	+	0	NA	Intergenic	Intergenic	-261913	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_down-118	chr9	109054816	109055679	+	0	NA	intron (NM_026381, intron 1 of 3)	intron (NM_026381, intron 1 of 3)	381	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding
h3k27me3_ko_wt_down-314	chr8	43390115	43391552	+	0	NA	Intergenic	Intergenic	-83824	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding
h3k4me3_ko_wt_down-210	chrX	119926736	119927968	+	0	NA	intron (NM_053114, intron 1 of 1)	CpG	156	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding
h3k27me3_ko_wt_down-519	chr15	32718871	32724000	+	0	NA	Intergenic	Intergenic	-199288	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding
h3k4me3_ko_wt_down-69	chr6	47780670	47782774	+	0	NA	Intergenic	HY3|scRNA|scRNA	21930	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA
h3k4me3_ko_wt_up-555	chr18	82405921	82407493	+	0	NA	promoter-TSS (NM_008082)	promoter-TSS (NM_008082)	70	NM_008082	14427	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding
h3k27me3_ko_wt_down-229	chr5	69080599	69081624	+	0	NA	Intergenic	Intergenic	260598	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding
h3k27ac_ko_wt_down-303	chr16	50059325	50060524	+	0	NA	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	12928	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
h3k27ac_ko_wt_up-54	chr2	116201337	116202190	+	0	NA	Intergenic	Intergenic	-125667	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA
h3k4me3_ko_wt_down-123	chr10	75558327	75560868	+	0	NA	intron (NM_198860, intron 1 of 3)	intron (NM_198860, intron 1 of 3)	733	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding
h3k4me3_ko_wt_up-27	chr1	155741811	155742952	+	0	NA	promoter-TSS (NM_010712)	promoter-TSS (NM_010712)	-354	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding
h3k27ac_ko_wt_down-240	chr13	12308187	12308883	+	0	NA	intron (NM_033268, intron 4 of 20)	intron (NM_033268, intron 4 of 20)	32197	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding
h3k4me3_ko_wt_up-114	chr3	67891934	67894489	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	991	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
h3k4me3_ko_wt_up-382	chr11	103192168	103193195	+	0	NA	exon (NM_001077698, exon 13 of 26)	exon (NM_001077698, exon 13 of 26)	15867	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding
h3k27ac_ko_wt_up-154	chr8	61355157	61356667	+	0	NA	intron (NM_021506, intron 6 of 11)	intron (NM_021506, intron 6 of 11)	-67040	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA
h3k27me3_ko_wt_down-417	chr12	81268996	81272138	+	0	NA	intron (NM_080440, intron 2 of 7)	ID_B1|SINE|B4	62613	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding
h3k27ac_ko_wt_up-93	chr4	9551080	9551757	+	0	NA	intron (NM_023066, intron 13 of 23)	intron (NM_023066, intron 13 of 23)	92299	NM_133723	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding
h3k27ac_ko_wt_up-33	chr2	72629205	72630548	+	0	NA	Intergenic	UCON11|Unknown|Unknown	-73634	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA
h3k4me3_ko_wt_up-273	chr8	12384218	12387558	+	0	NA	non-coding (NR_027975, exon 1 of 8)	non-coding (NR_027975, exon 1 of 8)	117	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA
h3k27ac_het_wt_up-4	chr2	77909263	77910603	+	0	NA	intron (NM_030560, intron 15 of 20)	intron (NM_030560, intron 15 of 20)	36423	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-360	chr11	66523669	66527702	+	0	NA	exon (NM_001034874, exon 1 of 5)	exon (NM_001034874, exon 1 of 5)	441	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879	shisa family member 6	protein-coding
h3k27ac_ko_wt_up-87	chr3	131919368	131920152	+	0	NA	Intergenic	Intergenic	-165532	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf homolog 2 (Xenopus laevis)	protein-coding
h3k27ac_ko_wt_down-148	chr7	49569481	49569748	+	0	NA	intron (NM_001111016, intron 23 of 38)	intron (NM_001111016, intron 23 of 38)	67221	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
h3k27me3_ko_wt_up-11	chr1	68996980	69000385	+	0	NA	intron (NM_010154, intron 1 of 26)	intron (NM_010154, intron 1 of 26)	109377	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
h3k4me3_het_wt_up-18	chr4	23826947	23828860	+	0	NA	Intergenic	Intergenic	-668559	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k27me3_ko_wt_up-303	chr13	59969526	59973183	+	0	NA	Intergenic	Intergenic	-58357	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA
h3k4me3_het_wt_up-19	chr4	62582982	62584200	+	0	NA	intron (NM_019492, intron 3 of 19)	CpG	23744	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
h3k27me3_ko_wt_up-146	chr6	16093548	16094379	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	373302	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27ac_ko_wt_up-19	chr1	83407130	83408565	+	0	NA	intron (NM_172430, intron 1 of 10)	intron (NM_172430, intron 1 of 10)	353	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
h3k27me3_ko_wt_up-522	chrX	169879205	169880261	+	0	NA	5' UTR (NM_001290506, exon 1 of 10)	5' UTR (NM_001290506, exon 1 of 10)	114	NM_001290506	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding
h3k4me3_ko_wt_up-518	chr17	47974234	47976556	+	0	NA	Intergenic	CpG	-50763	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding
h3k27ac_ko_wt_down-309	chr17	28522695	28522985	+	0	NA	Intergenic	CpG	-8021	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding
h3k4me3_ko_wt_down-129	chr10	127739191	127740763	+	0	NA	intron (NM_198035, intron 1 of 1)	CpG	439	NM_198035	320080	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding
h3k27me3_ko_wt_down-166	chr4	66375506	66381336	+	0	NA	intron (NM_207109, intron 1 of 22)	intron (NM_207109, intron 1 of 22)	26062	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27me3_ko_wt_down-422	chr12	89747318	89748898	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-64375	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27ac_ko_wt_down-224	chr12	41671919	41672186	+	0	NA	intron (NM_053122, intron 5 of 6)	intron (NM_053122, intron 5 of 6)	-185995	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
h3k27me3_ko_wt_down-471	chr13	117603190	117606197	+	0	NA	intron (NM_010408, intron 1 of 7)	intron (NM_010408, intron 1 of 7)	2373	NM_010408	15165	Mm.343429	NM_010408		Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding
h3k27ac_ko_wt_up-72	chr3	18096401	18097674	+	0	NA	intron (NM_007825, intron 3 of 5)	intron (NM_007825, intron 3 of 5)	42712	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding
h3k4me3_ko_wt_up-519	chr17	51760476	51761300	+	0	NA	intron (NM_009122, intron 9 of 10)	intron (NM_009122, intron 9 of 10)	51166	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
h3k27me3_ko_wt_up-248	chr10	93699877	93702123	+	0	NA	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-17678	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA
h3k27ac_ko_wt_up-193	chr10	118839989	118840573	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	28622	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding
h3k4me3_ko_wt_up-247	chr7	38183061	38184860	+	0	NA	intron (NM_028166, intron 1 of 3)	CpG	173	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding
h3k27me3_ko_wt_down-426	chr12	89821791	89825679	+	0	NA	intron (NM_001252074, intron 1 of 6)	intron (NM_001252074, intron 1 of 6)	11252	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_down-253	chr6	23864712	23866431	+	0	NA	Intergenic	Intergenic	-26150	NM_001252109	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding
h3k27me3_ko_wt_down-162	chr4	65652049	65654343	+	0	NA	intron (NM_207109, intron 13 of 22)	intron (NM_207109, intron 13 of 22)	48210	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding
h3k27me3_ko_wt_down-503	chr14	100715104	100716637	+	0	NA	Intergenic	Intergenic	484199	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding
h3k27me3_ko_wt_down-489	chr14	87340772	87343897	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-74249	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding
h3k27me3_ko_wt_down-350	chr10	24717786	24720096	+	0	NA	Intergenic	Intergenic	-6782	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding
h3k4me3_ko_wt_up-539	chr18	46574033	46574678	+	0	NA	5' UTR (NM_173394, exon 1 of 3)	5' UTR (NM_173394, exon 1 of 3)	178	NM_173394	225471	Mm.149280	NM_173394		Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding
h3k27ac_het_wt_down-2	chr6	128661518	128662151	+	0	NA	promoter-TSS (NM_053165)	promoter-TSS (NM_053165)	-551	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding
h3k4me3_ko_wt_up-521	chr17	56829775	56831687	+	0	NA	intron (NM_027787, intron 1 of 17)	intron (NM_027787, intron 1 of 17)	277	NM_009056	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding
h3k4me3_ko_wt_down-126	chr10	81024826	81026149	+	0	NA	promoter-TSS (NM_145217)	promoter-TSS (NM_145217)	-110	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding
h3k27me3_ko_wt_down-196	chr4	97925573	97926887	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	148604	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
h3k27me3_ko_wt_down-475	chr14	47081682	47084784	+	0	NA	intron (NM_001310544, intron 3 of 7)	intron (NM_001310544, intron 3 of 7)	14256	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding
h3k27ac_ko_wt_down-306	chr16	64163476	64164215	+	0	NA	Intergenic	Intergenic	-299688	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k27me3_ko_wt_down-74	chr2	85190679	85192718	+	0	NA	intron (NM_001033346, intron 2 of 2)	L2b|LINE|L2	5001	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding
h3k27me3_ko_wt_down-192	chr4	94149217	94160025	+	0	NA	Intergenic	L1MC3|LINE|L1	402175	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27ac_ko_wt_down-46	chr2	84948424	84949375	+	0	NA	intron (NM_021398, intron 8 of 12)	L1MA9|LINE|L1	12253	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding
h3k4me3_ko_wt_up-538	chr18	42394391	42395172	+	0	NA	intron (NM_138945, intron 1 of 1)	CpG	184	NM_138945	18998	Mm.488204	NM_138945		Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding
h3k4me3_ko_wt_down-22	chr2	126151592	126153169	+	0	NA	promoter-TSS (NM_029455)	promoter-TSS (NM_029455)	239	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding
h3k27me3_ko_wt_up-28	chr1	183050406	183051528	+	0	NA	Intergenic	Intergenic	96179	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding
h3k27ac_ko_wt_down-321	chr18	22248419	22249208	+	0	NA	Intergenic	Intergenic	-77417	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
h3k4me3_ko_wt_up-507	chr17	33817150	33818339	+	0	NA	exon (NM_030697, exon 3 of 11)	exon (NM_030697, exon 3 of 11)	6754	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding
h3k27me3_ko_wt_up-346	chr15	6335221	6339482	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37562	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k4me3_ko_wt_down-101	chr8	61514876	61516353	+	0	NA	intron (NM_001081390, intron 18 of 19)	intron (NM_001081390, intron 18 of 19)	27880	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding
h3k4me3_het_wt_up-21	chr5	30104694	30106707	+	0	NA	intron (NM_001256263, intron 1 of 2)	intron (NM_001256263, intron 1 of 2)	386	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding
h3k4me3_het_wt_up-39	chr17	35666625	35668233	+	0	NA	TTS (NM_010364)	TTS (NM_010364)	163	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding
h3k27me3_ko_wt_down-57	chr2	23216412	23217765	+	0	NA	intron (NM_027635, intron 3 of 10)	L1_Mus3|LINE|L1	9612	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding
h3k4me3_ko_wt_up-76	chr2	115852329	115857244	+	0	NA	Intergenic	Intergenic	209835	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding
h3k27ac_ko_wt_down-122	chr5	81969649	81971445	+	0	NA	Intergenic	Intergenic	828518	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
h3k4me3_ko_wt_up-349	chr11	19350692	19351563	+	0	NA	Intergenic	Intergenic	285852	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k27me3_het_wt_down-16	chrX	94235694	94238770	+	0	NA	intron (NM_001039061, intron 1 of 2)	MER45B|DNA|hAT-Tip100	2302	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27me3_ko_wt_up-461	chrX	94155523	94163186	+	0	NA	Intergenic	L1MB5|LINE|L1	-35947	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27ac_ko_wt_down-151	chr7	55142775	55143912	+	0	NA	intron (NM_178705, intron 5 of 11)	intron (NM_178705, intron 5 of 11)	308098	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
h3k4me3_het_wt_up-38	chr17	17345608	17346465	+	0	NA	Intergenic	CpG	-28296	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding
h3k27me3_ko_wt_up-29	chr1	183059999	183061809	+	0	NA	Intergenic	Intergenic	86653	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-31	chr1	183081819	183083141	+	0	NA	Intergenic	Intergenic	65077	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-103	chr3	101068748	101069700	+	0	NA	intron (NM_011197, intron 4 of 8)	L4_C_Mam|LINE|RTE-X	-39729	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding
h3k4me3_ko_wt_up-394	chr12	44044698	44045390	+	0	NA	Intergenic	Intergenic	165024	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
h3k4me3_ko_wt_up-348	chr11	9117993	9119441	+	0	NA	intron (NM_001159402, intron 1 of 8)	intron (NM_001159402, intron 1 of 8)	210	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding
h3k27me3_het_wt_down-12	chrX	94080932	94082424	+	0	NA	intron (NM_011768, intron 5 of 7)	intron (NM_011768, intron 5 of 7)	41729	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27ac_ko_wt_up-6	chr1	32649670	32650830	+	0	NA	intron (NM_133235, intron 8 of 8)	intron (NM_133235, intron 8 of 8)	-102957	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding
h3k27me3_ko_wt_up-233	chr10	61272476	61274242	+	0	NA	promoter-TSS (NM_001081127)	promoter-TSS (NM_001081127)	79	NM_001081127	237360	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding
h3k4me3_ko_wt_down-137	chr11	74637646	74638938	+	0	NA	exon (NM_001013784, exon 4 of 4)	exon (NM_001013784, exon 4 of 4)	-11203	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding
h3k27me3_ko_wt_down-587	chr18	6159825	6162671	+	0	NA	Intergenic	Intergenic	-25150	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
h3k4me3_ko_wt_up-35	chr1	172499967	172501395	+	0	NA	intron (NM_178598, intron 1 of 4)	CpG	435	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding
h3k4me3_ko_wt_up-95	chr2	170220760	170221642	+	0	NA	Intergenic	Intergenic	-78526	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding
h3k27ac_ko_wt_up-31	chr2	4918705	4919479	+	0	NA	promoter-TSS (NM_010726)	promoter-TSS (NM_010726)	96	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding
h3k27ac_ko_wt_up-91	chr3	155416540	155417745	+	0	NA	Intergenic	Intergenic	323708	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding
h3k27ac_ko_wt_up-20	chr1	85528741	85529125	+	0	NA	Intergenic	Intergenic	69877	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding
h3k4me3_ko_wt_up-470	chr15	99093465	99094170	+	0	NA	Intergenic	CpG	-5667	NM_176835	72778	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ (Hsp40) homolog, subfamily C, member 22	protein-coding
h3k27ac_ko_wt_up-102	chr4	36597544	36598164	+	0	NA	intron (NM_001166000, intron 1 of 8)	intron (NM_001166000, intron 1 of 8)	47599	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA
h3k4me3_ko_wt_up-134	chr4	11703735	11705357	+	0	NA	promoter-TSS (NM_010276)	promoter-TSS (NM_010276)	99	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding
h3k4me3_ko_wt_up-446	chr14	62561912	62562682	+	0	NA	intron (NM_001243857, intron 1 of 3)	intron (NM_001243857, intron 1 of 3)	6560	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding
h3k27ac_ko_wt_up-284	chrX	18163192	18164670	+	0	NA	intron (NM_001310444, intron 2 of 28)	intron (NM_001310444, intron 2 of 28)	1356	NM_009483	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding
h3k4me3_ko_wt_down-185	chr17	14278934	14280925	+	0	NA	intron (NM_022315, intron 1 of 12)	intron (NM_022315, intron 1 of 12)	423	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding
h3k27ac_ko_wt_up-203	chr12	106080938	106081857	+	0	NA	Intergenic	Intergenic	71134	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding
h3k27me3_ko_wt_down-286	chr7	102518674	102521720	+	0	NA	Intergenic	Intergenic	-14552	NM_147079	259083	Mm.377828	NM_147079	ENSMUSG00000073979	Olfr547	MOR31-4	olfactory receptor 547	protein-coding
h3k4me3_ko_wt_up-80	chr2	119742016	119743566	+	0	NA	exon (NM_146125, exon 1 of 7)	exon (NM_146125, exon 1 of 7)	454	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding
h3k4me3_ko_wt_up-353	chr11	33842184	33843890	+	0	NA	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	548	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding
h3k27me3_ko_wt_down-132	chr3	145847473	145850476	+	0	NA	intron (NM_026993, intron 2 of 5)	L1Md_F2|LINE|L1	-75288	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding
h3k27me3_ko_wt_down-136	chr3	153075508	153077467	+	0	NA	Intergenic	Intergenic	75621	NR_108044	75001		NR_108044		4930482G09Rik	-	RIKEN cDNA 4930482G09 gene	ncRNA
h3k27me3_ko_wt_down-282	chr7	73399117	73400333	+	0	NA	intron (NM_177740, intron 2 of 3)	intron (NM_177740, intron 2 of 3)	-23951	NR_040325	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA
h3k27me3_ko_wt_up-379	chr16	18620374	18622962	+	0	NA	TTS (NM_213614)	TTS (NM_213614)	735	NM_010327	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding
h3k27me3_ko_wt_down-128	chr3	145739478	145744562	+	0	NA	Intergenic	Intergenic	-16672	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k27me3_ko_wt_down-2	chr1	14139179	14140500	+	0	NA	Intergenic	Intergenic	170360	NM_001252192	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	eyes absent 1 homolog (Drosophila)	protein-coding
h3k4me3_ko_wt_down-8	chr1	138345839	138346654	+	0	NA	Intergenic	Intergenic	72508	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding
h3k27ac_ko_wt_down-179	chr9	14058474	14059883	+	0	NA	Intergenic	Intergenic	-217123	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding
h3k27me3_ko_wt_down-130	chr3	145762384	145768461	+	0	NA	intron (NM_026993, intron 1 of 5)	intron (NM_026993, intron 1 of 5)	6730	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k4me3_ko_wt_down-33	chr3	90446149	90446998	+	0	NA	Intergenic	Intergenic	-12937	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding
h3k4me3_ko_wt_up-71	chr2	98666598	98667103	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	1199193	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27ac_ko_wt_up-75	chr3	37687165	37687710	+	0	NA	Intergenic	Intergenic	36923	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
h3k4me3_ko_wt_down-9	chr1	170907060	170909017	+	0	NA	exon (NM_001029984, exon 5 of 6)	exon (NM_001029984, exon 5 of 6)	4903	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding
h3k27me3_ko_wt_down-280	chr7	73303774	73306338	+	0	NA	Intergenic	Intergenic	-5324	NR_105062	100505025	Mm.445959	NR_105062		LOC100505025	-	uncharacterized LOC100505025	ncRNA
h3k4me3_ko_wt_up-190	chr5	115214766	115215738	+	0	NA	Intergenic	Intergenic	-20599	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-468	chr13	115902755	115906082	+	0	NA	Intergenic	Intergenic	405270	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
h3k27me3_ko_wt_down-404	chr12	46660811	46670160	+	0	NA	Intergenic	Intergenic	153290	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k27me3_ko_wt_down-307	chr8	36154043	36159976	+	0	NA	Intergenic	Intergenic	62181	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	D8Ertd82e	9830148H23|NACK|Sgk223|mFLJ00269	DNA segment, Chr 8, ERATO Doi 82, expressed	protein-coding
h3k27ac_ko_wt_down-231	chr12	65362418	65362858	+	0	NA	Intergenic	Intergenic	137121	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding
h3k27ac_ko_wt_down-207	chr10	96755256	96755910	+	0	NA	Intergenic	Intergenic	138582	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding
h3k27me3_ko_wt_up-222	chr9	93001790	93004797	+	0	NA	intron (NR_040756, intron 2 of 3)	intron (NR_040756, intron 2 of 3)	2440	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA
h3k27ac_ko_wt_down-79	chr3	127248593	127249251	+	0	NA	Intergenic	Intergenic	87617	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA
h3k27me3_ko_wt_up-127	chr5	35276588	35282330	+	0	NA	5' UTR (NM_007418, exon 1 of 1)	5' UTR (NM_007418, exon 1 of 1)	893	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding
h3k27me3_ko_wt_up-35	chr1	184081930	184083416	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	48212	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding
h3k27ac_ko_wt_up-124	chr6	6163514	6163747	+	0	NA	intron (NM_001177572, intron 3 of 17)	intron (NM_001177572, intron 3 of 17)	53543	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding
h3k4me3_ko_wt_up-40	chr1	181355750	181357758	+	0	NA	intron (NM_028408, intron 1 of 5)	intron (NM_028408, intron 1 of 5)	4126	NM_001160212	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon homolog 3 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-173	chr4	68616946	68619646	+	0	NA	Intergenic	Intergenic	336101	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding
h3k27ac_ko_wt_up-246	chr16	4718546	4719557	+	0	NA	5' UTR (NM_026393, exon 1 of 6)	5' UTR (NM_026393, exon 1 of 6)	305	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding
h3k4me3_het_wt_up-25	chr8	105965247	105966365	+	0	NA	intron (NM_009195, intron 1 of 23)	CpG	309	NR_045594	20498	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding
h3k4me3_ko_wt_up-576	chrX	50602602	50603044	+	0	NA	intron (NR_015505, intron 8 of 19)	intron (NR_015505, intron 8 of 19)	32498	NR_015505	103012	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA
h3k4me3_ko_wt_up-484	chr16	25058609	25059873	+	0	NA	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-398	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
h3k27me3_ko_wt_down-244	chr5	100507134	100508104	+	0	NA	Intergenic	Intergenic	-6980	NM_172714	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	4832414L08|AI461788|mKIAA2037	lin-54 homolog (C. elegans)	protein-coding
h3k27me3_het_wt_down-10	chrX	13272769	13276675	+	0	NA	Intergenic	Intergenic	-6300	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding
h3k4me3_ko_wt_up-540	chr18	49117375	49118313	+	0	NA	Intergenic	Intergenic	-405445	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA
h3k27ac_ko_wt_up-270	chr18	25582766	25583806	+	0	NA	intron (NM_001146292, intron 2 of 12)	intron (NM_001146292, intron 2 of 12)	170697	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_down-352	chr10	37288393	37290072	+	0	NA	Intergenic	Intergenic	-150306	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding
h3k4me3_ko_wt_up-403	chr12	108327418	108328777	+	0	NA	exon (NM_001044380, exon 9 of 9)	exon (NM_001044380, exon 9 of 9)	-6284	NM_010010	13116	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding
h3k27me3_ko_wt_down-190	chr4	94129989	94131445	+	0	NA	Intergenic	L1_Mur3|LINE|L1	426079	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27ac_ko_wt_down-5	chr1	25085506	25086523	+	0	NA	intron (NM_175642, intron 28 of 30)	intron (NM_175642, intron 28 of 30)	191940	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
h3k27ac_ko_wt_down-173	chr8	66722000	66724336	+	0	NA	Intergenic	L1ME3B|LINE|L1	25746	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding
h3k4me3_ko_wt_up-330	chr10	69398383	69400189	+	0	NA	Intergenic	CpG	-46374	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding
h3k4me3_het_wt_up-40	chr17	36110726	36111881	+	0	NA	exon (NM_001271005, exon 2 of 7)	exon (NM_001271005, exon 2 of 7)	373	NM_001271005	667803	Mm.477808	NM_001271005		C920025E04Rik	H2-T11	RIKEN cDNA C920025E04 gene	protein-coding
h3k27ac_ko_wt_up-96	chr4	17932080	17932473	+	0	NA	intron (NM_019724, intron 1 of 9)	intron (NM_019724, intron 1 of 9)	78794	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
h3k27me3_ko_wt_down-356	chr10	99697375	99701411	+	0	NA	Intergenic	Intergenic	-57473	NR_038018	100417125	Mm.391428	NR_038018		Gm18409	-	mediator of cell motility 1 pseudogene	pseudo
h3k27ac_ko_wt_up-36	chr2	75247958	75249280	+	0	NA	Intergenic	Intergenic	195560	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA
h3k4me3_ko_wt_up-525	chr17	84184888	84185740	+	0	NA	3' UTR (NM_001001806, exon 2 of 2)	3' UTR (NM_001001806, exon 2 of 2)	2633	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding
h3k27me3_ko_wt_up-430	chr19	25273723	25276603	+	0	NA	intron (NM_181404, intron 2 of 13)	RMER15|LTR|ERVL	37961	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding
h3k27me3_ko_wt_down-53	chr1	195232094	195236777	+	0	NA	Intergenic	Intergenic	-57720	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding
h3k4me3_ko_wt_up-322	chr10	30980190	30980739	+	0	NA	Intergenic	Intergenic	-137681	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding
h3k27me3_ko_wt_down-214	chr5	22139559	22140904	+	0	NA	intron (NM_001310464, intron 6 of 63)	intron (NM_001310464, intron 6 of 63)	204474	NM_011261	19699	Mm.425236	NM_011261	ENSMUSG00000042453	Reln	reeler|rl	reelin	protein-coding
h3k27me3_ko_wt_up-449	chrX	13345385	13348100	+	0	NA	Intergenic	Intergenic	65720	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding
h3k27me3_ko_wt_down-524	chr15	51677913	51688155	+	0	NA	Intergenic	RMER4B|LTR|ERVK	182427	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding
h3k4me3_ko_wt_up-454	chr14	104336815	104337154	+	0	NA	Intergenic	(CGGAA)n|Simple_repeat|Simple_repeat	131015	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding
h3k27me3_ko_wt_down-329	chr8	64549324	64551720	+	0	NA	Intergenic	Lx9|LINE|L1	-36081	NR_030491	735270		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA
h3k27me3_ko_wt_up-42	chr2	31469243	31471196	+	0	NA	promoter-TSS (NR_002687)	promoter-TSS (NR_002687)	-51	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding
h3k4me3_ko_wt_down-133	chr11	48825929	48827074	+	0	NA	intron (NM_053166, intron 1 of 6)	intron (NM_053166, intron 1 of 6)	363	NM_053166	94089	Mm.390335	NM_053166		Trim7	AI790312	tripartite motif-containing 7	protein-coding
h3k27me3_ko_wt_down-617	chr19	17605202	17606965	+	0	NA	intron (NM_001190483, intron 10 of 37)	intron (NM_001190483, intron 10 of 37)	212040	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding
h3k27me3_ko_wt_up-150	chr6	27981514	27985315	+	0	NA	intron (NM_008174, intron 2 of 10)	intron (NM_008174, intron 2 of 10)	-46664	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
h3k27ac_ko_wt_down-298	chr16	12799802	12800991	+	0	NA	Intergenic	Intergenic	-10994	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
h3k4me3_ko_wt_up-264	chr7	126762169	126763072	+	0	NA	intron (NM_011952, intron 2 of 8)	intron (NM_011952, intron 2 of 8)	2994	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding
h3k27me3_ko_wt_down-435	chr12	106477317	106482575	+	0	NA	Intergenic	Intergenic	-32280	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
h3k27ac_ko_wt_down-260	chr13	108524188	108525869	+	0	NA	Intergenic	Intergenic	-129149	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
h3k27ac_ko_wt_down	chr1	6289619	6290658	+	0	NA	Intergenic	Intergenic	-69193	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding
h3k27ac_ko_wt_down-168	chr8	39092346	39094016	+	0	NA	intron (NM_030254, intron 5 of 7)	intron (NM_030254, intron 5 of 7)	87314	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
h3k4me3_ko_wt_up-100	chr2	177205543	177206769	+	0	NA	Intergenic	RMER17B|LTR|ERVK	-258586	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
h3k27ac_ko_wt_down-190	chr9	94441741	94442334	+	0	NA	Intergenic	Intergenic	96044	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
h3k4me3_ko_wt_up-493	chr16	91224934	91226433	+	0	NA	intron (NM_016967, intron 1 of 1)	CpG	133	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
h3k27me3_ko_wt_up-337	chr14	123203285	123204024	+	0	NA	Intergenic	Intergenic	34468	NR_045143	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k27me3_ko_wt_down-172	chr4	67594050	67599359	+	0	NA	Intergenic	L1_Mur3|LINE|L1	769153	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding
h3k27me3_ko_wt_up-195	chr7	142370771	142373294	+	0	NA	intron (NM_177265, intron 1 of 3)	intron (NM_177265, intron 1 of 3)	227	NM_177265	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding
h3k27me3_ko_wt_up-302	chr13	57107235	57109401	+	0	NA	Intergenic	Intergenic	-212529	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding
h3k27me3_ko_wt_down-121	chr3	127894095	127895342	+	0	NA	intron (NM_027482, intron 1 of 1)	intron (NM_027482, intron 1 of 1)	1605	NM_027482	70617	Mm.317049	NM_027482		5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding
h3k27me3_ko_wt_down-495	chr14	98047372	98050125	+	0	NA	intron (NM_007826, intron 1 of 11)	intron (NM_007826, intron 1 of 11)	121017	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-176	chr4	72190724	72193445	+	0	NA	intron (NM_001285530, intron 4 of 17)	intron (NM_001285530, intron 4 of 17)	8809	NM_001285531	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1, homolog of Drosophila E(spl)	protein-coding
h3k27me3_ko_wt_down-461	chr13	102134068	102136628	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-367131	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding
h3k27ac_ko_wt_up-78	chr3	62338719	62340749	+	0	NA	exon (NM_001081295, exon 1 of 14)	exon (NM_001081295, exon 1 of 14)	957	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding
h3k27me3_ko_wt_up-144	chr6	16088294	16089191	+	0	NA	Intergenic	Intergenic	368081	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27me3_ko_wt_up-185	chr7	66281938	66284391	+	0	NA	intron (NM_146191, intron 21 of 33)	intron (NM_146191, intron 21 of 33)	98560	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA
h3k4me3_ko_wt_down-139	chr11	94209537	94210985	+	0	NA	Intergenic	CpG	-1193	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding
h3k27ac_ko_wt_down-234	chr12	73715954	73716722	+	0	NA	intron (NM_001313977, intron 10 of 14)	intron (NM_001313977, intron 10 of 14)	131542	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
h3k4me3_ko_wt_up-49	chr2	26501753	26504123	+	0	NA	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	884	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding
h3k27me3_ko_wt_down-353	chr10	56979419	56981142	+	0	NA	Intergenic	Intergenic	506073	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA
h3k27me3_ko_wt_down-59	chr2	48627057	48630579	+	0	NA	Intergenic	MIRb|SINE|MIR	-185291	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
h3k27ac_ko_wt_down-37	chr2	33085786	33086780	+	0	NA	intron (NM_178888, intron 1 of 28)	intron (NM_178888, intron 1 of 28)	921	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding
h3k4me3_ko_wt_up-98	chr2	172938851	172940825	+	0	NA	exon (NM_007557, exon 1 of 7)	exon (NM_007557, exon 1 of 7)	483	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding
h3k27me3_ko_wt_up-482	chrX	103391021	103392076	+	0	NA	3' UTR (NM_009767, exon 6 of 6)	3' UTR (NM_009767, exon 6 of 6)	-22919	NM_009440	22127	Mm.358644	NM_009440	ENSMUSG00000031329	Tsx	AV207184	testis specific X-linked gene	protein-coding
h3k4me3_ko_wt_up-38	chr1	180225818	180226445	+	0	NA	TTS (NM_001128605)	TTS (NM_001128605)	19819	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding
h3k27me3_ko_wt_down-620	chrX	68509272	68511419	+	0	NA	Intergenic	Intergenic	168054	NR_033481	100038638	Mm.368431	NR_033481	ENSMUSG00000096946	Fmr1os	Asfmr1|ENSMUSG00000073146|Gm10474	fragile X mental retardation syndrome 1, opposite strand	ncRNA
h3k4me3_ko_wt_up-173	chr4	154170388	154171746	+	0	NA	exon (NM_001162977, exon 1 of 37)	exon (NM_001162977, exon 1 of 37)	354	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding
h3k27me3_ko_wt_down-193	chr4	94162701	94164811	+	0	NA	Intergenic	Intergenic	393040	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding
h3k27ac_ko_wt_down-203	chr10	43630781	43632708	+	0	NA	TTS (NR_033558)	TTS (NR_033558)	38317	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
h3k27ac_ko_wt_up-254	chr16	78019838	78020403	+	0	NA	Intergenic	Intergenic	235334	NR_045698	100503619	Mm.387531	NR_045698		E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA
h3k4me3_ko_wt_down-115	chr9	76014393	76016164	+	0	NA	intron (NM_173731, intron 1 of 8)	intron (NM_173731, intron 1 of 8)	301	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding
h3k4me3_ko_wt_up-214	chr6	38353841	38354819	+	0	NA	5' UTR (NM_028421, exon 1 of 12)	5' UTR (NM_028421, exon 1 of 12)	273	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding
h3k4me3_ko_wt_up-304	chr9	37367653	37369080	+	0	NA	intron (NM_175189, intron 1 of 6)	intron (NM_175189, intron 1 of 6)	760	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding
h3k27me3_ko_wt_up-492	chrX	103795094	103796584	+	0	NA	intron (NM_009197, intron 1 of 5)	intron (NM_009197, intron 1 of 5)	26149	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding
h3k4me3_ko_wt_up-383	chr11	103332780	103333976	+	0	NA	exon (NM_001205236, exon 16 of 18)	exon (NM_001205236, exon 16 of 18)	11324	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding
h3k27ac_ko_wt_down-145	chr6	129048492	129050161	+	0	NA	intron (NR_024262, intron 1 of 5)	intron (NR_024262, intron 1 of 5)	3425	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding
h3k4me3_ko_wt_up-17	chr1	86531443	86532771	+	0	NA	Intergenic	Intergenic	5371	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding
h3k27me3_het_wt_down-13	chrX	94147399	94151225	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-25905	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_down-170	chr4	66552693	66555884	+	0	NA	Intergenic	Intergenic	-149805	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27me3_ko_wt_up-476	chrX	100228981	100229985	+	0	NA	intron (NM_010099, intron 1 of 7)	intron (NM_010099, intron 1 of 7)	-151614	NR_030525	751534		NR_030525	ENSMUSG00000076398	Mir676	Mirn676|mir-676|mmu-mir-676	microRNA 676	ncRNA
h3k4me3_ko_wt_up-272	chr8	11477912	11478551	+	0	NA	non-coding (NR_126558, exon 1 of 2)	non-coding (NR_126558, exon 1 of 2)	268	NM_011227	19332	Mm.37632	NM_011227		Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding
h3k4me3_ko_wt_up-89	chr2	164389052	164389898	+	0	NA	TTS (NM_001252563)	TTS (NM_001252563)	-13719	NM_009036	19668	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding
h3k4me3_ko_wt_up-147	chr4	63214270	63216527	+	0	NA	promoter-TSS (NM_025685)	promoter-TSS (NM_025685)	-14	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266|mKIAA1870	collagen, type XXVII, alpha 1	protein-coding
h3k27ac_ko_wt_down-177	chr8	121296551	121297414	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	169297	NM_008024	14241	Mm.5111	NM_008024	ENSMUSG00000097084	Foxl1	FREAC7|Fkh6|fkh-6	forkhead box L1	protein-coding
h3k27me3_ko_wt_up-507	chrX	152183235	152185487	+	0	NA	intron (NM_001005475, intron 2 of 13)	B1_Mur4|SINE|Alu	5352	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding
h3k27me3_ko_wt_down-71	chr2	82575741	82578549	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	523487	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding
h3k27me3_ko_wt_up-515	chrX	157304627	157306664	+	0	NA	intron (NM_011077, intron 12 of 21)	intron (NM_011077, intron 12 of 21)	109641	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding
h3k27me3_ko_wt_up-110	chr3	149190178	149190965	+	0	NA	Intergenic	Intergenic	-84166	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
h3k27me3_ko_wt_up-468	chrX	94264577	94269012	+	0	NA	intron (NM_001039061, intron 2 of 2)	intron (NM_001039061, intron 2 of 2)	-7780	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27me3_ko_wt_down-283	chr7	93830319	93833057	+	0	NA	Intergenic	Intergenic	751809	NM_021427	58238	Mm.113787	NM_021427		Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding
h3k27ac_ko_wt_up-29	chr1	168284168	168285097	+	0	NA	intron (NM_183355, intron 2 of 8)	intron (NM_183355, intron 2 of 8)	147537	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding
h3k27ac_ko_wt_down-154	chr7	69276037	69277785	+	0	NA	Intergenic	Intergenic	-219183	NR_045940	73796	Mm.410832	NR_045940		4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA
h3k27ac_ko_wt_down-324	chr18	31179883	31180809	+	0	NA	intron (NM_009065, intron 3 of 4)	MamTip2|DNA|hAT-Tip100	136782	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
h3k4me3_ko_wt_down-104	chr8	85071485	85072748	+	0	NA	intron (NM_001039514, intron 1 of 8)	CpG	359	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding
h3k27ac_ko_wt_down-209	chr10	98624797	98625568	+	0	NA	Intergenic	Intergenic	-273315	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
h3k27ac_ko_wt_up-5	chr1	22847757	22848838	+	0	NA	Intergenic	Intergenic	-42573	NM_001012625	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
h3k27me3_ko_wt_down-133	chr3	145851090	145855040	+	0	NA	intron (NM_026993, intron 3 of 5)	intron (NM_026993, intron 3 of 5)	-71197	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding
h3k27ac_ko_wt_up-192	chr10	117982337	117983291	+	0	NA	Intergenic	Intergenic	57355	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA
h3k27me3_ko_wt_up-241	chr10	73094964	73098768	+	0	NA	Intergenic	Intergenic	-10161	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA
h3k27ac_ko_wt_down-206	chr10	96263471	96264089	+	0	NA	Intergenic	Intergenic	37573	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA
h3k27me3_ko_wt_down-3	chr1	14297283	14299288	+	0	NA	intron (NM_001252192, intron 2 of 16)	intron (NM_001252192, intron 2 of 16)	11914	NM_001252192	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	eyes absent 1 homolog (Drosophila)	protein-coding
h3k27me3_ko_wt_up-96	chr3	42531413	42532360	+	0	NA	Intergenic	Intergenic	789268	NM_028667	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding
h3k4me3_ko_wt_down-32	chr3	88830494	88832820	+	0	NA	intron (NR_015498, intron 1 of 1)	intron (NR_015498, intron 1 of 1)	830	NR_015498	319830	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA
h3k27me3_ko_wt_down-604	chr18	62914545	62916190	+	0	NA	Intergenic	Intergenic	-6960	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding
h3k27ac_ko_wt_down-10	chr1	31454021	31454508	+	0	NA	Intergenic	Intergenic	189417	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
h3k27me3_ko_wt_down-459	chr13	94543218	94545325	+	0	NA	intron (NM_009680, intron 25 of 26)	intron (NM_009680, intron 25 of 26)	185311	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding
h3k27me3_ko_wt_down-380	chr11	19275807	19278599	+	0	NA	Intergenic	L1ME1|LINE|L1	211928	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k4me3_ko_wt_down-15	chr2	51934229	51935610	+	0	NA	promoter-TSS (NM_030243)	promoter-TSS (NM_030243)	90	NM_030243	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding
h3k27me3_ko_wt_down-207	chr4	141928656	141930320	+	0	NA	intron (NM_177868, intron 17 of 31)	intron (NM_177868, intron 17 of 31)	-53504	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA
h3k27me3_ko_wt_up-310	chr13	109311025	109313310	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-12577	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA
h3k27me3_ko_wt_down-557	chr16	86538427	86539078	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-637627	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
h3k27me3_ko_wt_up-290	chr13	7512633	7516564	+	0	NA	Intergenic	Intergenic	-688268	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27ac_ko_wt_down-252	chr13	82130090	82130825	+	0	NA	Intergenic	Intergenic	347165	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
h3k4me3_ko_wt_down-202	chr19	4037306	4038405	+	0	NA	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	57	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding
h3k27me3_ko_wt_down-478	chr14	47376352	47377418	+	0	NA	intron (NM_001145953, intron 1 of 5)	intron (NM_001145953, intron 1 of 5)	3025	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding
h3k27ac_ko_wt_down-221	chr12	21439316	21440010	+	0	NA	Intergenic	Intergenic	-22227	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding
h3k27me3_ko_wt_up-280	chr12	53911215	53913483	+	0	NA	intron (NM_013780, intron 5 of 11)	B1_Mus1|SINE|Alu	291525	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
h3k27me3_ko_wt_up-223	chr9	94194386	94195618	+	0	NA	Intergenic	Intergenic	343079	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
h3k4me3_het_wt_down-21	chrX	103480448	103484121	+	0	NA	non-coding (NR_002844, exon 4 of 4)	non-coding (NR_002844, exon 4 of 4)	949	NR_001463	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA
h3k27me3_ko_wt_up-255	chr11	64244986	64247621	+	0	NA	Intergenic	Intergenic	166819	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA
h3k27ac_ko_wt_up-64	chr2	144753960	144754375	+	0	NA	intron (NM_025314, intron 5 of 5)	L1MCa|LINE|L1	-69499	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding
h3k27ac_ko_wt_up-103	chr4	70437678	70438415	+	0	NA	intron (NM_172694, intron 4 of 5)	intron (NM_172694, intron 4 of 5)	-27611	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
h3k4me3_ko_wt_up-585	chrX	136214440	136215392	+	0	NA	5' UTR (NM_009052, exon 2 of 3)	5' UTR (NM_009052, exon 2 of 3)	597	NM_009052	19716	Mm.422943	NM_009052	ENSMUSG00000050071	Bex1	AA407839|AU018692|Bex4|Rex3	brain expressed gene 1	protein-coding
h3k27me3_ko_wt_down-344	chr10	18468449	18469517	+	0	NA	promoter-TSS (NM_001163592)	promoter-TSS (NM_001163592)	-998	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding
h3k27me3_ko_wt_down-549	chr16	83689109	83693763	+	0	NA	Intergenic	Intergenic	-679707	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k27ac_ko_wt_up-184	chr10	58871083	58872394	+	0	NA	intron (NM_172788, intron 1 of 9)	intron (NM_172788, intron 1 of 9)	58379	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
h3k27me3_ko_wt_down-163	chr4	66314688	66316081	+	0	NA	intron (NM_207109, intron 1 of 22)	intron (NM_207109, intron 1 of 22)	89099	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k27me3_ko_wt_up-405	chr17	59146946	59149321	+	0	NA	Intergenic	Intergenic	-134811	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
h3k27me3_ko_wt_down-502	chr14	100473244	100482492	+	0	NA	Intergenic	Intergenic	-328072	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k4me3_ko_wt_up-234	chr6	136554994	136555802	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36547	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
h3k4me3_ko_wt_up-352	chr11	31948997	31949649	+	0	NA	Intergenic	Intergenic	-16310	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding
h3k27me3_ko_wt_down-447	chr13	15473360	15476856	+	0	NA	intron (NM_008130, intron 1 of 14)	intron (NM_008130, intron 1 of 14)	11385	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding
h3k27me3_ko_wt_down-252	chr6	15761213	15765061	+	0	NA	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	42476	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27me3_ko_wt_up-417	chr18	65872586	65875540	+	0	NA	intron (NM_175012, intron 1 of 2)	intron (NM_175012, intron 1 of 2)	577	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding
h3k27ac_ko_wt_up-202	chr12	51190446	51191148	+	0	NA	Intergenic	Intergenic	-157433	NM_001015099	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
h3k4me3_ko_wt_up-424	chr13	83986778	83988262	+	0	NA	Intergenic	Intergenic	77254	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
h3k27ac_ko_wt_up-10	chr1	51607508	51608444	+	0	NA	Intergenic	Intergenic	-129577	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
h3k27me3_ko_wt_down-423	chr12	89769569	89773775	+	0	NA	intron (NM_172544, intron 14 of 19)	intron (NM_172544, intron 14 of 19)	-40811	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_down-256	chr6	67048429	67050790	+	0	NA	intron (NR_040278, intron 1 of 6)	intron (NR_040278, intron 1 of 6)	-12202	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding
h3k4me3_ko_wt_down-188	chr17	23790021	23791232	+	0	NA	Intergenic	CpG	-4549	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding
h3k27me3_ko_wt_down-506	chr14	104637430	104640649	+	0	NA	promoter-TSS (NR_015593)	promoter-TSS (NR_015593)	-108	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA
h3k27ac_ko_wt_down-95	chr4	35844409	35845561	+	0	NA	intron (NM_175516, intron 1 of 2)	intron (NM_175516, intron 1 of 2)	219	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding
h3k27me3_ko_wt_down-500	chr14	100460608	100466848	+	0	NA	Intergenic	Lx9|LINE|L1	-313932	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27me3_ko_wt_down-250	chr6	4553510	4555051	+	0	NA	Intergenic	Intergenic	-46786	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding
h3k27me3_ko_wt_up-88	chr2	169493045	169494835	+	0	NA	Intergenic	Intergenic	-139706	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
h3k27ac_het_wt_down-3	chr17	6489937	6490300	+	0	NA	Intergenic	Intergenic	-39124	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo
h3k4me3_ko_wt_down-90	chr7	112841233	112842539	+	0	NA	intron (NM_001166585, intron 2 of 10)	intron (NM_001166585, intron 2 of 10)	82502	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding
h3k4me3_ko_wt_down-136	chr11	70524830	70526409	+	0	NA	intron (NM_008946, intron 1 of 5)	intron (NM_008946, intron 1 of 5)	262	NM_008946	19175	Mm.98	NM_008946		Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding
h3k27ac_ko_wt_down-85	chr4	13586245	13587088	+	0	NA	Intergenic	Intergenic	-156636	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
h3k27me3_ko_wt_up-89	chr2	169557740	169560868	+	0	NA	Intergenic	L1M5|LINE|L1	-74342	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
h3k27me3_ko_wt_down-56	chr2	19515802	19518943	+	0	NA	intron (NM_027600, intron 6 of 16)	intron (NM_027600, intron 6 of 16)	36538	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding
h3k27ac_ko_wt_down-44	chr2	58176326	58177452	+	0	NA	non-coding (NR_045895, exon 4 of 4)	non-coding (NR_045895, exon 4 of 4)	12915	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA
h3k27me3_ko_wt_up-457	chrX	94127031	94128531	+	0	NA	Intergenic	L1MC5|LINE|L1	-4374	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k4me3_ko_wt_down-23	chr2	127207855	127209320	+	0	NA	promoter-TSS (NM_198630)	promoter-TSS (NM_198630)	183	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding
h3k4me3_ko_wt_down-80	chr7	24174611	24175609	+	0	NA	promoter-TSS (NM_001029933)	promoter-TSS (NM_001029933)	65	NM_001029933	232966	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding
h3k27ac_ko_wt_down-331	chr19	28452669	28454312	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-224734	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
h3k27me3_ko_wt_up-385	chr16	34744200	34746507	+	0	NA	Intergenic	CpG	-39597	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding
h3k4me3_ko_wt_up-290	chr8	83740956	83741645	+	0	NA	promoter-TSS (NM_001163029)	promoter-TSS (NM_001163029)	11	NM_001163030	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
h3k27me3_ko_wt_down-125	chr3	145635251	145637444	+	0	NA	Intergenic	MLT1H2|LTR|ERVL-MaLR	13638	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding
h3k27ac_ko_wt_down-132	chr6	36775647	36778027	+	0	NA	intron (NM_008973, intron 1 of 4)	intron (NM_008973, intron 1 of 4)	34524	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
h3k4me3_ko_wt_down-41	chr4	20007771	20009086	+	0	NA	promoter-TSS (NM_015767)	promoter-TSS (NM_015767)	0	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding
h3k27me3_ko_wt_up-344	chr15	6324217	6325536	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	25087	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k4me3_ko_wt_up-581	chrX	100776676	100778596	+	0	NA	intron (NM_001177780, intron 1 of 11)	intron (NM_001177780, intron 1 of 11)	365	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-137	chr5	113343929	113349153	+	0	NA	Intergenic	Intergenic	-8896	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA
h3k27me3_ko_wt_up-102	chr3	86749590	86751468	+	0	NA	intron (NM_001077688, intron 51 of 54)	intron (NM_001077688, intron 51 of 54)	170355	NM_001195497	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
h3k27me3_ko_wt_up-215	chr9	56620398	56622264	+	0	NA	intron (NM_181074, intron 3 of 3)	intron (NM_181074, intron 3 of 3)	14317	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding
h3k27me3_ko_wt_up-395	chr16	91190316	91193421	+	0	NA	Intergenic	Intergenic	-33682	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding
h3k27me3_ko_wt_up-232	chr10	54072538	54075054	+	0	NA	intron (NM_008548, intron 2 of 12)	(TG)n|Simple_repeat|Simple_repeat	2000	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding
h3k27me3_ko_wt_down-491	chr14	94432749	94435179	+	0	NA	Intergenic	Intergenic	-543295	NM_001271799	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k27me3_ko_wt_up-207	chr8	87960680	87963803	+	0	NA	Intergenic	CpG-14330	-2646	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding
h3k4me3_ko_wt_down-127	chr10	91187045	91188361	+	0	NA	Intergenic	Intergenic	-16084	NM_001080131	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
h3k27ac_ko_wt_down-307	chr16	64166444	64167520	+	0	NA	Intergenic	Intergenic	-302825	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k27me3_ko_wt_down-465	chr13	112180264	112183373	+	0	NA	Intergenic	L1MB2|LINE|L1	-106633	NM_001168405	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
h3k27me3_ko_wt_down-431	chr12	91071206	91072778	+	0	NA	intron (NM_181815, intron 21 of 25)	intron (NM_181815, intron 21 of 25)	26144	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA
h3k27me3_ko_wt_up-350	chr15	17643819	17645783	+	0	NA	Intergenic	RMER15|LTR|ERVL	724826	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA
h3k4me3_ko_wt_up-402	chr12	107997421	108005685	+	0	NA	intron (NM_001079883, intron 1 of 3)	intron (NM_001079883, intron 1 of 3)	1861	NM_001286343	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding
h3k27me3_ko_wt_down-386	chr11	39727619	39738987	+	0	NA	Intergenic	Intergenic	-343078	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
h3k27ac_ko_wt_down-50	chr2	101295121	101297582	+	0	NA	Intergenic	Intergenic	-328397	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k27ac_ko_wt_up-170	chr9	98317084	98317511	+	0	NA	intron (NM_144533, intron 1 of 4)	intron (NM_144533, intron 1 of 4)	20714	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding
h3k4me3_ko_wt_down-55	chr5	3892976	3894189	+	0	NA	intron (NM_172135, intron 1 of 1)	intron (NM_172135, intron 1 of 1)	351	NM_172135	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding
h3k27ac_ko_wt_up-146	chr7	126273298	126273970	+	0	NA	intron (NM_145587, intron 1 of 3)	intron (NM_145587, intron 1 of 3)	1015	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding
h3k27ac_ko_wt_up-224	chr13	115574538	115575894	+	0	NA	Intergenic	Intergenic	-473252	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
h3k27me3_ko_wt_down-382	chr11	19528810	19532606	+	0	NA	Intergenic	Intergenic	-393734	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding
h3k27me3_ko_wt_down-80	chr2	114003097	114004795	+	0	NA	Intergenic	Intergenic	-9619	NR_028423	320846	Mm.441458	NR_028423	ENSMUSG00000087694	A530058N18Rik	-	RIKEN cDNA A530058N18 gene	ncRNA
h3k4me3_ko_wt_up-283	chr8	46292210	46293556	+	0	NA	intron (NM_173789, intron 3 of 3)	intron (NM_173789, intron 3 of 3)	1788	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Mgn|megane	helt bHLH transcription factor	protein-coding
h3k27ac_ko_wt_up-133	chr6	107711095	107712161	+	0	NA	Intergenic	Intergenic	181902	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding
h3k4me3_ko_wt_down-178	chr16	14906305	14907385	+	0	NA	intron (NM_025769, intron 1 of 5)	intron (NM_025769, intron 1 of 5)	199	NM_025769	66793	Mm.100270	NM_025769		Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding
h3k27ac_ko_wt_up-88	chr3	132849446	132850186	+	0	NA	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	28780	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA
h3k27me3_ko_wt_down-444	chr13	13874377	13877538	+	0	NA	Intergenic	Intergenic	-78717	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding
h3k27me3_ko_wt_up-418	chr18	66041103	66043461	+	0	NA	Intergenic	Intergenic	-39647	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding
h3k27me3_ko_wt_up-160	chr6	62654759	62657236	+	0	NA	Intergenic	Intergenic	-600860	NM_008167	14804	Mm.439651	NM_008167		Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding
h3k4me3_ko_wt_up-372	chr11	95512812	95514528	+	0	NA	intron (NM_130858, intron 1 of 1)	CpG	895	NM_130858	104079	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding
h3k27me3_ko_wt_down-151	chr4	52830783	52833121	+	0	NA	Intergenic	Intergenic	6553	NM_146858	258857	Mm.484340	NM_146858	ENSMUSG00000089717	Olfr275	MOR262-2	olfactory receptor 275	protein-coding
h3k4me3_ko_wt_up-160	chr4	124575067	124575790	+	0	NA	non-coding (NR_045819, exon 3 of 3)	non-coding (NR_045819, exon 3 of 3)	6249	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
h3k4me3_ko_wt_up-28	chr1	156673344	156674936	+	0	NA	exon (NM_023141, exon 1 of 6)	exon (NM_023141, exon 1 of 6)	199	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding
h3k27me3_ko_wt_down-323	chr8	59476829	59479961	+	0	NA	Intergenic	Intergenic	-347254	NR_126087	75017	Mm.60775	NR_126087		4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA
h3k27ac_ko_wt_up-13	chr1	52952237	52952672	+	0	NA	intron (NM_144953, intron 1 of 1)	intron (NM_144953, intron 1 of 1)	386	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding
h3k4me3_ko_wt_up-182	chr5	53185662	53186481	+	0	NA	exon (NM_172710, exon 4 of 24)	exon (NM_172710, exon 4 of 24)	27381	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding
h3k27ac_ko_wt_up-232	chr14	112894502	112894807	+	0	NA	Intergenic	Intergenic	873224	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
h3k27me3_ko_wt_down-347	chr10	19420985	19423660	+	0	NA	Intergenic	Intergenic	65783	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
h3k4me3_ko_wt_up-204	chr5	140606863	140609992	+	0	NA	intron (NM_008494, intron 1 of 7)	intron (NM_008494, intron 1 of 7)	1086	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding
h3k4me3_ko_wt_up-314	chr9	102544235	102546136	+	0	NA	3' UTR (NM_024291, exon 11 of 11)	3' UTR (NM_024291, exon 11 of 11)	39047	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding
h3k27ac_ko_wt_up-99	chr4	22300529	22302781	+	0	NA	Intergenic	Intergenic	-55888	NM_172988	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding
h3k27ac_ko_wt_up-39	chr2	77927065	77927713	+	0	NA	intron (NM_030560, intron 6 of 20)	intron (NM_030560, intron 6 of 20)	18967	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-359	chr10	104396219	104401121	+	0	NA	Intergenic	Intergenic	111401	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA
h3k27me3_ko_wt_down-554	chr16	84478582	84481375	+	0	NA	Intergenic	Intergenic	108835	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k27me3_ko_wt_down-480	chr14	47450445	47453371	+	0	NA	Intergenic	PB1D10|SINE|Alu	-20653	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
h3k4me3_ko_wt_down-36	chr3	101108744	101110831	+	0	NA	intron (NM_011197, intron 1 of 8)	CpG	379	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27me3_ko_wt_down-268	chr6	140779655	140782225	+	0	NA	Intergenic	RMER5|LTR|ERV1	154055	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding
h3k27me3_ko_wt_down-204	chr4	111878060	111880551	+	0	NA	intron (NM_145551, intron 14 of 14)	intron (NM_145551, intron 14 of 14)	23491	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k27me3_ko_wt_down-4	chr1	18144579	18145529	+	0	NA	Intergenic	Intergenic	-8003	NM_030033	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding
h3k27me3_ko_wt_up-270	chr11	111064577	111065548	+	0	NA	Intergenic	Intergenic	-1102	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27me3_ko_wt_down-97	chr3	33137880	33143574	+	0	NA	intron (NM_001163516, intron 1 of 12)	intron (NM_001163516, intron 1 of 12)	2464	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding
h3k27me3_ko_wt_up-224	chr9	94214403	94215105	+	0	NA	Intergenic	Intergenic	323327	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding
h3k27ac_ko_wt_down-191	chr10	4923959	4925901	+	0	NA	intron (NM_001302533, intron 5 of 7)	(TCTCTG)n|Simple_repeat|Simple_repeat	144133	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
h3k27ac_ko_wt_down-261	chr13	116459473	116459863	+	0	NA	Intergenic	Intergenic	-149980	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding
h3k27me3_ko_wt_down-607	chr18	83591077	83603837	+	0	NA	Intergenic	Intergenic	-271573	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
h3k27me3_ko_wt_down-378	chr11	19260618	19263456	+	0	NA	Intergenic	Intergenic	196762	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k27me3_ko_wt_down-70	chr2	64820337	64824023	+	0	NA	Intergenic	Intergenic	200586	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding
h3k4me3_ko_wt_up-364	chr11	78301084	78302409	+	0	NA	intron (NM_017407, intron 1 of 23)	CpG	155	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding
h3k4me3_ko_wt_up-110	chr3	37722750	37724792	+	0	NA	intron (NM_198657, intron 1 of 2)	intron (NM_198657, intron 1 of 2)	589	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding
h3k27me3_ko_wt_down-331	chr8	75651927	75654869	+	0	NA	intron (NM_001164235, intron 7 of 13)	L1M5|LINE|L1	204704	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding
h3k27me3_het_wt_down-19	chrX	94256968	94261047	+	0	NA	intron (NM_001039061, intron 2 of 2)	intron (NM_001039061, intron 2 of 2)	-15567	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k4me3_ko_wt_up-79	chr2	119325224	119327806	+	0	NA	promoter-TSS (NR_030683)	promoter-TSS (NR_030683)	-318	NR_030683	100043609	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4|OTTMUSG00000015946	predicted gene 14207	ncRNA
h3k27ac_ko_wt_up-150	chr8	15390066	15390526	+	0	NA	Intergenic	Intergenic	332643	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding
h3k4me3_ko_wt_up-123	chr3	116126670	116129428	+	0	NA	intron (NM_011693, intron 2 of 8)	intron (NM_011693, intron 2 of 8)	1639	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding
h3k27ac_ko_wt_up-48	chr2	92058659	92060306	+	0	NA	Intergenic	CpG	-35312	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding
h3k4me3_ko_wt_up-222	chr6	99725595	99726754	+	0	NA	intron (NM_015768, intron 1 of 3)	intron (NM_015768, intron 1 of 3)	218	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding
h3k27me3_ko_wt_down-482	chr14	47468786	47470516	+	0	NA	Intergenic	Intergenic	-2910	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding
h3k27me3_ko_wt_down-486	chr14	72503614	72504568	+	0	NA	Intergenic	RLTR24B_MM|LTR|ERV1	205912	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding
h3k4me3_ko_wt_up-12	chr1	75277643	75278406	+	0	NA	intron (NM_009049, intron 1 of 5)	intron (NM_009049, intron 1 of 5)	356	NM_009049	19711	Mm.4032	NM_009049	ENSMUSG00000033061	Resp18	AI851012	regulated endocrine-specific protein 18	protein-coding
h3k4me3_ko_wt_up-432	chr13	107644743	107646468	+	0	NA	Intergenic	Intergenic	-41792	NR_045900	72257	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA
h3k27me3_ko_wt_down-199	chr4	111683641	111687149	+	0	NA	Intergenic	RMER30|DNA|hAT-Charlie	-34615	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding
h3k27me3_ko_wt_down-139	chr4	6782460	6784726	+	0	NA	intron (NM_145711, intron 3 of 8)	(GA)n|Simple_repeat|Simple_repeat	207130	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
h3k27me3_ko_wt_up-375	chr16	10506938	10507586	+	0	NA	intron (NM_001302618, intron 7 of 18)	intron (NM_001302618, intron 7 of 18)	17481	NM_001243761	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding
h3k27me3_ko_wt_up-208	chr8	88449989	88453965	+	0	NA	Intergenic	Intergenic	-69367	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding
h3k4me3_ko_wt_down-112	chr9	41889918	41892501	+	0	NA	Intergenic	Intergenic	233080	NM_011436	20660	Mm.121920	NM_011436		Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding
h3k27me3_ko_wt_up-138	chr5	116342958	116344727	+	0	NA	Intergenic	(TTCCC)n|Simple_repeat|Simple_repeat	31482	NR_110475	77846	Mm.404871	NR_110475	ENSMUSG00000086715	B230112J18Rik	-	RIKEN cDNA B230112J18 gene	ncRNA
h3k27me3_ko_wt_up-321	chr14	29717896	29721351	+	0	NA	intron (NM_009785, intron 2 of 37)	intron (NM_009785, intron 2 of 37)	2241	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding
h3k27ac_ko_wt_down-43	chr2	55692438	55694200	+	0	NA	Intergenic	UCON25|Unknown|Unknown	257349	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
h3k4me3_ko_wt_down-24	chr2	152950823	152952296	+	0	NA	promoter-TSS (NM_001159376)	promoter-TSS (NM_001159376)	23	NM_001159376	252864	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding
h3k27me3_ko_wt_down-289	chr7	115676187	115678537	+	0	NA	intron (NM_001277328, intron 3 of 13)	intron (NM_001277328, intron 3 of 13)	124247	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding
h3k27ac_het_wt_down-4	chr17	45063592	45064576	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-183199	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
h3k4me3_ko_wt_down-146	chr12	9029512	9031274	+	0	NA	intron (NM_029321, intron 1 of 2)	CpG	396	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding
h3k27me3_ko_wt_down-275	chr7	51604025	51605740	+	0	NA	Intergenic	Intergenic	-16948	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding
h3k4me3_ko_wt_down-167	chr14	20451304	20452458	+	0	NA	intron (NM_001163638, intron 1 of 28)	intron (NM_001163638, intron 1 of 28)	344	NM_001163639	76670	Mm.159759	NM_029698	ENSMUSG00000039543	Cfap70	Ttc18	cilia and flagella associated protein 70	protein-coding
h3k27me3_ko_wt_up-458	chrX	94134254	94135923	+	0	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-11681	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_up-236	chr10	68044285	68045016	+	0	NA	TTS (NM_001081346)	TTS (NM_001081346)	65052	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
h3k27me3_ko_wt_up-87	chr2	169468690	169470355	+	0	NA	Intergenic	Intergenic	-164124	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
h3k27me3_ko_wt_down-391	chr11	48053326	48054155	+	0	NA	intron (NR_105801, intron 3 of 3)	intron (NR_105801, intron 3 of 3)	20843	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
h3k27me3_ko_wt_up-106	chr3	101090276	101091186	+	0	NA	intron (NM_011197, intron 1 of 8)	L1MEg|LINE|L1	19435	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27me3_ko_wt_down-365	chr10	115759874	115761448	+	0	NA	Intergenic	Intergenic	-56623	NM_146010	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding
h3k27ac_ko_wt_down-116	chr5	62705332	62707374	+	0	NA	intron (NM_178407, intron 8 of 32)	intron (NM_178407, intron 8 of 32)	59824	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
h3k27me3_het_wt_up-10	chr2	78022372	78027107	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-26438	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27ac_ko_wt_down-75	chr3	108961249	108961883	+	0	NA	TTS (NM_025723)	TTS (NM_025723)	21009	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding
h3k27ac_ko_wt_down-142	chr6	76696263	76698147	+	0	NA	Intergenic	Intergenic	-545512	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
h3k27ac_ko_wt_down-21	chr1	94136688	94137685	+	0	NA	Intergenic	Intergenic	-84633	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
h3k27me3_ko_wt_up-343	chr15	6319423	6323011	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	21428	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k4me3_ko_wt_down-70	chr6	51612207	51613573	+	0	NA	Intergenic	CpG	68367	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding
h3k27me3_ko_wt_down-395	chr12	34903951	34906536	+	0	NA	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	11852	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding
h3k27ac_ko_wt_down-119	chr5	77776434	77777157	+	0	NA	Intergenic	Intergenic	311307	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
h3k27ac_ko_wt_down-38	chr2	40090973	40091959	+	0	NA	Intergenic	Intergenic	-865128	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding
h3k4me3_ko_wt_down-214	chrX	150439656	150441413	+	0	NA	intron (NM_001164683, intron 1 of 2)	intron (NM_001164683, intron 1 of 2)	371	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding
h3k4me3_ko_wt_up-390	chr12	4873873	4874701	+	0	NA	promoter-TSS (NM_001033488)	promoter-TSS (NM_001033488)	72	NM_001033488	432628	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding
h3k27me3_ko_wt_down-361	chr10	105093300	105098337	+	0	NA	Intergenic	Intergenic	478661	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding
h3k27me3_ko_wt_up-143	chr6	16071697	16073245	+	0	NA	Intergenic	Lx5b|LINE|L1	351810	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding
h3k27me3_ko_wt_up-306	chr13	72466809	72468034	+	0	NA	Intergenic	Intergenic	161143	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA
h3k27me3_het_wt_down-7	chr17	36156918	36167445	+	0	NA	non-coding (NR_033517, exon 4 of 4)	non-coding (NR_033517, exon 4 of 4)	6356	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding
h3k27ac_ko_wt_up-141	chr7	57503121	57503800	+	0	NA	intron (NM_176942, intron 2 of 9)	intron (NM_176942, intron 2 of 9)	6549	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding
h3k27me3_ko_wt_down-516	chr15	26586204	26589048	+	0	NA	intron (NM_176959, intron 2 of 3)	MLT1F2|LTR|ERVL-MaLR	278578	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding
h3k27me3_ko_wt_down-226	chr5	50450357	50456903	+	0	NA	Intergenic	Intergenic	200868	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA
h3k27me3_ko_wt_down-453	chr13	30719950	30723461	+	0	NA	Intergenic	L1MB7|LINE|L1	-27553	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|Spip	interferon regulatory factor 4	protein-coding
h3k27me3_ko_wt_up-95	chr3	34794738	34796837	+	0	NA	Intergenic	Intergenic	23712	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA
h3k27me3_ko_wt_up-121	chr4	137841158	137843063	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-20127	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding
h3k4me3_ko_wt_down-149	chr12	106173868	106175456	+	0	NA	Intergenic	Intergenic	164399	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding
h3k27me3_ko_wt_up-338	chr14	124190864	124196181	+	0	NA	promoter-TSS (NM_010201)	promoter-TSS (NM_010201)	-976	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
h3k27me3_ko_wt_down-222	chr5	48114701	48115557	+	0	NA	intron (NR_111900, intron 4 of 35)	intron (NR_111900, intron 4 of 35)	-108813	NR_029798	723822		NR_029798	ENSMUSG00000065603	Mir218-1	Mirn218-1|mir-218-1	microRNA 218-1	ncRNA
h3k27ac_ko_wt_down-244	chr13	25899475	25900625	+	0	NA	Intergenic	Intergenic	66266	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA
h3k27me3_ko_wt_down-271	chr6	147391044	147393288	+	0	NA	Intergenic	Intergenic	-83705	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding
h3k27me3_ko_wt_down-512	chr15	11741759	11743190	+	0	NA	Intergenic	Intergenic	163200	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding
h3k27me3_ko_wt_up-175	chr6	139589161	139589614	+	0	NA	Intergenic	Intergenic	-87478	NM_001128090	632971	Mm.475610	NM_001128090		Rergl	EG632971	RERG/RAS-like	protein-coding
h3k4me3_ko_wt_up-412	chr13	34651131	34653374	+	0	NA	promoter-TSS (NR_105041)	promoter-TSS (NR_105041)	429	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding
h3k27me3_ko_wt_down-429	chr12	89961184	89962372	+	0	NA	intron (NM_001252074, intron 1 of 6)	L1MA7|LINE|L1	149295	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27ac_ko_wt_up-163	chr9	23062066	23062884	+	0	NA	Intergenic	Intergenic	-160601	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding
h3k27me3_ko_wt_down-614	chr19	16823636	16827449	+	0	NA	Intergenic	Intergenic	-44609	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A (yeast)	protein-coding
h3k4me3_ko_wt_down-143	chr11	111064806	111069991	+	0	NA	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	1234	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27me3_ko_wt_down-169	chr4	66410964	66414262	+	0	NA	Intergenic	Intergenic	-8130	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding
h3k4me3_ko_wt_up-474	chr15	102458793	102459597	+	0	NA	promoter-TSS (NM_025385)	promoter-TSS (NM_025385)	25	NM_001170911	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding
h3k4me3_ko_wt_up-586	chrX	141475220	141475892	+	0	NA	5' UTR (NM_001163155, exon 1 of 51)	5' UTR (NM_001163155, exon 1 of 51)	137	NM_007736	12830	Mm.286892	NM_007736	ENSMUSG00000031274	Col4a5	-	collagen, type IV, alpha 5	protein-coding
h3k27ac_ko_wt_up-16	chr1	72379181	72379860	+	0	NA	intron (NM_009533, intron 16 of 20)	intron (NM_009533, intron 16 of 20)	72099	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding
h3k4me3_het_wt_down-20	chr19	7611933	7612726	+	0	NA	promoter-TSS (NM_025731)	promoter-TSS (NM_025731)	-240	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding
h3k27me3_ko_wt_down-543	chr16	80195987	80197841	+	0	NA	Intergenic	Intergenic	-1003783	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding
h3k27ac_ko_wt_up-280	chr19	23631850	23632489	+	0	NA	intron (NM_026188, intron 1 of 5)	intron (NM_026188, intron 1 of 5)	20643	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding
h3k4me3_ko_wt_up-130	chr3	148976682	148978688	+	0	NA	Intergenic	Intergenic	-23050	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
h3k27ac_ko_wt_down-128	chr6	18687883	18689060	+	0	NA	Intergenic	Intergenic	-160164	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-220	chr12	12708636	12709612	+	0	NA	Intergenic	Intergenic	232712	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
h3k27ac_ko_wt_down-255	chr13	83110779	83111707	+	0	NA	Intergenic	Intergenic	-392791	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
h3k27me3_ko_wt_down-527	chr15	56048422	56051275	+	0	NA	Intergenic	Intergenic	-142899	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding
h3k4me3_ko_wt_down-205	chr19	25635537	25636152	+	0	NA	Intergenic	Intergenic	25307	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding
h3k27me3_ko_wt_up-265	chr11	90950834	90952350	+	0	NA	Intergenic	Intergenic	146901	NR_045956	73922	Mm.233289	NR_045956	ENSMUSG00000085940	4930405D11Rik	-	RIKEN cDNA 4930405D11 gene	ncRNA
h3k27ac_ko_wt_down-113	chr5	57840889	57842479	+	0	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	123603	NM_001310606	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding
h3k27me3_ko_wt_down-335	chr8	119897275	119899028	+	0	NA	Intergenic	Intergenic	-12209	NM_001310630	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding
h3k27ac_ko_wt_up-262	chr17	69736356	69736838	+	0	NA	Intergenic	Intergenic	297271	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
h3k27me3_ko_wt_down-217	chr5	26956998	26959583	+	0	NA	intron (NM_001198886, intron 1 of 25)	intron (NM_001198886, intron 1 of 25)	53512	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding
h3k27me3_ko_wt_down-14	chr1	61378600	61381605	+	0	NA	non-coding (NR_040483, exon 3 of 5)	non-coding (NR_040483, exon 3 of 5)	1670	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27me3_ko_wt_down-298	chr8	26464521	26466702	+	0	NA	Intergenic	Intergenic	307442	NM_199042	73754	Mm.383241	NM_199042		Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding
h3k27me3_ko_wt_down-81	chr2	114867374	114868598	+	0	NA	Intergenic	Intergenic	-213058	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
h3k27me3_ko_wt_up-467	chrX	94262211	94263918	+	0	NA	intron (NM_001039061, intron 2 of 2)	intron (NM_001039061, intron 2 of 2)	-11510	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27ac_ko_wt_down-187	chr9	81966653	81967210	+	0	NA	intron (NM_175213, intron 3 of 4)	intron (NM_175213, intron 3 of 4)	103187	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiosis-specific, MEI4 homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-194	chr5	120605069	120605940	+	0	NA	intron (NM_029408, intron 4 of 4)	intron (NM_029408, intron 4 of 4)	7085	NM_133908	100764	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding
h3k27me3_ko_wt_up-508	chrX	152198594	152201247	+	0	NA	intron (NM_001005475, intron 2 of 13)	L2a|LINE|L2	20911	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding
h3k4me3_ko_wt_up-148	chr4	65123654	65125161	+	0	NA	5' UTR (NM_021362, exon 1 of 22)	5' UTR (NM_021362, exon 1 of 22)	233	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
h3k4me3_ko_wt_up-149	chr4	65125400	65126990	+	0	NA	intron (NM_021362, intron 1 of 21)	(CA)n|Simple_repeat|Simple_repeat	2021	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding
h3k4me3_ko_wt_up-252	chr7	63754931	63755817	+	0	NA	intron (NM_130880, intron 13 of 13)	intron (NM_130880, intron 13 of 13)	-161483	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding
h3k4me3_ko_wt_up-334	chr10	80928710	80931070	+	0	NA	promoter-TSS (NM_008655)	promoter-TSS (NM_008655)	-201	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding
h3k27me3_ko_wt_up-496	chrX	105128170	105129738	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	8576	NM_053201	107528	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding
h3k4me3_het_wt_up-44	chrX	143482908	143483215	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	-35530	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding
h3k27me3_ko_wt_up-91	chr2	170028606	170030282	+	0	NA	Intergenic	Intergenic	41227	NR_033634	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA
h3k27me3_het_wt_up	chr2	77870137	77871294	+	0	NA	Intergenic	Intergenic	-53899	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
h3k27ac_ko_wt_up-212	chr13	83243458	83243689	+	0	NA	Intergenic	Intergenic	-260461	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
h3k27me3_ko_wt_down-188	chr4	91591174	91601562	+	0	NA	Intergenic	Intergenic	-196384	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
h3k4me3_ko_wt_down-65	chr5	124094930	124096400	+	0	NA	5' UTR (NM_019875, exon 1 of 12)	5' UTR (NM_019875, exon 1 of 12)	133	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding
h3k27ac_ko_wt_up-11	chr1	52305790	52307030	+	0	NA	Intergenic	Intergenic	-73178	NM_001113383	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding
h3k27me3_ko_wt_down-220	chr5	47840937	47842416	+	0	NA	Intergenic	Intergenic	-141479	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_up-145	chr7	123500833	123501288	+	0	NA	promoter-TSS (NM_001081329)	promoter-TSS (NM_001081329)	-611	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding
h3k27me3_ko_wt_up-486	chrX	103634360	103635777	+	0	NA	Intergenic	MER102b|DNA|hAT-Charlie	4482	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding
h3k27me3_ko_wt_down-238	chr5	86786581	86789499	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-16450	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding
h3k27me3_ko_wt_down-510	chr15	3570500	3579216	+	0	NA	intron (NM_010284, intron 1 of 10)	intron (NM_010284, intron 1 of 10)	6984	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding
h3k4me3_ko_wt_up-15	chr1	83405564	83408725	+	0	NA	intron (NM_172430, intron 1 of 10)	intron (NM_172430, intron 1 of 10)	1056	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding
h3k27ac_ko_wt_down-60	chr3	7014581	7014781	+	0	NA	Intergenic	Intergenic	-351923	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding
h3k4me3_ko_wt_up-480	chr16	10411352	10412503	+	0	NA	promoter-TSS (NM_011955)	promoter-TSS (NM_011955)	-11	NM_011955	26425	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding
h3k27me3_ko_wt_up-472	chrX	94344172	94345601	+	0	NA	Intergenic	Intergenic	-22224	NM_026673	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding
h3k27me3_ko_wt_up-360	chr15	41012764	41014024	+	0	NA	intron (NM_011766, intron 5 of 7)	intron (NM_011766, intron 5 of 7)	358352	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding
h3k27ac_ko_wt_up-274	chr18	45007772	45008161	+	0	NA	Intergenic	Intergenic	179301	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding
h3k4me3_ko_wt_up-544	chr18	55815896	55816650	+	0	NA	Intergenic	Intergenic	-615859	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding
h3k4me3_ko_wt_up-462	chr15	41788323	41789946	+	0	NA	promoter-TSS (NM_130885)	promoter-TSS (NM_130885)	100	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding
h3k4me3_ko_wt_up-153	chr4	97783952	97786809	+	0	NA	intron (NM_010905, intron 2 of 10)	(TG)n|Simple_repeat|Simple_repeat	7754	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
h3k27ac_ko_wt_up-120	chr5	97110701	97111408	+	0	NA	intron (NM_198422, intron 1 of 6)	MIRc|SINE|MIR	542	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding
h3k27me3_ko_wt_down-155	chr4	59386231	59392183	+	0	NA	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	49426	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
h3k27ac_ko_wt_down-135	chr6	44286473	44287050	+	0	NA	Intergenic	Intergenic	-620483	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
h3k27ac_ko_wt_up-113	chr5	27265929	27266252	+	0	NA	intron (NM_001136060, intron 1 of 25)	intron (NM_001136060, intron 1 of 25)	4155	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding
h3k27ac_ko_wt_down-330	chr19	20917866	20918831	+	0	NA	intron (NM_028953, intron 2 of 20)	intron (NM_028953, intron 2 of 20)	35854	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding
h3k27me3_ko_wt_down-555	chr16	84487214	84489205	+	0	NA	Intergenic	Intergenic	117066	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k27me3_ko_wt_down-205	chr4	111886779	111890055	+	0	NA	intron (NM_145551, intron 10 of 14)	(TCCCC)n|Simple_repeat|Simple_repeat	14379	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k4me3_ko_wt_up-467	chr15	92396609	92397927	+	0	NA	exon (NM_001164593, exon 1 of 10)	exon (NM_001164593, exon 1 of 10)	458	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
h3k27ac_ko_wt_down-233	chr12	70367373	70368149	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	-20147	NM_001110202	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding
h3k27me3_ko_wt_up-422	chr18	83943187	83946067	+	0	NA	Intergenic	Intergenic	141935	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding
h3k27ac_ko_wt_down-64	chr3	25806053	25807702	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	346430	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
h3k4me3_ko_wt_up-195	chr5	122987117	122991474	+	0	NA	promoter-TSS (NM_001003953)	promoter-TSS (NM_001003953)	-59	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA
h3k27me3_ko_wt_up-364	chr15	67177239	67179555	+	0	NA	Intergenic	Intergenic	-1515	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding
h3k4me3_ko_wt_up-278	chr8	24437704	24439346	+	0	NA	3' UTR (NM_026931, exon 1 of 1)	3' UTR (NM_026931, exon 1 of 1)	421	NM_026931	69068	Mm.25775	NM_026931		1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding
h3k4me3_ko_wt_up-471	chr15	100443007	100444018	+	0	NA	Intergenic	Intergenic	20319	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA
h3k4me3_ko_wt_down-61	chr5	90930627	90932712	+	0	NA	intron (NM_026788, intron 1 of 7)	intron (NM_026788, intron 1 of 7)	473	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding
h3k27me3_ko_wt_down-110	chr3	126724203	126732054	+	0	NA	intron (NM_001293665, intron 3 of 19)	MTD|LTR|ERVL-MaLR	131177	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_down-45	chr1	129476428	129480239	+	0	NA	intron (NM_172485, intron 2 of 27)	Lx5b|LINE|L1	205029	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding
h3k4me3_ko_wt_up-279	chr8	35725453	35726072	+	0	NA	Intergenic	Intergenic	100797	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
h3k27ac_ko_wt_up-217	chr13	97750352	97751328	+	0	NA	Intergenic	Intergenic	190840	NR_046157	328314	Mm.138047	NR_046157		Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA
h3k4me3_ko_wt_down-160	chr13	51651093	51652260	+	0	NA	promoter-TSS (NM_029279)	promoter-TSS (NM_029279)	-32	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding
h3k27me3_ko_wt_down-588	chr18	10360315	10362665	+	0	NA	intron (NM_001083628, intron 1 of 32)	intron (NM_001083628, intron 1 of 32)	36311	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding
h3k4me3_ko_wt_up-257	chr7	109173374	109175953	+	0	NA	intron (NM_001302205, intron 1 of 3)	intron (NM_001302205, intron 1 of 3)	544	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding
h3k4me3_ko_wt_down-198	chr18	66288305	66293100	+	0	NA	intron (NM_178793, intron 2 of 10)	intron (NM_178793, intron 2 of 10)	1136	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding
h3k27me3_ko_wt_up-30	chr1	183065888	183068013	+	0	NA	Intergenic	Intergenic	80607	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-445	chr13	13878503	13879376	+	0	NA	Intergenic	Intergenic	-75735	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding
h3k27me3_ko_wt_up-113	chr3	152164691	152167819	+	0	NA	promoter-TSS (NM_016867)	promoter-TSS (NM_016867)	-355	NM_016867	54120	Mm.97	NM_016867		Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding
h3k27ac_ko_wt_up-55	chr2	123634336	123635009	+	0	NA	Intergenic	Intergenic	-455297	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding
h3k4me3_het_wt_up-20	chr4	70378061	70378336	+	0	NA	intron (NM_145990, intron 4 of 36)	GSAT_MM|Satellite|Satellite	32237	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding
h3k27ac_ko_wt_down-171	chr8	65288128	65289258	+	0	NA	Intergenic	Intergenic	-159156	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA
h3k27ac_ko_wt_up-68	chr3	6886260	6887607	+	0	NA	Intergenic	Intergenic	-266490	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding
h3k27ac_ko_wt_up-275	chr18	63894170	63894513	+	0	NA	intron (NM_001014981, intron 21 of 27)	intron (NM_001014981, intron 21 of 27)	185646	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding
h3k4me3_ko_wt_up-545	chr18	57132881	57135380	+	0	NA	intron (NM_001001979, intron 1 of 24)	intron (NM_001001979, intron 1 of 24)	1040	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding
h3k4me3_ko_wt_up-51	chr2	30718532	30719465	+	0	NA	Intergenic	Intergenic	-2212	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA
h3k27me3_ko_wt_down-77	chr2	95133015	95134643	+	0	NA	Intergenic	Intergenic	-695643	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
h3k4me3_het_wt_up-13	chr2	177464691	177465658	+	0	NA	intron (NM_001177568, intron 1 of 3)	RMER17B|LTR|ERVK	432	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
h3k27ac_ko_wt_up-198	chr11	47988019	47989570	+	0	NA	intron (NR_105801, intron 3 of 3)	CpG	85789	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA
h3k27ac_ko_wt_up-144	chr7	118778701	118779321	+	0	NA	intron (NM_027815, intron 12 of 30)	intron (NM_027815, intron 12 of 30)	38740	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding
h3k27me3_ko_wt_down-54	chr1	195306974	195309000	+	0	NA	Intergenic	Intergenic	-131272	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding
h3k4me3_het_wt_up-45	chrY	90807868	90808257	+	0	NA	intron (NM_133362, intron 2 of 2)	intron (NM_133362, intron 2 of 2)	22620	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
h3k27ac_ko_wt_up-226	chr14	16517902	16520168	+	0	NA	intron (NM_001289760, intron 4 of 9)	intron (NM_001289760, intron 4 of 9)	56441	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding
h3k27ac_ko_wt_up-199	chr12	5088817	5089394	+	0	NA	intron (NM_001164493, intron 11 of 13)	intron (NM_001164493, intron 11 of 13)	171752	NM_001099628	320817	Mm.210966	NM_001099628		Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding
h3k4me3_ko_wt_down-134	chr11	67596170	67599722	+	0	NA	intron (NM_001277079, intron 1 of 13)	intron (NM_001277079, intron 1 of 13)	1391	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding
h3k4me3_ko_wt_up-513	chr17	36083301	36084338	+	0	NA	exon (NM_008199, exon 2 of 6)	exon (NM_008199, exon 2 of 6)	430	NM_008199	14963	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding
h3k27ac_ko_wt_down-239	chr13	9065880	9066380	+	0	NA	Intergenic	Intergenic	-27751	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding
h3k4me3_ko_wt_up-335	chr10	87351160	87352281	+	0	NA	Intergenic	Intergenic	141940	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute complex homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-520	chr17	56276045	56277341	+	0	NA	promoter-TSS (NM_174989)	promoter-TSS (NM_174989)	74	NM_174989	106759	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding
h3k27ac_het_wt_up-5	chr2	77911948	77912665	+	0	NA	intron (NM_030560, intron 14 of 20)	Lx2|LINE|L1	34050	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-215	chr11	25168360	25169371	+	0	NA	Intergenic	Intergenic	-157242	NR_045853	71234	Mm.158627	NR_045853	ENSMUSG00000033015	4933427E13Rik	-	RIKEN cDNA 4933427E13 gene	ncRNA
h3k27me3_ko_wt_down-127	chr3	145727234	145727807	+	0	NA	Intergenic	Intergenic	-31172	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k4me3_ko_wt_up-329	chr10	67979109	67980479	+	0	NA	exon (NM_001081346, exon 1 of 13)	exon (NM_001081346, exon 1 of 13)	196	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
h3k4me3_ko_wt_up-331	chr10	73821610	73822411	+	0	NA	5' UTR (NM_001142738, exon 1 of 31)	5' UTR (NM_001142738, exon 1 of 31)	143	NM_001142739	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19	protocadherin 15	protein-coding
h3k27ac_ko_wt_up-267	chr18	20895395	20897104	+	0	NA	promoter-TSS (NM_029491)	promoter-TSS (NM_029491)	-171	NM_177038	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding
h3k27me3_ko_wt_up-94	chr2	181459836	181462125	+	0	NA	Intergenic	Intergenic	-1554	NM_028125	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding
h3k27me3_ko_wt_up-48	chr2	58786756	58787958	+	0	NA	intron (NM_001289660, intron 7 of 7)	intron (NM_001289660, intron 7 of 7)	32173	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
h3k4me3_ko_wt_down-103	chr8	83772614	83773595	+	0	NA	Intergenic	Intergenic	-31793	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding
h3k27ac_ko_wt_down-323	chr18	30267306	30268634	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-4926	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
h3k4me3_het_wt_up-41	chr17	47832894	47833697	+	0	NA	promoter-TSS (NM_010783)	promoter-TSS (NM_010783)	-4	NM_010783	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding
h3k27ac_ko_wt_down-153	chr7	56459530	56460949	+	0	NA	intron (NM_021879, intron 23 of 23)	intron (NM_021879, intron 23 of 23)	220468	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
h3k27me3_ko_wt_up-261	chr11	80840483	80844532	+	0	NA	Intergenic	L1MDa|LINE|L1	15793	NR_110449	75043	Mm.410815	NR_110449	ENSMUSG00000086703	4930507D10Rik	-	RIKEN cDNA 4930507D10 gene	ncRNA
h3k4me3_ko_wt_up-328	chr10	62109695	62111323	+	0	NA	intron (NM_027251, intron 1 of 3)	intron (NM_027251, intron 1 of 3)	504	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding
h3k27ac_ko_wt_down-318	chr18	15621489	15622006	+	0	NA	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	96299	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
h3k27me3_ko_wt_down-274	chr7	51593603	51596044	+	0	NA	non-coding (NR_073508, exon 21 of 21)	non-coding (NR_073508, exon 21 of 21)	-27007	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding
h3k27me3_ko_wt_up-49	chr2	58792930	58797049	+	0	NA	Intergenic	L1MB3|LINE|L1	39805	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding
h3k4me3_het_wt_down-15	chr17	6654756	6656258	+	0	NA	intron (NM_001166630, intron 1 of 4).2	CpG	324	NM_001166630	100040563	Mm.457381	NM_001166630		Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding
h3k27me3_ko_wt_down-467	chr13	115571281	115574205	+	0	NA	Intergenic	Intergenic	-470779	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding
h3k27me3_ko_wt_down-143	chr4	28299490	28300789	+	0	NA	Intergenic	Intergenic	-512992	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding
h3k27me3_ko_wt_up-433	chr19	35858099	35859230	+	0	NA	Intergenic	Intergenic	198696	NM_008315	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding
h3k27me3_ko_wt_down-364	chr10	105576776	105579236	+	0	NA	intron (NR_038032, intron 1 of 2)	intron (NR_038032, intron 1 of 2)	3455	NR_038032	327812	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06|OTTMUSG00000025047	predicted gene 15663	ncRNA
h3k27me3_ko_wt_down-308	chr8	38571025	38572161	+	0	NA	intron (NM_145841, intron 1 of 7)	Lx10|LINE|L1	89915	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k27me3_ko_wt_down-569	chr17	51825229	51832160	+	0	NA	intron (NM_001163632, intron 1 of 10)	intron (NM_001163632, intron 1 of 10)	-2106	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding
h3k4me3_ko_wt_up-541	chr18	50054520	50055475	+	0	NA	intron (NM_134131, intron 1 of 1)	intron (NM_134131, intron 1 of 1)	1715	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2	tumor necrosis factor, alpha-induced protein 8	protein-coding
h3k27ac_ko_wt_up-271	chr18	25629717	25631181	+	0	NA	intron (NM_001146292, intron 2 of 12)	intron (NM_001146292, intron 2 of 12)	123534	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_up-153	chr6	36644636	36646956	+	0	NA	Intergenic	Intergenic	165565	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
h3k27me3_ko_wt_down-90	chr2	178105289	178107288	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-12687	NM_001177789	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding
h3k4me3_ko_wt_up-417	chr13	56752581	56753950	+	0	NA	Intergenic	CpG	49597	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding
h3k27me3_ko_wt_down-68	chr2	57848201	57850125	+	0	NA	Intergenic	Intergenic	-148992	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding
h3k27me3_ko_wt_up-125	chr4	153477108	153481757	+	0	NA	intron (NM_001099299, intron 1 of 5)	intron (NM_001099299, intron 1 of 5)	3398	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding
h3k27me3_ko_wt_up-520	chrX	169772165	169775701	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	5702	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k4me3_het_wt_up-6	chr2	77897402	77898033	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48639	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-563	chr19	32102493	32103240	+	0	NA	intron (NM_018830, intron 1 of 23)	intron (NM_018830, intron 1 of 23)	274	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding
h3k27me3_ko_wt_down-112	chr3	126744397	126748803	+	0	NA	intron (NM_001293665, intron 4 of 19)	intron (NM_001293665, intron 4 of 19)	149649	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_up-171	chr6	101352493	101354017	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	24642	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
h3k4me3_ko_wt_up-475	chr15	103365556	103366922	+	0	NA	intron (NM_001314041, intron 1 of 30)	CpG	552	NM_010577	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding
h3k27me3_ko_wt_down-116	chr3	126795624	126809848	+	0	NA	intron (NM_001293665, intron 14 of 19)	intron (NM_001293665, intron 14 of 19)	140650	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
h3k27me3_ko_wt_up-53	chr2	77948161	77951883	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-3666	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_up-186	chr10	69730209	69731985	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-194435	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
h3k27me3_ko_wt_down-611	chr19	14652961	14654146	+	0	NA	Intergenic	RMER6A|LTR|ERVK	-55370	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4, homolog of Drosophila E(spl)	protein-coding
h3k4me3_ko_wt_up-191	chr5	117318804	117319823	+	0	NA	promoter-TSS (NM_001033311)	promoter-TSS (NM_001033311)	47	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding
h3k4me3_ko_wt_up-56	chr2	34913470	34914702	+	0	NA	promoter-TSS (NM_028716)	promoter-TSS (NM_028716)	-110	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding
h3k4me3_ko_wt_up-236	chr6	138415331	138416576	+	0	NA	intron (NM_207222, intron 3 of 4)	intron (NM_207222, intron 3 of 4)	-7152	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA
h3k27me3_ko_wt_up-5	chr1	34676869	34680015	+	0	NA	Intergenic	Intergenic	-42232	NR_033627	241051	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo
h3k27ac_ko_wt_down-159	chr7	89726635	89727832	+	0	NA	intron (NM_181407, intron 1 of 13)	intron (NM_181407, intron 1 of 13)	94415	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
h3k4me3_ko_wt_down-109	chr8	105470112	105471624	+	0	NA	intron (NM_026481, intron 1 of 3)	intron (NM_026481, intron 1 of 3)	554	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding
h3k27ac_ko_wt_down-329	chr19	12372590	12373426	+	0	NA	intron (NR_030566, intron 3 of 3)	intron (NR_030566, intron 3 of 3)	-21257	NM_146684	258679	Mm.271520	NM_146684	ENSMUSG00000046650	Olfr1440	MOR215-1	olfactory receptor 1440	protein-coding
h3k27ac_ko_wt_down-204	chr10	55112344	55113678	+	0	NA	Intergenic	Intergenic	-993906	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-426	chr13	84750079	84752406	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-438235	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
h3k27me3_ko_wt_down-615	chr19	17491952	17492651	+	0	NA	intron (NM_001190483, intron 24 of 37)	intron (NM_001190483, intron 24 of 37)	98258	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding
h3k4me3_ko_wt_down-20	chr2	97466239	97475133	+	0	NA	intron (NM_001289744, intron 1 of 1)	intron (NM_001289744, intron 1 of 1)	3029	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_down-83	chr7	63210633	63212846	+	0	NA	intron (NM_007390, intron 2 of 9)	intron (NM_007390, intron 2 of 9)	787	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding
h3k27ac_ko_wt_down-71	chr3	70543869	70544637	+	0	NA	Intergenic	Intergenic	263038	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
h3k27me3_ko_wt_down-437	chr12	107286690	107292288	+	0	NA	Intergenic	Intergenic	445999	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA
h3k27ac_ko_wt_down-25	chr1	111697419	111699544	+	0	NA	Intergenic	Intergenic	166437	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding
h3k27me3_ko_wt_up-60	chr2	78019787	78021455	+	0	NA	Intergenic	RMER16|LTR|ERVK	-30556	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k4me3_ko_wt_up-550	chr18	69562932	69565734	+	0	NA	intron (NM_001083967, intron 7 of 19)	intron (NM_001083967, intron 7 of 19)	218612	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27ac_het_wt_up-2	chr2	77896839	77898775	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48549	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-216	chr6	49217353	49218534	+	0	NA	Intergenic	CpG	-2989	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding
h3k27ac_ko_wt_down-326	chr18	49770454	49771701	+	0	NA	Intergenic	Intergenic	-15476	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding
h3k4me3_ko_wt_down-93	chr7	140153193	140155375	+	0	NA	intron (NM_183147, intron 1 of 1)	intron (NM_183147, intron 1 of 1)	375	NM_183147	212518	Mm.246858	NM_183147	ENSMUSG00000045733	Sprn	C630041J07	shadow of prion protein	protein-coding
h3k4me3_ko_wt_down-106	chr8	95715482	95717028	+	0	NA	exon (NM_001035123, exon 1 of 7)	exon (NM_001035123, exon 1 of 7)	342	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding
h3k4me3_ko_wt_up-306	chr9	42896982	42898283	+	0	NA	intron (NM_175481, intron 1 of 20)	CpG	46739	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding
h3k27ac_ko_wt_up-256	chr17	16493617	16494337	+	0	NA	Intergenic	Intergenic	-570126	NM_001163919	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding
h3k27ac_ko_wt_down-156	chr7	83014932	83016470	+	0	NA	Intergenic	Intergenic	-44310	NR_045855	71285	Mm.76818	NR_045855		4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA
h3k27me3_ko_wt_up-82	chr2	163334840	163341345	+	0	NA	intron (NM_021566, intron 5 of 5)	intron (NM_021566, intron 5 of 5)	59881	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding
h3k4me3_ko_wt_down-3	chr1	36307630	36308455	+	0	NA	intron (NM_001290727, intron 1 of 5)	CpG	309	NR_033310	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding
h3k4me3_het_wt_down-5	chr10	91187045	91188361	+	0	NA	Intergenic	Intergenic	-16084	NM_001080131	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
h3k27me3_het_wt_up-14	chr6	23202155	23204376	+	0	NA	Intergenic	Intergenic	44999	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding
h3k27me3_ko_wt_down-32	chr1	95318642	95321311	+	0	NA	intron (NM_026321, intron 1 of 2)	MLTR18B_MM|LTR|ERVK	6348	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding
h3k4me3_ko_wt_down-152	chr13	3892625	3893992	+	0	NA	exon (NM_001047159, exon 1 of 10)	exon (NM_001047159, exon 1 of 10)	273	NM_001047159	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding
h3k27me3_ko_wt_up-371	chr16	5726879	5727481	+	0	NA	Intergenic	Intergenic	-157613	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding
h3k27me3_ko_wt_down-539	chr16	57823729	57831082	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-72668	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
h3k4me3_ko_wt_down-74	chr6	113342077	113344205	+	0	NA	intron (NM_133926, intron 1 of 11)	intron (NM_133926, intron 1 of 11)	781	NM_133926	52163	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding
h3k27ac_het_wt_up-10	chr2	78004211	78004595	+	0	NA	Intergenic	Intergenic	-46774	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-334	chr8	115422212	115424354	+	0	NA	Intergenic	Intergenic	283611	NM_001025577	17132	Mm.275549	NM_001025577		Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog	protein-coding
h3k4me3_ko_wt_down-121	chr10	34417835	34419003	+	0	NA	exon (NM_176968, exon 1 of 12)	exon (NM_176968, exon 1 of 12)	109	NM_176968	319638	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding
h3k27ac_ko_wt_up-52	chr2	110829336	110830399	+	0	NA	intron (NM_001128103, intron 4 of 26)	intron (NM_001128103, intron 4 of 26)	108373	NM_001290786	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding
h3k27ac_ko_wt_down-301	chr16	37714517	37715943	+	0	NA	Intergenic	Intergenic	-60862	NM_026610	68194	Mm.379154	NM_026610		Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding
h3k27ac_ko_wt_down-102	chr5	14661606	14663091	+	0	NA	intron (NM_001110796, intron 3 of 19)	Lx8b|LINE|L1	147430	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
h3k4me3_ko_wt_up-365	chr11	80809892	80811365	+	0	NA	intron (NM_029537, intron 1 of 6)	intron (NM_029537, intron 1 of 6)	213	NM_029537	103743	Mm.27682	NM_029537	ENSMUSG00000035413	Tmem98	6530411B15Rik|AI463522	transmembrane protein 98	protein-coding
h3k27me3_ko_wt_up-325	chr14	68121217	68124733	+	0	NA	promoter-TSS (NR_045897)	promoter-TSS (NR_045897)	-777	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA
h3k4me3_ko_wt_up-437	chr13	119600220	119600516	+	0	NA	intron (NM_001177666, intron 2 of 3)	intron (NM_001177666, intron 2 of 3)	-23451	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding
h3k27me3_ko_wt_down-599	chr18	26936576	26941188	+	0	NA	Intergenic	Intergenic	-1184899	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_up-353	chr15	23474834	23476265	+	0	NA	Intergenic	Intergenic	439086	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
h3k27me3_ko_wt_down-394	chr12	17331170	17333978	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-7844	NM_133699	68775	Mm.178798	NM_133699	ENSMUSG00000020566	Atp6v1c2	1110038G14Rik	ATPase, H+ transporting, lysosomal V1 subunit C2	protein-coding
h3k27me3_ko_wt_up-448	chrX	13272769	13276675	+	0	NA	Intergenic	Intergenic	-6300	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding
h3k4me3_ko_wt_up-227	chr6	116266096	116266680	+	0	NA	promoter-TSS (NM_001290339)	promoter-TSS (NM_001290339)	-144	NM_001290339	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding
h3k27ac_ko_wt_up-74	chr3	25895765	25896450	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	257200	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
h3k4me3_ko_wt_up-409	chr13	15486249	15487352	+	0	NA	intron (NM_008130, intron 2 of 14)	intron (NM_008130, intron 2 of 14)	23077	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding
h3k27ac_ko_wt_down-288	chr15	18974676	18975842	+	0	NA	intron (NM_009865, intron 5 of 11)	intron (NM_009865, intron 5 of 11)	154930	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
h3k27ac_ko_wt_down-180	chr9	35607689	35608330	+	0	NA	intron (NM_020264, intron 2 of 2)	intron (NM_020264, intron 2 of 2)	3876	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding
h3k27me3_ko_wt_down-497	chr14	99939833	99946406	+	0	NA	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	206677	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k4me3_ko_wt_up-311	chr9	83316754	83317953	+	0	NA	Intergenic	Intergenic	-114194	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
h3k4me3_ko_wt_up-408	chr13	3359867	3361244	+	0	NA	Intergenic	CpG	-117748	NR_015522	76937	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA
h3k4me3_ko_wt_up-201	chr5	139423061	139423945	+	0	NA	intron (NM_029771, intron 1 of 2)	intron (NM_029771, intron 1 of 2)	324	NM_029771	76854	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding
h3k27ac_ko_wt_down-53	chr2	113222139	113222871	+	0	NA	intron (NR_035479, intron 2 of 3)	intron (NR_035479, intron 2 of 3)	2318	NR_035479	100316776		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA
h3k27ac_ko_wt_down-13	chr1	50769200	50770707	+	0	NA	Intergenic	Intergenic	-157570	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding
h3k4me3_ko_wt_up-34	chr1	172340656	172343729	+	0	NA	intron (NM_001039484, intron 1 of 1)	intron (NM_001039484, intron 1 of 1)	982	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding
h3k4me3_ko_wt_up-94	chr2	170218709	170220353	+	0	NA	Intergenic	Intergenic	-76856	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding
h3k4me3_het_wt_up-3	chr1	195241661	195241935	+	0	NA	Intergenic	CpG	-65083	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding
h3k4me3_ko_wt_up-205	chr5	140827457	140830499	+	0	NA	intron (NM_010302, intron 1 of 3)	L1MC5|LINE|L1	1453	NM_010302	14673	Mm.370185	NM_010302		Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding
h3k4me3_ko_wt_up-315	chr9	107666191	107667409	+	0	NA	intron (NM_001199218, intron 1 of 15)	intron (NM_001199218, intron 1 of 15)	599	NM_001199217	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding
h3k4me3_ko_wt_up-533	chr18	35938092	35939811	+	0	NA	Intergenic	Intergenic	-25879	NM_001289602	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding
h3k4me3_ko_wt_up-456	chr14	122450235	122451109	+	0	NA	intron (NR_033325, intron 1 of 2)	intron (NR_033325, intron 1 of 2)	443	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA
h3k27me3_ko_wt_up-469	chrX	94272260	94277281	+	0	NA	TTS (NR_106133)	TTS (NR_106133)	196	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27ac_ko_wt_down-236	chr12	97218053	97218705	+	0	NA	Intergenic	Intergenic	1041080	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding
h3k27me3_ko_wt_up-2	chr1	12245770	12246858	+	0	NA	Intergenic	Lx|LINE|L1	-179672	NR_105759	102465961		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA
h3k27me3_ko_wt_up-274	chr12	13976514	13977867	+	0	NA	Intergenic	Intergenic	174848	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding
h3k4me3_ko_wt_up-343	chr10	128704059	128705358	+	0	NA	intron (NM_183417, intron 1 of 7)	CpG	343	NM_016756	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding
h3k4me3_het_wt_up-33	chr14	100477419	100478383	+	0	NA	Intergenic	Intergenic	-328105	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k4me3_ko_wt_up-53	chr2	33370191	33371748	+	0	NA	intron (NM_001290570, intron 1 of 16)	intron (NM_001290570, intron 1 of 16)	525	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding
h3k4me3_ko_wt_up-266	chr7	126779954	126781146	+	0	NA	promoter-TSS (NM_011538)	promoter-TSS (NM_011538)	-933	NM_011538	21389	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding
h3k27me3_ko_wt_down-418	chr12	89216651	89218866	+	0	NA	intron (NM_172544, intron 4 of 19)	L1MEg|LINE|L1	264368	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding
h3k27me3_ko_wt_down-441	chr13	8729999	8731227	+	0	NA	intron (NM_001289530, intron 7 of 9)	intron (NM_001289530, intron 7 of 9)	140431	NM_172445	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
h3k27ac_ko_wt_down-227	chr12	58425130	58427324	+	0	NA	Intergenic	Intergenic	-156969	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
h3k27me3_ko_wt_up-220	chr9	92771643	92778807	+	0	NA	intron (NR_040770, intron 2 of 4)	Lx8b|LINE|L1	56509	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA
h3k27me3_ko_wt_up-283	chr12	86981349	86986043	+	0	NA	intron (NM_001080943, intron 1 of 1)	intron (NM_001080943, intron 1 of 1)	4980	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding
h3k27me3_ko_wt_up-23	chr1	163534723	163537370	+	0	NA	Intergenic	Intergenic	-132377	NM_001313738	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding
h3k27me3_ko_wt_up-10	chr1	67212952	67213488	+	0	NA	intron (NM_001080809, intron 30 of 37)	intron (NM_001080809, intron 30 of 37)	90193	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding
h3k27me3_ko_wt_down-154	chr4	52851663	52860705	+	0	NA	exon (NM_146824, exon 1 of 1)	exon (NM_146824, exon 1 of 1)	327	NM_146824	258821	Mm.297704	NM_146824	ENSMUSG00000049648	Olfr273	MOR262-8	olfactory receptor 273	protein-coding
h3k27me3_ko_wt_up-313	chr14	22113499	22116473	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	95274	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding
h3k27me3_ko_wt_up-293	chr13	7529214	7531261	+	0	NA	Intergenic	RLTR14_RN|LTR|ERV1	-672629	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k4me3_ko_wt_up-361	chr11	74547088	74547650	+	0	NA	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	42789	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding
h3k27ac_ko_wt_up-237	chr15	18894171	18894370	+	0	NA	intron (NM_009865, intron 1 of 11)	intron (NM_009865, intron 1 of 11)	73941	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
h3k4me3_ko_wt_up-187	chr5	110023003	110023941	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	26945	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding
h3k27me3_ko_wt_up-164	chr6	64672790	64673695	+	0	NA	Intergenic	Intergenic	-55904	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-377	chr11	98836455	98839091	+	0	NA	intron (NM_001080925, intron 1 of 14)	intron (NM_001080925, intron 1 of 14)	988	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding
h3k27ac_ko_wt_up-209	chr13	67172993	67173931	+	0	NA	intron (NM_001013769, intron 1 of 3)	intron (NM_001013769, intron 1 of 3)	280	NM_001013769	380855	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding
h3k27me3_ko_wt_down-551	chr16	83702067	83705834	+	0	NA	Intergenic	MLTR18B_MM|LTR|ERVK	-667193	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA
h3k4me3_ko_wt_up-359	chr11	64957134	64957441	+	0	NA	Intergenic	Intergenic	-21748	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC homolog 2 (E. coli)	protein-coding
h3k27me3_ko_wt_down-201	chr4	111852765	111855261	+	0	NA	Intergenic	Intergenic	48783	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding
h3k27ac_ko_wt_up-208	chr13	39823460	39824497	+	0	NA	Intergenic	Intergenic	464033	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding
h3k4me3_ko_wt_up-358	chr11	59964202	59965366	+	0	NA	exon (NM_009026, exon 1 of 2)	exon (NM_009026, exon 1 of 2)	160	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding
h3k27ac_ko_wt_down-170	chr8	61691002	61691564	+	0	NA	intron (NM_001081390, intron 8 of 19)	intron (NM_001081390, intron 8 of 19)	68815	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding
h3k27ac_ko_wt_down-278	chr14	99733459	99735556	+	0	NA	Intergenic	Intergenic	415289	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27me3_ko_wt_up-354	chr15	24157593	24158431	+	0	NA	Intergenic	RMER19B|LTR|ERVK	1121549	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
h3k27me3_ko_wt_down-494	chr14	97425018	97426452	+	0	NA	Intergenic	RLTR31B2|LTR|ERVK	744030	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-407	chr12	112143079	112149697	+	0	NA	exon (NM_001097621, exon 1 of 16)	exon (NM_001097621, exon 1 of 16)	180	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding
h3k4me3_ko_wt_down-51	chr4	123139187	123140476	+	0	NA	intron (NM_019489, intron 1 of 9)	intron (NM_019489, intron 1 of 9)	110	NM_019489	56031	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding
h3k4me3_ko_wt_up-229	chr6	125349357	125350808	+	0	NA	intron (NM_011609, intron 1 of 9)	intron (NM_011609, intron 1 of 9)	359	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding
h3k4me3_ko_wt_up-438	chr14	30624563	30626868	+	0	NA	intron (NM_011103, intron 1 of 17)	CpG	493	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding
h3k4me3_ko_wt_up-231	chr6	128399362	128400943	+	0	NA	exon (NM_001162858, exon 1 of 6)	exon (NM_001162858, exon 1 of 6)	386	NM_021717	60345	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding
h3k4me3_ko_wt_up-196	chr5	123014683	123016208	+	0	NA	exon (NM_175423, exon 1 of 2)	exon (NM_175423, exon 1 of 2)	371	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding
h3k27ac_ko_wt_up-181	chr10	49978990	49979894	+	0	NA	Intergenic	Lx|LINE|L1	-190688	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding
h3k27me3_ko_wt_down-397	chr12	39057854	39060349	+	0	NA	Intergenic	Intergenic	275390	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k27me3_ko_wt_up-447	chrX	13240932	13244750	+	0	NA	intron (NR_045429, intron 1 of 2)	LTR16E2|LTR|ERVL	4892	NR_045429	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA
h3k27ac_ko_wt_down-54	chr2	148644512	148645448	+	0	NA	Intergenic	Intergenic	-27635	NM_019761	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding
h3k4me3_ko_wt_up-439	chr14	31779913	31782043	+	0	NA	intron (NM_001024604, intron 1 of 27)	intron (NM_001024604, intron 1 of 27)	49437	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding
h3k4me3_ko_wt_up-228	chr6	121272150	121272768	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	26553	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding
h3k4me3_ko_wt_up-421	chr13	77438852	77439148	+	0	NA	intron (NM_001145676, intron 19 of 19)	GSAT_MM|Satellite|Satellite	-269690	NM_138312	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
h3k27me3_ko_wt_up-391	chr16	67063063	67064363	+	0	NA	intron (NM_178721, intron 1 of 9)	B1_Mur1|SINE|Alu	406595	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA
h3k27ac_ko_wt_down-39	chr2	43782719	43786685	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	35878	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
h3k27me3_ko_wt_up-211	chr8	114798964	114800385	+	0	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	360022	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding
h3k4me3_ko_wt_down-94	chr7	143599134	143600655	+	0	NA	intron (NM_013742, intron 1 of 22)	intron (NM_013742, intron 1 of 22)	196	NM_013742	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding
h3k27ac_ko_wt_up-225	chr14	12718717	12719465	+	0	NA	intron (NM_012061, intron 1 of 28)	intron (NM_012061, intron 1 of 28)	103988	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding
h3k4me3_ko_wt_up-336	chr10	93083195	93083960	+	0	NA	Intergenic	Intergenic	-77299	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding
h3k27ac_ko_wt_down-40	chr2	43862525	43863138	+	0	NA	intron (NM_001301832, intron 6 of 14)	intron (NM_001301832, intron 6 of 14)	114007	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
h3k27me3_ko_wt_up-381	chr16	30059469	30063246	+	0	NA	Intergenic	Intergenic	-4000	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-525	chr15	55120700	55123739	+	0	NA	intron (NM_145470, intron 1 of 8)	B1_Mur2|SINE|Alu	-8637	NR_045093	100503794	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	ENSMUSG00000053749	predicted gene 9920	ncRNA
h3k4me3_ko_wt_down-84	chr7	79385359	79386988	+	0	NA	intron (NM_020599, intron 1 of 8)	B1_Mus2|SINE|Alu	854	NM_001173483	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding
h3k27me3_ko_wt_down-337	chr9	12425438	12426510	+	0	NA	Intergenic	Lx6|LINE|L1	679881	NR_040755	78219	Mm.414868	NR_040755		4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA
h3k27me3_ko_wt_down-215	chr5	26179005	26181694	+	0	NA	Intergenic	Intergenic	-58924	NM_001134299	434689	Mm.484129	NM_001134299	ENSMUSG00000067698	Gm10220	ENSMUSG00000067698	predicted gene 10220	protein-coding
h3k4me3_ko_wt_down-45	chr4	108117384	108118939	+	0	NA	intron (NM_011327, intron 1 of 15)	B2_Mm1a|SINE|B2	386	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding
h3k27me3_ko_wt_down-16	chr1	61414780	61416757	+	0	NA	Intergenic	Intergenic	37336	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27ac_ko_wt_up-276	chr18	65606170	65606934	+	0	NA	intron (NM_207255, intron 2 of 5)	intron (NM_207255, intron 2 of 5)	13063	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA
h3k4me3_ko_wt_up-546	chr18	61909460	61911810	+	0	NA	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	1189	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding
h3k4me3_ko_wt_down-73	chr6	99023448	99029125	+	0	NA	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	2012	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding
h3k27me3_ko_wt_down-434	chr12	106444606	106445547	+	0	NA	intron (NR_036593, intron 2 of 3)	intron (NR_036593, intron 2 of 3)	2590	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
h3k27me3_ko_wt_up-340	chr15	6297990	6299666	+	0	NA	promoter-TSS (NM_001008702)	promoter-TSS (NM_001008702)	-961	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k4me3_ko_wt_down-161	chr13	54955650	54956849	+	0	NA	intron (NM_001311128, intron 1 of 14)	CpG	6817	NM_153131	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 homolog A (C. elegans)	protein-coding
h3k27ac_ko_wt_down-81	chr3	151003147	151004224	+	0	NA	Intergenic	Intergenic	-434197	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
h3k4me3_ko_wt_up-570	chr19	56874192	56875045	+	0	NA	intron (NM_172840, intron 1 of 13)	CpG	202	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding
h3k27ac_ko_wt_up-240	chr15	55162094	55163823	+	0	NA	intron (NM_145470, intron 3 of 8)	intron (NM_145470, intron 3 of 8)	29522	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
h3k27me3_ko_wt_up-339	chr15	6297204	6297761	+	0	NA	Intergenic	Intergenic	-2307	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding
h3k27ac_ko_wt_down-91	chr4	31369538	31370955	+	0	NA	Intergenic	Intergenic	-593861	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27me3_het_wt_up-13	chr3	15943055	15945312	+	0	NA	Intergenic	L1VL2|LINE|L1	62149	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding
h3k27me3_ko_wt_down-100	chr3	48430053	48433602	+	0	NA	Intergenic	Lx5c|LINE|L1	177273	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
h3k27me3_ko_wt_down-42	chr1	121033889	121035510	+	0	NA	Intergenic	Intergenic	-52706	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
h3k4me3_ko_wt_up-378	chr11	101140252	101140804	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-15356	NM_134028	103768	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding
h3k27me3_ko_wt_down-106	chr3	118666537	118668713	+	0	NA	intron (NM_170778, intron 2 of 22)	intron (NM_170778, intron 2 of 22)	105447	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding
h3k27me3_ko_wt_up-163	chr6	64666352	64670094	+	0	NA	Intergenic	Intergenic	-60923	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-379	chr11	101337986	101338736	+	0	NA	3' UTR (NM_009675, exon 4 of 4)	3' UTR (NM_009675, exon 4 of 4)	7755	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding
h3k27me3_ko_wt_down-563	chr17	36041534	36043307	+	0	NA	promoter-TSS (NM_001034909)	promoter-TSS (NM_001034909)	272	NM_010399	15051	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding
h3k27ac_ko_wt_up-207	chr13	26519041	26520081	+	0	NA	Intergenic	Intergenic	-207155	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA
h3k27me3_ko_wt_down-102	chr3	79745793	79748148	+	0	NA	Intergenic	Intergenic	-9176	NM_212452	381489	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding
h3k27me3_ko_wt_up-401	chr17	41822538	41823684	+	0	NA	Intergenic	Intergenic	-492836	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding
h3k4me3_ko_wt_up-357	chr11	53478643	53480477	+	0	NA	exon (NM_183173, exon 1 of 1)	exon (NM_183173, exon 1 of 1)	635	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding
h3k4me3_ko_wt_up-69	chr2	77897402	77898033	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48639	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_up-238	chr15	38662062	38662719	+	0	NA	intron (NM_025494, intron 1 of 12)	intron (NM_025494, intron 1 of 12)	486	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding
h3k27me3_ko_wt_down-149	chr4	49810081	49812687	+	0	NA	intron (NM_001033351, intron 1 of 8)	MLT1A1|LTR|ERVL-MaLR	34385	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding
h3k4me3_ko_wt_up-188	chr5	113226017	113226733	+	0	NA	promoter-TSS (NM_001033428)	promoter-TSS (NM_001033428)	-534	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding
h3k27me3_ko_wt_down-601	chr18	26949678	26950944	+	0	NA	Intergenic	Intergenic	-1196328	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_up-251	chr11	19427179	19429474	+	0	NA	Intergenic	Intergenic	363051	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA
h3k4me3_ko_wt_up-189	chr5	114826081	114826751	+	0	NA	Intergenic	Intergenic	-2948	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding
h3k27ac_ko_wt_up-239	chr15	55121133	55121351	+	0	NA	intron (NM_145470, intron 1 of 8)	intron (NM_145470, intron 1 of 8)	-7660	NR_045093	100503794	Mm.360519	NR_045093	ENSMUSG00000053749	Gm9920	ENSMUSG00000053749	predicted gene 9920	ncRNA
h3k27ac_ko_wt_up-221	chr13	109822064	109824376	+	0	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-80589	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
h3k4me3_ko_wt_up-425	chr13	84054481	84067265	+	0	NA	intron (NR_131220, intron 1 of 1)	intron (NR_131220, intron 1 of 1)	3901	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
h3k4me3_het_wt_down-12	chr17	6476036	6477551	+	0	NA	Intergenic	CpG	-25799	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo
h3k27ac_ko_wt_down-246	chr13	34312684	34313550	+	0	NA	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	32065	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
h3k27me3_ko_wt_up-273	chr11	121702436	121705433	+	0	NA	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	1507	NM_144797	210029	Mm.153566	NM_144797		Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding
h3k27me3_ko_wt_down-157	chr4	59398535	59401723	+	0	NA	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	38504	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding
h3k27ac_ko_wt_down-212	chr11	10546919	10547697	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-566708	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
h3k27ac_ko_wt_up-185	chr10	58917511	58918917	+	0	NA	intron (NM_172788, intron 1 of 9)	intron (NM_172788, intron 1 of 9)	104855	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding
h3k4me3_ko_wt_up-503	chr17	17402366	17405471	+	0	NA	intron (NM_025681, intron 1 of 5)	intron (NM_025681, intron 1 of 5)	1232	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb expression 1 homolog (chicken)	protein-coding
h3k4me3_ko_wt_up-235	chr6	137168425	137170002	+	0	NA	intron (NM_181988, intron 1 of 4)	intron (NM_181988, intron 1 of 4)	505	NM_001164212	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding
h3k27ac_ko_wt_down-14	chr1	51191348	51193063	+	0	NA	Intergenic	Intergenic	-96921	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding
h3k27me3_ko_wt_down-91	chr3	6879729	6886266	+	0	NA	Intergenic	Intergenic	-262554	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding
h3k4me3_ko_wt_up-440	chr14	34363114	34364398	+	0	NA	Intergenic	Intergenic	-8363	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding
h3k27me3_ko_wt_up-509	chrX	152206466	152208328	+	0	NA	intron (NM_001005475, intron 4 of 13)	MLT1F|LTR|ERVL-MaLR	-25830	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding
h3k4me3_ko_wt_down-11	chr1	186116450	186117538	+	0	NA	intron (NM_146106, intron 1 of 4)	intron (NM_146106, intron 1 of 4)	316	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding
h3k4me3_ko_wt_up-584	chrX	134162358	134163348	+	0	NA	promoter-TSS (NM_183319)	promoter-TSS (NM_183319)	-925	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	Kell blood group complex subunit-related, X-linked	protein-coding
h3k4me3_ko_wt_up-476	chr16	3632161	3633219	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	40292	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding
h3k27me3_ko_wt_up-314	chr14	22306890	22307642	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	235532	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA
h3k27ac_ko_wt_down-197	chr10	17403942	17404749	+	0	NA	Intergenic	Intergenic	-308563	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA
h3k27me3_ko_wt_up-294	chr13	8587246	8589125	+	0	NA	intron (NM_001289530, intron 3 of 9)	intron (NM_001289530, intron 3 of 9)	282859	NM_172445	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding
h3k27ac_ko_wt_down-267	chr14	57560349	57560692	+	0	NA	intron (NM_026526, intron 2 of 4)	intron (NM_026526, intron 2 of 4)	11049	NM_026526	68043	Mm.45225	NM_026526	ENSMUSG00000021951	N6amt2	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96	N-6 adenine-specific DNA methyltransferase 2 (putative)	protein-coding
h3k27me3_ko_wt_up-245	chr10	87487645	87492285	+	0	NA	Intergenic	Intergenic	3695	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute complex homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-341	chr9	85625057	85625780	+	0	NA	Intergenic	MER74A|LTR|ERVL	123916	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding
h3k27me3_ko_wt_down-318	chr8	50709016	50712048	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	342420	NR_046067	100039954	Mm.400419	NR_046067		Gm2516	-	predicted gene 2516	ncRNA
h3k4me3_ko_wt_up-50	chr2	27886000	27887499	+	0	NA	5' UTR (NM_015734, exon 1 of 66)	5' UTR (NM_015734, exon 1 of 66)	324	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding
h3k27me3_ko_wt_up-284	chr12	95516166	95517263	+	0	NA	Intergenic	Intergenic	-175512	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding
h3k27ac_ko_wt_up-197	chr11	22584562	22585417	+	0	NA	Intergenic	Intergenic	72706	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding
h3k27ac_het_wt_up-7	chr2	77927065	77927713	+	0	NA	intron (NM_030560, intron 6 of 20)	intron (NM_030560, intron 6 of 20)	18967	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-243	chr7	29070822	29072549	+	0	NA	intron (NM_009109, intron 48 of 105)	CpG	12009	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA
h3k4me3_ko_wt_up-366	chr11	82907373	82908489	+	0	NA	intron (NM_145431, intron 2 of 12)	MIRb|SINE|MIR	464	NM_145431	217011	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-533	chr16	56597113	56601252	+	0	NA	intron (NM_001014424, intron 14 of 36)	intron (NM_001014424, intron 14 of 36)	118268	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding
h3k27ac_ko_wt_up-84	chr3	112521404	112521929	+	0	NA	Intergenic	Intergenic	635061	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding
h3k27me3_ko_wt_down-345	chr10	19017954	19019722	+	0	NA	Intergenic	Intergenic	-3428	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding
h3k27ac_ko_wt_down-114	chr5	62498947	62500385	+	0	NA	Intergenic	Intergenic	266511	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
h3k27me3_ko_wt_up-114	chr4	6889178	6890592	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	100838	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding
h3k4me3_ko_wt_down-144	chr11	117986230	117987877	+	0	NA	intron (NM_133757, intron 1 of 9)	CpG	196	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding
h3k27ac_ko_wt_up-255	chr16	85019370	85019780	+	0	NA	intron (NM_007471, intron 9 of 15)	intron (NM_007471, intron 9 of 15)	47364	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA
h3k27ac_ko_wt_down-249	chr13	75739601	75740244	+	0	NA	intron (NM_138953, intron 2 of 11)	intron (NM_138953, intron 2 of 11)	32438	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding
h3k27me3_ko_wt_down-87	chr2	127191694	127193845	+	0	NA	intron (NM_198630, intron 1 of 1)	Lx4A|LINE|L1	15511	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding
h3k27ac_ko_wt_up-57	chr2	129592503	129594185	+	0	NA	5' UTR (NM_007547, exon 1 of 8)	5' UTR (NM_007547, exon 1 of 8)	175	NM_001291021	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding
h3k27me3_ko_wt_up-511	chrX	152296070	152298291	+	0	NA	non-coding (NR_040270, exon 3 of 3)	non-coding (NR_040270, exon 3 of 3)	30313	NR_040270	72997	Mm.254833	NR_040269		Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA
h3k4me3_ko_wt_up-24	chr1	136948441	136949351	+	0	NA	intron (NM_001159769, intron 2 of 8)	CpG-577	4734	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding
h3k4me3_ko_wt_up-215	chr6	47244270	47246478	+	0	NA	intron (NM_025771, intron 1 of 3)	intron (NM_025771, intron 1 of 3)	978	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k27ac_ko_wt_down-181	chr9	39557012	39558738	+	0	NA	Intergenic	Intergenic	-7006	NM_146330	258327	Mm.377436	NM_146330	ENSMUSG00000050853	Olfr958	MOR224-9	olfactory receptor 958	protein-coding
h3k4me3_ko_wt_up-305	chr9	37625278	37626185	+	0	NA	intron (NM_011734, intron 3 of 9)	intron (NM_011734, intron 3 of 9)	11884	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding
h3k4me3_ko_wt_up-142	chr4	45184199	45185678	+	0	NA	promoter-TSS (NM_001081172)	promoter-TSS (NM_001081172)	32	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding
h3k4me3_ko_wt_up-277	chr8	23410719	23415331	+	0	NA	intron (NM_013834, intron 1 of 2)	intron (NM_013834, intron 1 of 2)	1523	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding
h3k27ac_ko_wt_up-219	chr13	105291117	105292697	+	0	NA	intron (NM_027934, intron 1 of 7)	MMVL30-int|LTR|ERV1	1107	NM_027934	71816	Mm.317015	NM_027934		Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding
h3k27ac_ko_wt_down-63	chr3	18640681	18641356	+	0	NA	Intergenic	Intergenic	-160541	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
h3k4me3_ko_wt_up-259	chr7	112954014	112956637	+	0	NA	exon (NM_175279, exon 1 of 1)	exon (NM_175279, exon 1 of 1)	1363	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding
h3k27me3_het_wt_down	chr1	107287480	107289204	+	0	NA	Intergenic	Intergenic	-9971	NM_201363	381286	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding
h3k27me3_ko_wt_up-426	chr19	14481075	14484504	+	0	NA	intron (NM_001302947, intron 8 of 19)	intron (NM_001302947, intron 8 of 19)	-44283	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA
h3k27me3_ko_wt_up-419	chr18	66289576	66293877	+	0	NA	exon (NM_178793, exon 1 of 11)	exon (NM_178793, exon 1 of 11)	112	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding
h3k27ac_ko_wt_up-218	chr13	102698520	102699119	+	0	NA	intron (NM_008533, intron 1 of 2)	intron (NM_008533, intron 1 of 2)	5261	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding
h3k27me3_ko_wt_down-570	chr17	53722417	53728000	+	0	NA	intron (NR_073205, intron 2 of 7)	intron (NR_073205, intron 2 of 7)	8699	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA
h3k27ac_ko_wt_down-243	chr13	19668564	19668769	+	0	NA	intron (NM_001167909, intron 11 of 14)	intron (NM_001167909, intron 11 of 14)	29094	NM_181591	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding
h3k27me3_ko_wt_down-605	chr18	83393051	83395816	+	0	NA	Intergenic	Intergenic	-68549	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
h3k4me3_ko_wt_up-258	chr7	109616002	109616983	+	0	NA	promoter-TSS (NR_037617)	promoter-TSS (NR_037617)	76	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding
h3k4me3_ko_wt_up-451	chr14	73237682	73239765	+	0	NA	exon (NM_175116, exon 1 of 1)	exon (NM_175116, exon 1 of 1)	832	NM_175116	67168	Mm.390681	NM_175116		Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding
h3k4me3_ko_wt_down-155	chr13	21812103	21814437	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	1486	NM_175657	319161	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding
h3k27ac_ko_wt_down-300	chr16	37562956	37563418	+	0	NA	intron (NM_001042499, intron 4 of 7)	intron (NM_001042499, intron 4 of 7)	-16966	NR_027778	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding
h3k4me3_ko_wt_down-120	chr10	18549155	18550430	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-3716	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding
h3k4me3_ko_wt_up-468	chr15	93591507	93592368	+	0	NA	intron (NM_001033217, intron 1 of 7)	intron (NM_001033217, intron 1 of 7)	3954	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-261	chr7	120200976	120201841	+	0	NA	intron (NM_016669, intron 1 of 7)	intron (NM_016669, intron 1 of 7)	580	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding
h3k4me3_ko_wt_down-213	chrX	140276948	140279511	+	0	NA	Intergenic	CpG	-32719	NR_037208	100499512		NR_037208	ENSMUSG00000093102	Mir3475	mir-3475|mmu-mir-3475	microRNA 3475	ncRNA
h3k27ac_ko_wt_down-105	chr5	20153435	20154016	+	0	NA	intron (NM_001170745, intron 2 of 20)	intron (NM_001170745, intron 2 of 20)	246207	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
h3k27me3_ko_wt_up-363	chr15	66969496	66971959	+	0	NA	Intergenic	Intergenic	-1086	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding
h3k27me3_ko_wt_down-35	chr1	102338988	102344541	+	0	NA	Intergenic	L1_Mus3|LINE|L1	1185996	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27me3_ko_wt_down-593	chr18	13852354	13854764	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	119174	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k4me3_ko_wt_up-469	chr15	98001624	98002616	+	0	NA	intron (NM_031163, intron 1 of 53)	CpG	2604	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|M100856|Rgsc856	collagen, type II, alpha 1	protein-coding
h3k27me3_ko_wt_up-209	chr8	90252460	90254406	+	0	NA	intron (NM_172913, intron 5 of 6)	intron (NM_172913, intron 5 of 6)	94819	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding
h3k27me3_ko_wt_up-7	chr1	57610993	57614119	+	0	NA	Intergenic	Intergenic	-162305	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding
h3k27me3_ko_wt_down-19	chr1	61424672	61426301	+	0	NA	Intergenic	Intergenic	47054	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27me3_ko_wt_up-139	chr5	120695460	120696372	+	0	NA	intron (NM_008052, intron 2 of 9)	intron (NM_008052, intron 2 of 9)	15753	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1 homolog (Drosophila)	protein-coding
h3k27me3_ko_wt_up-140	chr5	135850054	135852146	+	0	NA	intron (NM_021403, intron 3 of 14)	intron (NM_021403, intron 3 of 14)	32994	NM_021403	58212	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding
h3k4me3_ko_wt_up-265	chr7	126776384	126777851	+	0	NA	5' UTR (NM_026875, exon 1 of 5)	5' UTR (NM_026875, exon 1 of 5)	142	NM_026875	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-459	chrX	94141341	94144109	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-19318	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27me3_ko_wt_up-73	chr2	105478685	105480674	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-80360	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
h3k27ac_ko_wt_up-44	chr2	78005226	78006034	+	0	NA	Intergenic	Intergenic	-45547	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA
h3k27me3_ko_wt_down-576	chr17	69471099	69474189	+	0	NA	intron (NM_001145192, intron 1 of 1)	intron (NM_001145192, intron 1 of 1)	33318	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
h3k27me3_ko_wt_up-181	chr6	148740220	148741659	+	0	NA	Intergenic	Intergenic	-62939	NR_131024	75831	Mm.159595	NR_131024	ENSMUSG00000084909	4930528G23Rik	-	RIKEN cDNA 4930528G23 gene	ncRNA
h3k4me3_ko_wt_up-455	chr14	105542540	105543401	+	0	NA	Intergenic	Intergenic	44182	NR_045921	74864	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA
h3k27me3_ko_wt_down-248	chr5	138422796	138424463	+	0	NA	Intergenic	Intergenic	-17847	NM_028130	72154	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|mszf12|mszf23-1	zinc finger protein 157	protein-coding
h3k27me3_ko_wt_down-211	chr5	5484157	5487230	+	0	NA	Intergenic	Intergenic	-6550	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding
h3k4me3_ko_wt_up-206	chr5	143369908	143370807	+	0	NA	intron (NM_133355, intron 1 of 20)	intron (NM_133355, intron 1 of 20)	6449	NM_133355	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding
h3k4me3_ko_wt_up-316	chr9	114390081	114391068	+	0	NA	exon (NM_019922, exon 1 of 7)	exon (NM_019922, exon 1 of 7)	138	NM_019922	56693	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding
h3k27me3_ko_wt_up-191	chr7	115218395	115222022	+	0	NA	Intergenic	Intergenic	268934	NR_040319	101786	Mm.395157	NR_040317		A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA
h3k27me3_ko_wt_down-572	chr17	59587746	59590703	+	0	NA	Intergenic	Intergenic	-575902	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
h3k27me3_ko_wt_down-521	chr15	51132586	51137102	+	0	NA	Intergenic	Intergenic	-244803	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding
h3k4me3_ko_wt_up-419	chr13	69481500	69482676	+	0	NA	Intergenic	Intergenic	51776	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding
h3k27me3_ko_wt_down-367	chr10	115781308	115782818	+	0	NA	Intergenic	PB1D7|SINE|Alu	-35221	NM_146010	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding
h3k27me3_ko_wt_up-434	chr19	35860345	35861540	+	0	NA	Intergenic	Intergenic	196418	NM_008315	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding
h3k27ac_ko_wt_up-251	chr16	45098340	45099006	+	0	NA	intron (NM_026439, intron 2 of 7)	intron (NM_026439, intron 2 of 7)	4620	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding
h3k4me3_ko_wt_up-301	chr9	24541952	24542240	+	0	NA	Intergenic	SYNREP_MM|Satellite|Satellite	-38956	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding
h3k4me3_ko_wt_up-418	chr13	58148402	58149043	+	0	NA	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1773	NR_126543	67339	Mm.121929	NR_126543		1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA
h3k4me3_ko_wt_up-211	chr6	18169643	18171170	+	0	NA	promoter-TSS (NM_021050)	promoter-TSS (NM_021050)	-281	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding
h3k27me3_ko_wt_down-28	chr1	78362730	78364706	+	0	NA	intron (NM_001004173, intron 2 of 4)	intron (NM_001004173, intron 2 of 4)	53372	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding
h3k27me3_ko_wt_up-154	chr6	36670172	36672420	+	0	NA	Intergenic	Intergenic	140065	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
h3k27ac_ko_wt_up-268	chr18	25525004	25526087	+	0	NA	intron (NM_001146293, intron 3 of 12)	intron (NM_001146293, intron 3 of 12)	228438	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_up-47	chr2	50813356	50814103	+	0	NA	Intergenic	Intergenic	-95955	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo
h3k27me3_ko_wt_down-124	chr3	144195804	144198283	+	0	NA	intron (NM_010723, intron 2 of 4)	intron (NM_010723, intron 2 of 4)	5289	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding
h3k4me3_ko_wt_up-327	chr10	59539068	59539751	+	0	NA	intron (NM_001033259, intron 1 of 7)	intron (NM_001033259, intron 1 of 7)	77283	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding
h3k27me3_ko_wt_down-13	chr1	61296139	61310611	+	0	NA	Intergenic	Lx8|LINE|L1	-75057	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27me3_ko_wt_down-464	chr13	112178937	112179788	+	0	NA	Intergenic	L1VL2|LINE|L1	-109089	NM_001168405	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding
h3k27me3_ko_wt_down-408	chr12	47587075	47591265	+	0	NA	Intergenic	Intergenic	712292	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
h3k27ac_ko_wt_up-269	chr18	25548334	25549029	+	0	NA	intron (NM_001146292, intron 2 of 12)	intron (NM_001146292, intron 2 of 12)	205302	NM_001146293	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding
h3k27me3_ko_wt_down-277	chr7	51823241	51826427	+	0	NA	Intergenic	Intergenic	37433	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
h3k27me3_ko_wt_up-267	chr11	91779903	91780960	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-202876	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding
h3k27me3_ko_wt_down-83	chr2	114875993	114879472	+	0	NA	Intergenic	Intergenic	-222804	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding
h3k27me3_ko_wt_down-590	chr18	13657634	13661889	+	0	NA	Intergenic	Intergenic	312972	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k4me3_ko_wt_up-128	chr3	145292372	145293283	+	0	NA	5' UTR (NM_027770, exon 1 of 60)	5' UTR (NM_027770, exon 1 of 60)	355	NM_027770	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding
h3k27me3_ko_wt_up-162	chr6	64663478	64665607	+	0	NA	intron (NM_008167, intron 15 of 15)	intron (NM_008167, intron 15 of 15)	-64604	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-275	chr14	86748550	86751571	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	391054	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
h3k27ac_ko_wt_up-281	chr19	28086959	28089134	+	0	NA	Intergenic	Intergenic	-76880	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
h3k4me3_ko_wt_up-296	chr8	120228405	120231933	+	0	NA	Intergenic	CpG	-1939	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA
h3k4me3_ko_wt_up-129	chr3	146681757	146682876	+	0	NA	Intergenic	Intergenic	-30999	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding
h3k4me3_ko_wt_up-131	chr3	149088446	149089002	+	0	NA	Intergenic	Intergenic	-134089	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
h3k27me3_ko_wt_down-573	chr17	60266087	60266896	+	0	NA	Intergenic	Intergenic	-1253169	NM_026497	67993	Mm.36507	NM_026497		Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding
h3k27ac_het_wt_up	chr2	77894943	77895748	+	0	NA	TTS (NM_001290740)	TTS (NM_001290740)	51011	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_down-401	chr12	42840192	42844045	+	0	NA	Intergenic	Intergenic	-1356061	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
h3k27me3_ko_wt_up-177	chr6	148441309	148443998	+	0	NA	intron (NM_198967, intron 1 of 19)	intron (NM_198967, intron 1 of 19)	1699	NM_198967	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding
h3k27ac_ko_wt_down-266	chr14	39043196	39045149	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	145870	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
h3k27ac_ko_wt_down-4	chr1	22614877	22616293	+	0	NA	intron (NM_001012625, intron 3 of 14)	intron (NM_001012625, intron 3 of 14)	-182742	NM_053270	116837	Mm.60061	NM_053270		Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding
h3k4me3_ko_wt_up-524	chr17	71869118	71869826	+	0	NA	exon (NM_007439, exon 29 of 29)	exon (NM_007439, exon 29 of 29)	87525	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding
h3k27me3_ko_wt_up-272	chr11	111279419	111282254	+	0	NA	Intergenic	Intergenic	214672	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27ac_ko_wt_down-29	chr1	151591824	151592580	+	0	NA	intron (NM_022018, intron 1 of 13)	intron (NM_022018, intron 1 of 13)	20829	NM_022018	63913	Mm.157700	NM_022018		Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding
h3k27me3_ko_wt_up-198	chr8	36469524	36470306	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-19276	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
h3k27ac_ko_wt_up-140	chr7	51772307	51773167	+	0	NA	Intergenic	L3|LINE|CR1	89530	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
h3k27ac_ko_wt_down-16	chr1	51640336	51640767	+	0	NA	Intergenic	Intergenic	-162152	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
h3k27ac_ko_wt_up-176	chr10	29818738	29819156	+	0	NA	Intergenic	Intergenic	-283080	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding
h3k4me3_het_wt_down-9	chr14	15436885	15439396	+	0	NA	intron (NM_146052, intron 1 of 1)	intron (NM_146052, intron 1 of 1)	847	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding
h3k27me3_ko_wt_up-188	chr7	101451623	101453964	+	0	NA	intron (NM_001008548, intron 2 of 30)	intron (NM_001008548, intron 2 of 30)	1541	NM_001143849	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding
h3k27ac_ko_wt_down-196	chr10	15549569	15550667	+	0	NA	Intergenic	Intergenic	-241659	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
h3k27me3_ko_wt_up-316	chr14	22727057	22728853	+	0	NA	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-185157	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA
h3k4me3_het_wt_up-24	chr7	38200510	38201313	+	0	NA	Intergenic	Intergenic	17124	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding
h3k27me3_ko_wt_up-296	chr13	41781814	41782714	+	0	NA	intron (NM_001145875, intron 4 of 6)	intron (NM_001145875, intron 4 of 6)	65224	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding
h3k4me3_ko_wt_up-485	chr16	31753932	31756516	+	0	NA	intron (NM_001252436, intron 1 of 22)	intron (NM_001252436, intron 1 of 22)	874	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding
h3k27me3_het_wt_down-4	chr11	88967974	88970784	+	0	NA	Intergenic	Intergenic	-2462	NR_003564	217066	Mm.347543	NM_001025564	ENSMUSG00000057534	Gm15698	OTTMUSG00000001305|OTTMUSG00000025408	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo
h3k27me3_ko_wt_up-34	chr1	183189392	183190873	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	31397	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-528	chr15	56856225	56860591	+	0	NA	Intergenic	Intergenic	-163862	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding
h3k27ac_ko_wt_up-125	chr6	22442964	22443631	+	0	NA	Intergenic	Intergenic	-87216	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding
h3k27me3_ko_wt_up-286	chr12	117114760	117117148	+	0	NA	intron (NM_011215, intron 12 of 22)	intron (NM_011215, intron 12 of 22)	35315	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA
h3k4me3_ko_wt_down-192	chr17	50966296	50968438	+	0	NA	intron (NM_028162, intron 5 of 21)	intron (NM_028162, intron 5 of 21)	192011	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding
h3k4me3_ko_wt_up-391	chr12	29290475	29291701	+	0	NA	Intergenic	Intergenic	-237296	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding
h3k27me3_ko_wt_down-89	chr2	173789748	173790883	+	0	NA	Intergenic	Intergenic	52744	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding
h3k27me3_ko_wt_down-218	chr5	46451178	46452415	+	0	NA	Intergenic	Intergenic	-519387	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
h3k27me3_ko_wt_down-530	chr15	92521038	92522115	+	0	NA	intron (NM_001164593, intron 3 of 9)	intron (NM_001164593, intron 3 of 9)	-75533	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding
h3k27me3_ko_wt_down-241	chr5	95921286	95922790	+	0	NA	Intergenic	L1M5|LINE|L1	-34901	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding
h3k27me3_ko_wt_up-329	chr14	80688886	80691464	+	0	NA	Intergenic	Intergenic	689873	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding
h3k27ac_ko_wt_down-247	chr13	51289591	51290343	+	0	NA	Intergenic	Intergenic	-86901	NR_132443	667728		NR_132443	ENSMUSG00000091383	Hist1h2al	EG667728	histone cluster 1, H2al	pseudo
h3k4me3_ko_wt_up-395	chr12	50190846	50193399	+	0	NA	Intergenic	Intergenic	457101	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
h3k27ac_ko_wt_up-121	chr5	99250420	99252380	+	0	NA	intron (NM_181318, intron 1 of 13)	intron (NM_181318, intron 1 of 13)	1527	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000029333	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding
h3k27ac_ko_wt_up-139	chr7	25816230	25816804	+	0	NA	promoter-TSS (NM_028775)	promoter-TSS (NM_028775)	13	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding
h3k27me3_ko_wt_down-536	chr16	57431323	57435794	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	80281	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding
h3k4me3_ko_wt_up-289	chr8	83668209	83668761	+	0	NA	exon (NM_013641, exon 2 of 3)	exon (NM_013641, exon 2 of 3)	1845	NM_013641	19216	Mm.213000	NM_013641		Ptger1	42kDa|EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding
h3k4me3_ko_wt_up-288	chr8	71628631	71630057	+	0	NA	3' UTR (NM_001029873, exon 42 of 42)	3' UTR (NM_001029873, exon 42 of 42)	1762	NR_106035	102466799		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA
h3k4me3_ko_wt_up-481	chr16	13160102	13160782	+	0	NA	Intergenic	Intergenic	50706	NM_015769	50505	Mm.287837	NM_015769		Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding
h3k27ac_ko_wt_up-138	chr6	148046834	148047811	+	0	NA	promoter-TSS (NM_178797)	promoter-TSS (NM_178797)	-94	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding
h3k27me3_ko_wt_up-356	chr15	35820692	35821871	+	0	NA	intron (NM_177151, intron 39 of 61)	intron (NM_177151, intron 39 of 61)	116965	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding
h3k27me3_ko_wt_down-532	chr16	28448789	28449622	+	0	NA	intron (NM_010199, intron 2 of 5)	intron (NM_010199, intron 2 of 5)	-3130	NM_183064	14167	Mm.7996	NM_010199		Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding
h3k27ac_ko_wt_down-56	chr2	149777553	149777793	+	0	NA	Intergenic	Intergenic	-53110	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding
h3k27me3_ko_wt_down-297	chr8	24630460	24631648	+	0	NA	intron (NM_010084, intron 14 of 19)	Lx9|LINE|L1	-34102	NM_008324	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding
h3k27me3_ko_wt_up	chr1	12238658	12240207	+	0	NA	Intergenic	Intergenic	-186554	NR_105759	102465961		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA
h3k4me3_ko_wt_down-67	chr6	25183310	25184340	+	0	NA	Intergenic	Intergenic	-227700	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
h3k27ac_ko_wt_up-107	chr4	97844220	97845565	+	0	NA	intron (NM_010905, intron 2 of 10)	intron (NM_010905, intron 2 of 10)	67266	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding
h3k27me3_ko_wt_up-90	chr2	169584620	169585548	+	0	NA	Intergenic	Intergenic	-48562	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding
h3k4me3_ko_wt_down-96	chr8	11496908	11498413	+	0	NA	promoter-TSS (NM_026995)	promoter-TSS (NM_026995)	92	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Carkd	0710008K08Rik|2810407E01Rik	carbohydrate kinase domain containing	protein-coding
h3k27me3_ko_wt_down-187	chr4	91584056	91589058	+	0	NA	Intergenic	Intergenic	-186573	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding
h3k27me3_ko_wt_down-17	chr1	61417466	61418839	+	0	NA	Intergenic	Intergenic	39720	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA
h3k27me3_ko_wt_down-237	chr5	86467208	86469067	+	0	NA	intron (NM_001033233, intron 1 of 8)	intron (NM_001033233, intron 1 of 8)	853	NM_001033233	194597	Mm.249106	NM_001033233	ENSMUSG00000072845	Tmprss11a	Gm7	transmembrane protease, serine 11a	protein-coding
h3k27me3_ko_wt_down-315	chr8	44830967	44837100	+	0	NA	Intergenic	Intergenic	-116175	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT tumor suppressor homolog 1 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-111	chr5	46023315	46024058	+	0	NA	Intergenic	Intergenic	-91277	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA
h3k4me3_ko_wt_down-86	chr7	84779125	84780263	+	0	NA	Intergenic	Intergenic	-73877	NM_146415	258410	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding
h3k4me3_ko_wt_up-502	chr17	17345608	17346465	+	0	NA	Intergenic	CpG	-28296	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding
h3k27me3_ko_wt_up-518	chrX	169761502	169763118	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	17325	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k27me3_ko_wt_up-465	chrX	94251423	94256009	+	0	NA	3' UTR (NM_001039060, exon 4 of 4)	3' UTR (NM_001039060, exon 4 of 4)	18786	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding
h3k27ac_ko_wt_down-312	chr17	52347756	52349461	+	0	NA	Intergenic	Intergenic	-254101	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
h3k27ac_ko_wt_up-67	chr2	177464739	177465764	+	0	NA	intron (NM_001177568, intron 1 of 3)	RMER17B|LTR|ERVK	509	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
h3k27ac_ko_wt_down-184	chr9	77264721	77266254	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	82383	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
h3k4me3_ko_wt_down-72	chr6	64649542	64650125	+	0	NA	intron (NM_008167, intron 14 of 15)	intron (NM_008167, intron 14 of 15)	-79313	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k27me3_ko_wt_down-592	chr18	13847805	13851140	+	0	NA	intron (NM_145492, intron 3 of 7)	intron (NM_145492, intron 3 of 7)	123261	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k4me3_ko_wt_down-141	chr11	98019662	98023468	+	0	NA	intron (NM_031173, intron 1 of 12)	intron (NM_031173, intron 1 of 12)	1062	NM_001282978	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding
h3k4me3_ko_wt_up-135	chr4	22835164	22836312	+	0	NA	Intergenic	Intergenic	345190	NR_131335	105500046		NR_131335		Pnky	-	long intergenic non-protein coding RNA Pnky	ncRNA
h3k27ac_ko_wt_up-285	chrX	50580437	50581033	+	0	NA	non-coding (NR_015505, exon 15 of 20)	non-coding (NR_015505, exon 15 of 20)	43346	NR_131207	102639259	Mm.350898	NR_131207		Gm35612	-	predicted gene, 35612	ncRNA
h3k27me3_het_wt_up-12	chr2	145734551	145735819	+	0	NA	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	33990	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA
h3k27me3_ko_wt_down-62	chr2	56454452	56456899	+	0	NA	Intergenic	Intergenic	-330136	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
h3k27me3_ko_wt_down-596	chr18	13873593	13879206	+	0	NA	intron (NM_145492, intron 3 of 7)	L1MB2|LINE|L1	96334	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding
h3k27me3_ko_wt_down-562	chr17	33071166	33074628	+	0	NA	Intergenic	Intergenic	-4839	NM_001009544	74042	Mm.84774	NM_001009544	ENSMUSG00000023350	4921501E09Rik	PHF8	RIKEN cDNA 4921501E09 gene	protein-coding
h3k27me3_ko_wt_down-103	chr3	110138651	110141242	+	0	NA	intron (NM_133488, intron 1 of 6)	intron (NM_133488, intron 1 of 6)	3526	NM_001163351	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding
h3k4me3_ko_wt_up-242	chr7	25688525	25689695	+	0	NA	intron (NM_011577, intron 1 of 6)	intron (NM_011577, intron 1 of 6)	2108	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding
h3k4me3_ko_wt_up-14	chr1	83159612	83159994	+	0	NA	promoter-TSS (NM_027725)	promoter-TSS (NM_027725)	41	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding
h3k4me3_ko_wt_up-115	chr3	82903465	82904755	+	0	NA	promoter-TSS (NM_023624)	promoter-TSS (NM_023624)	-136	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding
h3k27me3_ko_wt_down-566	chr17	43856039	43858638	+	0	NA	intron (NM_207649, intron 2 of 4)	intron (NM_207649, intron 2 of 4)	53335	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding
h3k27ac_ko_wt_up-155	chr8	66182722	66183662	+	0	NA	intron (NM_001293784, intron 4 of 8)	intron (NM_001293784, intron 4 of 8)	-203109	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
h3k4me3_ko_wt_down-18	chr2	73560729	73561987	+	0	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	18980	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding
h3k4me3_ko_wt_up-554	chr18	80982061	80990026	+	0	NA	intron (NM_178280, intron 1 of 3)	CpG	535	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-282	chr14	107687223	107688022	+	0	NA	Intergenic	Intergenic	-1201102	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
h3k27me3_ko_wt_down-94	chr3	23585934	23589253	+	0	NA	Intergenic	B4|SINE|B4	1336223	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA
h3k27me3_ko_wt_down-311	chr8	38601483	38608939	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	56297	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k27me3_ko_wt_down-348	chr10	19449321	19451376	+	0	NA	Intergenic	Intergenic	93809	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20	oligodendrocyte transcription factor 3	protein-coding
h3k4me3_ko_wt_up-60	chr2	60036811	60037841	+	0	NA	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	88414	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding
h3k4me3_ko_wt_up-143	chr4	45798665	45799920	+	0	NA	intron (NM_028270, intron 1 of 1)	intron (NM_028270, intron 1 of 1)	270	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding
h3k27me3_ko_wt_up-64	chr2	96053134	96054184	+	0	NA	Intergenic	Intergenic	-264510	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27me3_ko_wt_up-436	chrX	12004887	12005926	+	0	NA	Intergenic	Intergenic	75147	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_up-258	chr11	64264682	64268534	+	0	NA	Intergenic	Intergenic	-168724	NM_178870	15478	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
h3k27me3_ko_wt_down-474	chr14	46768975	46774352	+	0	NA	TTS (NM_028222)	TTS (NM_028222)	11122	NM_028222	72391	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding
h3k4me3_ko_wt_up-2	chr1	20477701	20478841	+	0	NA	intron (NM_153179, intron 35 of 66)	intron (NM_153179, intron 35 of 66)	121817	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA
h3k27me3_ko_wt_down-267	chr6	137540530	137543374	+	0	NA	intron (NM_001271588, intron 1 of 20)	B4|SINE|B4	-22057	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding
h3k4me3_ko_wt_up-59	chr2	57102249	57103257	+	0	NA	Intergenic	CpG	12285	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding
h3k4me3_ko_wt_up-161	chr4	129795082	129796166	+	0	NA	Intergenic	Intergenic	-24855	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding
h3k4me3_ko_wt_up-387	chr11	117415095	117416177	+	0	NA	TTS (NR_132097)	TTS (NR_132097)	1247	NR_132097	105827746	Mm.388009	NR_132097		Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA
h3k4me3_ko_wt_up-158	chr4	120715591	120716766	+	0	NA	intron (NM_001081142, intron 4 of 13)	intron (NM_001081142, intron 4 of 13)	30998	NM_001081142	60613	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding
h3k27me3_ko_wt_down-38	chr1	102824760	102827188	+	0	NA	Intergenic	Intergenic	1670206	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27me3_ko_wt_up-408	chr17	66784565	66786676	+	0	NA	intron (NM_008984, intron 17 of 30)	intron (NM_008984, intron 17 of 30)	-190998	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding
h3k27me3_ko_wt_down-119	chr3	126825095	126828287	+	0	NA	intron (NM_001293665, intron 15 of 19)	intron (NM_001293665, intron 15 of 19)	116695	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	AI835472|AW491075|Ank-2	ankyrin 2, brain	protein-coding
h3k27ac_ko_wt_up-8	chr1	42152283	42152723	+	0	NA	Intergenic	Intergenic	542322	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
h3k27ac_ko_wt_down-200	chr10	27133403	27134317	+	0	NA	intron (NM_008481, intron 34 of 63)	intron (NM_008481, intron 34 of 63)	-256006	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
h3k27me3_ko_wt_up-156	chr6	43169300	43170623	+	0	NA	intron (NR_126471, intron 1 of 3)	L1MA4|LINE|L1	2355	NR_126472	75520	Mm.416852	NR_126471		1700024N05Rik	-	RIKEN cDNA 1700024N05 gene	ncRNA
h3k27ac_ko_wt_up-118	chr5	54061562	54062379	+	0	NA	intron (NM_001081103, intron 2 of 11)	intron (NM_001081103, intron 2 of 11)	63447	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding
h3k4me3_het_wt_down	chr3	120883733	120886858	+	0	NA	intron (NR_130170, intron 1 of 18)	intron (NR_130170, intron 1 of 18)	1437	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA
h3k4me3_ko_wt_up-159	chr4	124277229	124278259	+	0	NA	Intergenic	CpG	208215	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA
h3k27ac_ko_wt_down-108	chr5	40394675	40395597	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-750505	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
h3k4me3_ko_wt_down-158	chr13	29854407	29855928	+	0	NA	intron (NR_131896, intron 1 of 16)	intron (NR_131896, intron 1 of 16)	506	NM_001308486	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
h3k4me3_het_wt_up-9	chr2	98666598	98667103	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	1199193	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_ko_wt_up-177	chr5	15506618	15507160	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	22333	NM_001310449	100861755	Mm.382859	NM_001310449		Gm21190	-	predicted gene, 21190	protein-coding
h3k27me3_ko_wt_down-377	chr11	18621237	18622983	+	0	NA	Intergenic	Intergenic	396859	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding
h3k27me3_ko_wt_down-608	chr18	83607110	83611112	+	0	NA	Intergenic	Intergenic	-283227	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA
h3k27ac_ko_wt_up-119	chr5	70659271	70659691	+	0	NA	Intergenic	Intergenic	183136	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding
h3k27me3_ko_wt_up-129	chr5	37239888	37241786	+	0	NA	Intergenic	Intergenic	-1221	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding
h3k27ac_ko_wt_down-98	chr4	142983162	142983892	+	0	NA	Intergenic	L1M5|LINE|L1	152635	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
h3k27ac_ko_wt_down-77	chr3	116984833	116986369	+	0	NA	Intergenic	Intergenic	-16649	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
h3k27me3_ko_wt_up-14	chr1	77951438	77953188	+	0	NA	Intergenic	Intergenic	244823	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding
h3k4me3_ko_wt_up-106	chr3	16816964	16820489	+	0	NA	Intergenic	Intergenic	635543	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
h3k27ac_ko_wt_down-88	chr4	20161947	20162549	+	0	NA	intron (NM_001290410, intron 4 of 5)	intron (NM_001290410, intron 4 of 5)	120196	NM_010281	14590	Mm.20461	NM_010281		Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding
h3k27me3_ko_wt_down-245	chr5	105960570	105962773	+	0	NA	Intergenic	Intergenic	85103	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding
h3k27me3_ko_wt_down-86	chr2	127187048	127188907	+	0	NA	intron (NM_198630, intron 1 of 1)	intron (NM_198630, intron 1 of 1)	20303	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding
h3k27me3_ko_wt_up-116	chr4	31426024	31426929	+	0	NA	Intergenic	Intergenic	-537631	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k4me3_ko_wt_up-165	chr4	137707152	137707940	+	0	NA	intron (NM_001081155, intron 3 of 24)	CpG	25879	NM_001081155	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding
h3k27me3_ko_wt_up-388	chr16	40462170	40464805	+	0	NA	Intergenic	Intergenic	-1069855	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding
h3k27me3_ko_wt_up-72	chr2	105474380	105475571	+	0	NA	Intergenic	Intergenic	-75656	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding
h3k27ac_ko_wt_down-269	chr14	63976726	63977323	+	0	NA	intron (NM_026359, intron 2 of 3)	intron (NM_026359, intron 2 of 3)	10756	NM_026359	67750	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding
h3k4me3_ko_wt_down-164	chr13	109926228	109930903	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	24756	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
h3k27ac_ko_wt_down-199	chr10	24999893	25000594	+	0	NA	Intergenic	Intergenic	-72773	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding
h3k27me3_ko_wt_up-218	chr9	82033951	82037361	+	0	NA	Intergenic	Intergenic	171912	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiosis-specific, MEI4 homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-398	chr17	5493443	5495607	+	0	NA	intron (NM_146073, intron 1 of 8)	intron (NM_146073, intron 1 of 8)	1925	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding
h3k4me3_ko_wt_up-497	chr17	5189446	5190598	+	0	NA	intron (NM_001085355, intron 4 of 19)	CpG	194948	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding
h3k27me3_ko_wt_up-377	chr16	17276885	17278237	+	0	NA	exon (NM_177473, exon 7 of 10)	exon (NM_177473, exon 7 of 10)	1261	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding
h3k27me3_ko_wt_up-424	chr18	86471776	86475242	+	0	NA	intron (NM_144946, intron 6 of 10)	intron (NM_144946, intron 6 of 10)	78557	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding
h3k27ac_ko_wt_down-62	chr3	17582108	17583780	+	0	NA	Intergenic	Intergenic	-206977	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
h3k27ac_ko_wt_up-4	chr1	6738934	6739522	+	0	NA	intron (NM_001244692, intron 3 of 23)	intron (NM_001244692, intron 3 of 23)	9177	NM_173868	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding
h3k27ac_ko_wt_up-169	chr9	84696644	84697145	+	0	NA	Intergenic	L1MA9|LINE|L1	-77504	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA
h3k27ac_ko_wt_down-193	chr10	10085639	10086922	+	0	NA	Intergenic	Intergenic	-185240	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
h3k27me3_ko_wt_down-405	chr12	46691048	46694938	+	0	NA	Intergenic	Intergenic	125782	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding
h3k27ac_ko_wt_down-263	chr14	36916747	36917502	+	0	NA	intron (NM_028407, intron 3 of 7)	intron (NM_028407, intron 3 of 7)	18444	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding
h3k27ac_ko_wt_up-168	chr9	83387072	83388161	+	0	NA	Intergenic	Intergenic	-43931	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
h3k4me3_ko_wt_up-111	chr3	54914393	54916541	+	0	NA	intron (NM_177854, intron 1 of 2)	intron (NM_177854, intron 1 of 2)	420	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding
h3k4me3_ko_wt_down-130	chr11	12463665	12465626	+	0	NA	intron (NM_001282993, intron 1 of 13)	CpG	315	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
h3k27me3_ko_wt_down-560	chr17	3638068	3642983	+	0	NA	intron (NM_198958, intron 12 of 12)	intron (NM_198958, intron 12 of 12)	55736	NM_198958	224480	Mm.328756	NM_198958	ENSMUSG00000023802	Nox3	GP91-3|het|nmf250	NADPH oxidase 3	protein-coding
h3k4me3_ko_wt_down-58	chr5	72867169	72868909	+	0	NA	intron (NM_013689, intron 1 of 17)	intron (NM_013689, intron 1 of 17)	409	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding
h3k27ac_ko_wt_up-151	chr8	16057553	16058514	+	0	NA	intron (NM_053171, intron 37 of 69)	intron (NM_053171, intron 37 of 69)	110805	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
h3k27me3_ko_wt_up-362	chr15	64141453	64144455	+	0	NA	intron (NM_001276462, intron 11 of 27)	intron (NM_001276462, intron 11 of 27)	-82506	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding
h3k27me3_ko_wt_up-470	chrX	94277701	94279727	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	4140	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27me3_ko_wt_down-25	chr1	69332153	69333903	+	0	NA	Intergenic	Intergenic	-224969	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)	protein-coding
h3k27me3_ko_wt_down-50	chr1	170262682	170266222	+	0	NA	Intergenic	Intergenic	-12872	NM_012009	26904	Mm.57009	NM_012009		Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding
h3k4me3_ko_wt_up-157	chr4	109154723	109157363	+	0	NA	intron (NM_133885, intron 3 of 22)	intron (NM_133885, intron 3 of 22)	-38007	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding
h3k27ac_ko_wt_down-333	chrX	136610995	136611817	+	0	NA	Intergenic	Intergenic	-54969	NM_001029978	594844	Mm.260515	NM_001029978	ENSMUSG00000044550	Tceal3	1100001D19Rik	transcription elongation factor A (SII)-like 3	protein-coding
h3k4me3_ko_wt_up-179	chr5	26006892	26007742	+	0	NA	Intergenic	Intergenic	-2590	NM_001281519	100038949		NM_001281519	ENSMUSG00000091049	Gm1979	-	predicted gene 1979	protein-coding
h3k27ac_ko_wt_up-117	chr5	47983132	47985050	+	0	NA	non-coding (NR_111900, exon 1 of 36)	non-coding (NR_111900, exon 1 of 36)	936	NM_001291227	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding
h3k27me3_ko_wt_up-415	chr18	58632657	58643777	+	0	NA	Intergenic	Intergenic	-21265	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding
h3k27me3_ko_wt_down-374	chr11	18407747	18412351	+	0	NA	Intergenic	L1ME2|LINE|L1	314063	NR_131129	327872		NR_131129		Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA
h3k27me3_ko_wt_down-579	chr18	4076266	4081538	+	0	NA	Intergenic	Intergenic	-86930	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
h3k27me3_ko_wt_up-407	chr17	64787895	64789372	+	0	NA	Intergenic	Intergenic	21522	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA
h3k4me3_ko_wt_up-178	chr5	16554633	16555702	+	0	NA	intron (NM_001289458, intron 2 of 18)	intron (NM_001289458, intron 2 of 18)	1266	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding
h3k27me3_ko_wt_down-585	chr18	6148354	6151757	+	0	NA	Intergenic	B4|SINE|B4	-13957	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding
h3k27me3_ko_wt_up-432	chr19	25360362	25364022	+	0	NA	intron (NM_181404, intron 3 of 13)	intron (NM_181404, intron 3 of 13)	124990	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding
h3k27me3_ko_wt_down-558	chr16	86543621	86545062	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-643216	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding
h3k4me3_ko_wt_up-295	chr8	119992167	119992911	+	0	NA	5' UTR (NM_030209, exon 1 of 15)	5' UTR (NM_030209, exon 1 of 15)	101	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding
h3k27me3_ko_wt_down-208	chr4	141959575	141960105	+	0	NA	intron (NM_177868, intron 9 of 31)	intron (NM_177868, intron 9 of 31)	-23152	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA
h3k27me3_ko_wt_down-264	chr6	106745888	106746995	+	0	NA	intron (NM_008370, intron 1 of 12)	intron (NM_008370, intron 1 of 12)	2596	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding
h3k4me3_ko_wt_up-389	chr11	120643110	120643941	+	0	NA	5' UTR (NM_144795, exon 1 of 8)	5' UTR (NM_144795, exon 1 of 8)	145	NM_144795	209027	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	-	pyrroline-5-carboxylate reductase 1	protein-coding
h3k4me3_ko_wt_down-195	chr18	30267044	30269441	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-4654	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding
h3k27me3_ko_wt_down-477	chr14	47211213	47214303	+	0	NA	Intergenic	L1VL2|LINE|L1	-23356	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding
h3k27me3_ko_wt_down-48	chr1	143206220	143208374	+	0	NA	Intergenic	Intergenic	-433400	NM_020025	26878	Mm.285580	NM_020025		B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding
h3k27me3_ko_wt_up-152	chr6	36386995	36390326	+	0	NA	promoter-TSS (NR_015589)	promoter-TSS (NR_015589)	-426	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA
h3k4me3_ko_wt_up-388	chr11	118998809	118999935	+	0	NA	Intergenic	Intergenic	11184	NM_001030291	238011	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding
h3k27me3_ko_wt_up-257	chr11	64257174	64263332	+	0	NA	Intergenic	Intergenic	-175079	NM_178870	15478	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding
h3k27ac_ko_wt_up-126	chr6	47239159	47240138	+	0	NA	intron (NM_001004357, intron 21 of 23)	intron (NM_001004357, intron 21 of 23)	-4748	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k4me3_het_wt_up-12	chr2	172550328	172553239	+	0	NA	exon (NM_001159696, exon 2 of 7)	exon (NM_001159696, exon 2 of 7)	792	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding
h3k27me3_ko_wt_up-300	chr13	51407558	51409773	+	0	NA	promoter-TSS (NM_010101)	promoter-TSS (NM_010101)	47	NM_010101	13610	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding
h3k27me3_het_wt_down-25	chrX	169694019	169697466	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	10543	NM_010797	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding
h3k27ac_ko_wt_up-244	chr15	71541982	71542950	+	0	NA	intron (NM_177819, intron 3 of 19)	intron (NM_177819, intron 3 of 19)	185372	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
h3k4me3_ko_wt_up-574	chrX	23294391	23295324	+	0	NA	intron (NM_026167, intron 3 of 8)	intron (NM_026167, intron 3 of 8)	-9298	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding
h3k4me3_ko_wt_up-486	chr16	32661181	32662715	+	0	NA	intron (NM_016788, intron 1 of 15)	intron (NM_016788, intron 1 of 15)	6249	NR_033493	675921	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	ENSMUSG00000075265|Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA
h3k27ac_ko_wt_down-272	chr14	84223073	84223953	+	0	NA	Intergenic	Lx7|LINE|L1	-220050	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
h3k27ac_ko_wt_up-175	chr10	28492512	28493607	+	0	NA	exon (NM_008983, exon 12 of 32)	exon (NM_008983, exon 12 of 32)	-175301	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding
h3k27me3_ko_wt_down-411	chr12	48387383	48390666	+	0	NA	Intergenic	Intergenic	-87562	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA
h3k27me3_ko_wt_down-448	chr13	19696210	19698966	+	0	NA	intron (NM_001167909, intron 1 of 14)	intron (NM_001167909, intron 1 of 14)	172	NM_181591	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding
h3k4me3_ko_wt_down-17	chr2	69646799	69648058	+	0	NA	intron (NM_028284, intron 1 of 11)	CpG	173	NM_028284	72569	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding
h3k4me3_ko_wt_up-63	chr2	72285804	72286660	+	0	NA	intron (NM_178084, intron 1 of 9)	CpG	531	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Zak	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta	sterile alpha motif and leucine zipper containing kinase AZK	protein-coding
h3k4me3_ko_wt_up-512	chr17	36031796	36032485	+	0	NA	intron (NM_010398, intron 2 of 6)	intron (NM_010398, intron 2 of 6)	561	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding
h3k27me3_ko_wt_up-490	chrX	103696011	103697492	+	0	NA	TTS (NM_009197)	TTS (NM_009197)	66165	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding
h3k27me3_ko_wt_down-305	chr8	34808965	34812103	+	0	NA	intron (NM_176933, intron 1 of 3)	intron (NM_176933, intron 1 of 3)	2924	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding
h3k27ac_ko_wt_down-110	chr5	45111344	45112156	+	0	NA	intron (NR_131933, intron 5 of 5)	intron (NR_131933, intron 5 of 5)	145549	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
h3k27ac_ko_wt_down-223	chr12	35401284	35402214	+	0	NA	Intergenic	Intergenic	133240	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding
h3k4me3_het_wt_down-18	chr17	30611473	30612842	+	0	NA	intron (NM_001113560, intron 1 of 6)	intron (NM_001113560, intron 1 of 6)	502	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding
h3k27ac_ko_wt_down-315	chr17	93489812	93490333	+	0	NA	Intergenic	Intergenic	290904	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
h3k4me3_ko_wt_down-57	chr5	36482730	36484974	+	0	NA	promoter-TSS (NM_025725)	promoter-TSS (NM_025725)	433	NM_001170454	231151	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding
h3k27me3_ko_wt_up-480	chrX	103352817	103355006	+	0	NA	Intergenic	ID_B1|SINE|B4	-2565	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx	cysteine-rich hydrophobic domain 1	protein-coding
h3k27me3_ko_wt_up-423	chr18	84246051	84248090	+	0	NA	intron (NM_001033341, intron 8 of 8)	L1MA5A|LINE|L1	158912	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding
h3k27ac_ko_wt_up-171	chr9	99435306	99437324	+	0	NA	5' UTR (NM_008624, exon 1 of 6)	5' UTR (NM_008624, exon 1 of 6)	397	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding
h3k27ac_ko_wt_down-66	chr3	45403053	45403665	+	0	NA	intron (NM_001098170, intron 4 of 4)	intron (NM_001098170, intron 4 of 4)	24961	NM_001098171	18526	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding
h3k27ac_ko_wt_down-218	chr11	40784006	40785091	+	0	NA	Intergenic	Intergenic	-29262	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
h3k27me3_ko_wt_up-441	chrX	12092067	12093518	+	0	NA	intron (NM_001168321, intron 1 of 13)	intron (NM_001168321, intron 1 of 13)	-12239	NM_175046	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding
h3k27me3_ko_wt_down-65	chr2	57376725	57378713	+	0	NA	Intergenic	Intergenic	139337	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
h3k27me3_ko_wt_up-366	chr15	79040365	79044176	+	0	NA	exon (NM_015738, exon 1 of 2)	exon (NM_015738, exon 1 of 2)	385	NM_015738	14429	Mm.390805	NM_015738	ENSMUSG00000006378	Galr3	Galnr3	galanin receptor 3	protein-coding
h3k4me3_ko_wt_down-140	chr11	97041137	97042306	+	0	NA	promoter-TSS (NM_027026)	promoter-TSS (NM_027026)	135	NM_026154	107732	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding
h3k4me3_ko_wt_up-396	chr12	54199709	54204100	+	0	NA	intron (NM_028133, intron 1 of 4)	intron (NM_028133, intron 1 of 4)	1970	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding
h3k27ac_ko_wt_up-167	chr9	82246096	82246314	+	0	NA	Intergenic	Intergenic	382461	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiosis-specific, MEI4 homolog (S. cerevisiae)	protein-coding
h3k27me3_ko_wt_up-112	chr3	150651785	150652676	+	0	NA	Intergenic	Intergenic	-785652	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
h3k27me3_ko_wt_up-378	chr16	18087827	18089178	+	0	NA	intron (NM_011172, intron 1 of 13)	intron (NM_011172, intron 1 of 13)	688	NM_011172	19125	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding
h3k4me3_ko_wt_up-499	chr17	8388689	8389631	+	0	NA	non-coding (NR_045795, exon 1 of 3)	non-coding (NR_045795, exon 1 of 3)	308	NR_045795	100504601	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA
h3k27me3_ko_wt_up-205	chr8	79423113	79423843	+	0	NA	Intergenic	L1_Rod|LINE|L1	-24010	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding
h3k4me3_ko_wt_up-562	chr19	15800999	15802479	+	0	NA	Intergenic	Intergenic	122883	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding
h3k27me3_ko_wt_up-135	chr5	90630881	90633045	+	0	NA	intron (NM_001310656, intron 1 of 10)	intron (NM_001310656, intron 1 of 10)	8564	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding
h3k27me3_ko_wt_up-217	chr9	62091101	62092795	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-21342	NM_033320	93683	Mm.24411	NM_033320	ENSMUSG00000032252	Glce	1110017N23Rik|AI747411|C130034A12Rik|Hsepi	glucuronyl C5-epimerase	protein-coding
h3k27me3_ko_wt_up-397	chr16	94992646	94997321	+	0	NA	intron (NM_001025584, intron 1 of 4)	intron (NM_001025584, intron 1 of 4)	2713	NM_010606	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding
h3k27me3_ko_wt_up-52	chr2	77812826	77816495	+	0	NA	intron (NM_178723, intron 1 of 9)	intron (NM_178723, intron 1 of 9)	2156	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding
h3k4me3_ko_wt_up-498	chr17	6315715	6317719	+	0	NA	intron (NM_001166629, intron 1 of 4)	intron (NM_001166629, intron 1 of 4)	757	NM_001166629	100310872	Mm.381893	NM_001166629		Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding
h3k4me3_ko_wt_up-136	chr4	23636132	23636682	+	0	NA	Intergenic	Intergenic	-860055	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k4me3_ko_wt_up-444	chr14	55520314	55521199	+	0	NA	exon (NM_001136074, exon 4 of 4)	exon (NM_001136074, exon 4 of 4)	3496	NM_008736	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding
h3k4me3_ko_wt_up-291	chr8	106602986	106603614	+	0	NA	promoter-TSS (NM_009864)	promoter-TSS (NM_009864)	-50	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding
h3k27ac_ko_wt_up-286	chrX	50597510	50597948	+	0	NA	intron (NR_015505, intron 10 of 19)	intron (NR_015505, intron 10 of 19)	37592	NR_015505	103012	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA
h3k4me3_ko_wt_up-580	chrX	96095833	96097445	+	0	NA	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	594	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding
h3k27me3_ko_wt_up-387	chr16	40192312	40193648	+	0	NA	Intergenic	Intergenic	1290635	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
h3k27me3_ko_wt_up-455	chrX	94080932	94082424	+	0	NA	intron (NM_011768, intron 5 of 7)	intron (NM_011768, intron 5 of 7)	41729	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding
h3k27ac_ko_wt_down-87	chr4	19755181	19755757	+	0	NA	Intergenic	Intergenic	-46465	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding
h3k27me3_ko_wt_down-76	chr2	95122911	95124292	+	0	NA	Intergenic	L1MB8|LINE|L1	-685415	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding
h3k27ac_ko_wt_down-78	chr3	117001293	117002098	+	0	NA	Intergenic	Intergenic	-32743	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
h3k27ac_ko_wt_up-62	chr2	141508405	141509197	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-837325	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding
h3k4me3_ko_wt_down-124	chr10	77522028	77522941	+	0	NA	Intergenic	Intergenic	-6671	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding
h3k27ac_ko_wt_down-304	chr16	54245825	54247083	+	0	NA	Intergenic	Intergenic	1036783	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
h3k27ac_ko_wt_down-229	chr12	63219988	63220762	+	0	NA	Intergenic	Intergenic	532588	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
h3k27ac_ko_wt_down-97	chr4	76379879	76380912	+	0	NA	intron (NM_011211, intron 10 of 39)	ORR1F|LTR|ERVL-MaLR	-1102109	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
h3k27me3_ko_wt_down-79	chr2	105610749	105614585	+	0	NA	intron (NR_002867, intron 1 of 3)	intron (NR_002867, intron 1 of 3)	48676	NR_117095	103164605	Mm.444995	NR_117095	ENSMUSG00000102424	Paupar	-	Pax6 upstream antisense RNA	ncRNA
h3k27me3_ko_wt_down-142	chr4	7997066	7998260	+	0	NA	Intergenic	Intergenic	241378	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
h3k27ac_ko_wt_down-35	chr1	194884984	194885557	+	0	NA	Intergenic	MIRb|SINE|MIR	-53551	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding
h3k27ac_ko_wt_down-12	chr1	43542817	43544578	+	0	NA	intron (NM_010879, intron 3 of 4)	intron (NM_010879, intron 3 of 4)	97946	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
h3k4me3_ko_wt_down-30	chr3	49094068	49094831	+	0	NA	Intergenic	Intergenic	-485349	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo
h3k27me3_ko_wt_up-276	chr12	16798968	16804320	+	0	NA	promoter-TSS (NM_015764)	promoter-TSS (NM_015764)	-758	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding
h3k27me3_ko_wt_up-83	chr2	165472065	165473707	+	0	NA	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	311	NM_054055	114644	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding
h3k4me3_ko_wt_down-2	chr1	32172244	32177044	+	0	NA	intron (NM_133235, intron 1 of 8)	intron (NM_133235, intron 1 of 8)	1838	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
h3k4me3_ko_wt_down-49	chr4	120924035	120925772	+	0	NA	5' UTR (NM_028457, exon 1 of 2)	5' UTR (NM_028457, exon 1 of 2)	102	NM_028457	73172	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding
h3k27ac_ko_wt_down-226	chr12	51240887	51242990	+	0	NA	Intergenic	Intergenic	-106292	NM_001015099	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
h3k27me3_ko_wt_down-146	chr4	44661097	44666287	+	0	NA	intron (NM_008782, intron 5 of 9)	intron (NM_008782, intron 5 of 9)	-39108	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA
h3k27ac_ko_wt_up-156	chr8	66363305	66363895	+	0	NA	intron (NM_175188, intron 4 of 7)	intron (NM_175188, intron 4 of 7)	-22701	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
h3k27me3_ko_wt_up-187	chr7	75124770	75125680	+	0	NA	intron (NM_153579, intron 10 of 12)	intron (NM_153579, intron 10 of 12)	95014	NR_131122	75205	Mm.399304	NR_131122		4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA
h3k27me3_ko_wt_down-618	chr19	60701520	60703514	+	0	NA	Intergenic	L1MDa|LINE|L1	-53470	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-66	chr2	75002187	75002872	+	0	NA	Intergenic	Intergenic	176717	NM_016804	53375	Mm.292613	NM_016804		Mtx2	1500012G02Rik	metaxin 2	protein-coding
h3k27ac_ko_wt_down-237	chr13	6166897	6168239	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	306079	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding
h3k27me3_ko_wt_up-282	chr12	55559043	55561526	+	0	NA	Intergenic	Intergenic	-4921	NM_001277340	79459	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding
h3k4me3_ko_wt_up-116	chr3	86844842	86845629	+	0	NA	intron (NM_001195496, intron 2 of 16)	intron (NM_001195496, intron 2 of 16)	75649	NM_001195497	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
h3k27me3_ko_wt_up-335	chr14	123162040	123163570	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-5698	NR_045145	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA
h3k27ac_ko_wt_down-201	chr10	32812969	32814443	+	0	NA	intron (NM_001013411, intron 1 of 6)	intron (NM_001013411, intron 1 of 6)	76209	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
h3k27me3_ko_wt_up-197	chr8	36458408	36460319	+	0	NA	Intergenic	Intergenic	-29828	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding
h3k27ac_ko_wt_up-7	chr1	38037022	38037448	+	0	NA	exon (NM_198303, exon 11 of 24)	exon (NM_198303, exon 11 of 24)	39225	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding
h3k27me3_ko_wt_down-109	chr3	126716591	126720277	+	0	NA	intron (NM_001293665, intron 3 of 19)	intron (NM_001293665, intron 3 of 19)	121483	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_up-8	chr1	67056399	67058610	+	0	NA	Intergenic	Intergenic	-18632	NM_001190985	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding
h3k27me3_ko_wt_up-178	chr6	148619905	148620984	+	0	NA	Intergenic	Intergenic	-6135	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
h3k27me3_ko_wt_up-292	chr13	7525650	7526834	+	0	NA	Intergenic	Tigger5b|DNA|TcMar-Tigger	-676624	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27me3_ko_wt_up-312	chr14	13677924	13683061	+	0	NA	intron (NM_177624, intron 3 of 3)	intron (NM_177624, intron 3 of 3)	9616	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding
h3k4me3_ko_wt_up-101	chr2	177464691	177465658	+	0	NA	intron (NM_001177568, intron 1 of 3)	RMER17B|LTR|ERVK	432	NM_001177568	628308	Mm.460436	NM_001177568		Gm14420	OTTMUSG00000016588	predicted gene 14420	protein-coding
h3k27me3_ko_wt_down-113	chr3	126761770	126764915	+	0	NA	intron (NM_001293665, intron 4 of 19)	L1MA4|LINE|L1	166391	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27me3_ko_wt_up-166	chr6	64682983	64683884	+	0	NA	Intergenic	Intergenic	-45713	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal homolog 1 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-127	chr3	129754283	129755377	+	0	NA	non-coding (NR_040589, exon 2 of 5)	non-coding (NR_040589, exon 2 of 5)	492	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding
h3k27me3_ko_wt_down-301	chr8	30513472	30515723	+	0	NA	Intergenic	Intergenic	-53798	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA
h3k27ac_ko_wt_down-285	chr14	120578083	120579367	+	0	NA	Intergenic	Intergenic	100264	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding
h3k27me3_ko_wt_up-268	chr11	94471531	94473103	+	0	NA	intron (NM_001112813, intron 1 of 34)	intron (NM_001112813, intron 1 of 34)	1881	NM_001177890	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding
h3k27me3_ko_wt_down-73	chr2	85184536	85185964	+	0	NA	Intergenic	MLT1J2-int|LTR|ERVL-MaLR	11449	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding
h3k4me3_ko_wt_up-532	chr18	32559479	32560145	+	0	NA	exon (NM_001048207, exon 1 of 3)	exon (NM_001048207, exon 1 of 3)	222	NM_001048207	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding
h3k4me3_ko_wt_down-82	chr7	62208500	62209633	+	0	NA	Intergenic	Intergenic	-123756	NR_049204	100885843		NR_049204	ENSMUSG00000095154	Mir344i	Gm26031|mir-344i|mmu-mir-344i	microRNA 344i	ncRNA
h3k27me3_ko_wt_down-415	chr12	56351107	56358573	+	0	NA	Intergenic	L1MA9|LINE|L1	-8946	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding
h3k4me3_ko_wt_up-61	chr2	70127367	70128094	+	0	NA	intron (NM_177376, intron 8 of 34)	intron (NM_177376, intron 8 of 34)	88604	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding
h3k4me3_ko_wt_down-92	chr7	125551692	125552830	+	0	NA	promoter-TSS (NM_001008700)	promoter-TSS (NM_001008700)	-21	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding
h3k27ac_ko_wt_up-65	chr2	150450298	150451773	+	0	NA	intron (NM_001310645, intron 1 of 3)	intron (NM_001310645, intron 1 of 3)	466	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding
h3k27ac_ko_wt_down-174	chr8	67631457	67632740	+	0	NA	Intergenic	Intergenic	108244	NM_008674	17962	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding
h3k4me3_ko_wt_up-166	chr4	141598577	141600002	+	0	NA	intron (NM_133754, intron 1 of 8)	intron (NM_133754, intron 1 of 8)	635	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding
h3k27ac_ko_wt_up-58	chr2	132781050	132782463	+	0	NA	exon (NM_007694, exon 1 of 5)	exon (NM_007694, exon 1 of 5)	478	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding
h3k27me3_ko_wt_down-51	chr1	172549449	172550803	+	0	NA	intron (NR_040558, intron 1 of 2)	intron (NR_040558, intron 1 of 2)	680	NR_040558	71319	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA
h3k27me3_ko_wt_up-230	chr10	12559160	12560912	+	0	NA	intron (NM_011682, intron 50 of 73)	intron (NM_011682, intron 50 of 73)	301699	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding
h3k27me3_ko_wt_down-184	chr4	89677621	89678854	+	0	NA	Intergenic	Intergenic	-9961	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding
h3k27ac_ko_wt_down-327	chr18	87687442	87688129	+	0	NA	Intergenic	Intergenic	975720	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
h3k27me3_ko_wt_up-517	chrX	169736016	169737756	+	0	NA	intron (NM_010797, intron 1 of 9)	intron (NM_010797, intron 1 of 9)	42749	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo
h3k4me3_ko_wt_down-107	chr8	104170197	104171915	+	0	NA	intron (NM_001141925, intron 1 of 4)	CpG	543	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding
h3k27me3_ko_wt_down-22	chr1	62213296	62214518	+	0	NA	intron (NM_001081050, intron 12 of 22)	intron (NM_001081050, intron 12 of 22)	-489410	NM_010939	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding
h3k27ac_ko_wt_down-157	chr7	84001225	84002184	+	0	NA	intron (NM_030728, intron 2 of 28)	intron (NM_030728, intron 2 of 28)	84801	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding
h3k27me3_het_wt_up-16	chr6	128596946	128600687	+	0	NA	Intergenic	Intergenic	-17210	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding
h3k4me3_het_wt_up-32	chr14	93701175	93701962	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	187320	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k27me3_ko_wt_up-505	chrX	141470964	141471611	+	0	NA	intron (NM_053185, intron 2 of 44)	intron (NM_053185, intron 2 of 44)	2789	NM_053185	94216	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding
h3k4me3_ko_wt_up-342	chr10	125786606	125788172	+	0	NA	Intergenic	Intergenic	-178830	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding
h3k27me3_ko_wt_up-100	chr3	84743841	84745439	+	0	NA	Intergenic	Intergenic	-70937	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding
h3k27me3_ko_wt_up-249	chr11	12492915	12496369	+	0	NA	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	-29682	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
h3k27ac_het_wt_up-8	chr2	77931754	77932191	+	0	NA	intron (NM_030560, intron 4 of 20)	intron (NM_030560, intron 4 of 20)	14384	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k4me3_ko_wt_up-105	chr2	181148037	181148491	+	0	NA	intron (NM_007906, intron 7 of 7)	intron (NM_007906, intron 7 of 7)	8751	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding
h3k27me3_ko_wt_down-234	chr5	77606748	77611854	+	0	NA	Intergenic	Intergenic	143813	NR_131050	69370	Mm.426881	NR_131050		1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA
h3k4me3_ko_wt_down-131	chr11	16256820	16262056	+	0	NA	intron (NM_001290539, intron 1 of 4)	intron (NM_001290539, intron 1 of 4)	1714	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
h3k27me3_ko_wt_up-22	chr1	161441745	161443616	+	0	NA	Intergenic	Intergenic	47242	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding
h3k4me3_ko_wt_down-76	chr6	114131028	114133749	+	0	NA	intron (NM_172890, intron 1 of 13)	intron (NM_172890, intron 1 of 13)	1147	NM_172890	243616	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding
h3k27me3_het_wt_up-4	chr2	77970226	77977376	+	0	NA	Intergenic	Lx7|LINE|L1	-27445	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27me3_het_wt_down-21	chrX	94272260	94277281	+	0	NA	TTS (NR_106133)	TTS (NR_106133)	196	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA
h3k27me3_ko_wt_up-352	chr15	21783592	21785283	+	0	NA	Intergenic	Intergenic	672985	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding
h3k27me3_ko_wt_down-294	chr8	17769563	17772900	+	0	NA	Intergenic	Intergenic	-235846	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
h3k27ac_ko_wt_up-108	chr4	107958283	107958721	+	0	NA	intron (NR_131071, intron 2 of 2)	AT_rich|Low_complexity|Low_complexity	4570	NR_131071	77223	Mm.401926	NR_131071		4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA
h3k4me3_ko_wt_down-68	chr6	29215430	29216814	+	0	NA	exon (NM_001302934, exon 1 of 15)	exon (NM_001302934, exon 1 of 15)	242	NM_001302933	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding
h3k27ac_ko_wt_up-109	chr4	142956644	142957393	+	0	NA	Intergenic	Intergenic	179144	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA
h3k27me3_ko_wt_down-140	chr4	7953548	7956806	+	0	NA	Intergenic	Intergenic	283864	NM_007592	12319	Mm.119320	NM_007592		Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding
h3k4me3_ko_wt_up-3	chr1	23379085	23381029	+	0	NA	intron (NM_001081079, intron 1 of 6)	intron (NM_001081079, intron 1 of 6)	3118	NM_001081079	70155	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding
h3k4me3_ko_wt_up-9	chr1	42681223	42682032	+	0	NA	intron (NR_027826, intron 1 of 3)	intron (NR_027826, intron 1 of 3)	13198	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA
h3k27me3_ko_wt_down-581	chr18	4111564	4116912	+	0	NA	Intergenic	Intergenic	-51594	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding
h3k4me3_ko_wt_up-287	chr8	70804225	70805144	+	0	NA	Intergenic	Intergenic	-3765	NM_008353	16161	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding
h3k27ac_ko_wt_up-137	chr6	135628217	135629143	+	0	NA	Intergenic	Intergenic	-30233	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
h3k27ac_ko_wt_down-52	chr2	101598191	101598934	+	0	NA	intron (NM_026592, intron 2 of 6)	intron (NM_026592, intron 2 of 6)	-26186	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding