PeakID (cmd=annotatePeaks.pl DBR_with_p0_satb2_14155.txt mm10)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
h3k4me3_ko_wt_up-37	chr13	100892394	100893099	+	0	NA	Intergenic	Intergenic	-59319	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding
h3k27ac_ko_wt_down-85	chr6	45327933	45328389	+	0	NA	intron (NM_001004357, intron 1 of 23)	intron (NM_001004357, intron 1 of 23)	268100	NM_001004357	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k4me3_ko_wt_up-32	chr13	83662035	83663422	+	0	NA	3' UTR (NM_025282, exon 11 of 11)	3' UTR (NM_025282, exon 11 of 11)	-65378	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA
h3k27ac_ko_wt_down-169	chr14	21534057	21534525	+	0	NA	intron (NM_001205241, intron 2 of 16)	intron (NM_001205241, intron 2 of 16)	34506	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding
h3k27ac_ko_wt_down-80	chr6	27689068	27690730	+	0	NA	intron (NM_008174, intron 6 of 10)	intron (NM_008174, intron 6 of 10)	246851	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA
h3k27me3_ko_wt_up-3	chr8	68880168	68882311	+	0	NA	intron (NM_008509, intron 1 of 9)	CpG	684	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding
h3k27ac_ko_wt_down-23	chr1	194578080	194578730	+	0	NA	Intergenic	Intergenic	-41424	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding
h3k4me3_het_wt_down-2	chr13	91370584	91371590	+	0	NA	non-coding (NR_045161, exon 3 of 3)	non-coding (NR_045161, exon 3 of 3)	16998	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA
h3k4me3_ko_wt_up-11	chr4	23636132	23636682	+	0	NA	Intergenic	Intergenic	-860055	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k27ac_ko_wt_down-36	chr2	101598191	101598934	+	0	NA	intron (NM_026592, intron 2 of 6)	intron (NM_026592, intron 2 of 6)	-26186	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k27ac_ko_wt_up-9	chr6	135628217	135629143	+	0	NA	Intergenic	Intergenic	-30233	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA
h3k27me3_ko_wt_down-2	chr2	48627057	48630579	+	0	NA	Intergenic	MIRb|SINE|MIR	-185291	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding
h3k27ac_ko_wt_down-203	chr17	45063592	45064576	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-183199	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
h3k4me3_het_wt_up-3	chr4	12982136	12984384	+	0	NA	Intergenic	Intergenic	76423	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
h3k27ac_ko_wt_up-16	chr13	109822064	109824376	+	0	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-80589	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
h3k4me3_ko_wt_down-14	chr11	67596170	67599722	+	0	NA	intron (NM_001277079, intron 1 of 13)	intron (NM_001277079, intron 1 of 13)	1391	NM_001277080	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding
h3k27ac_ko_wt_down-78	chr6	18687883	18689060	+	0	NA	Intergenic	Intergenic	-160164	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-110	chr8	65288128	65289258	+	0	NA	Intergenic	Intergenic	-159156	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA
h3k27me3_ko_wt_down-13	chr12	106369425	106382649	+	0	NA	Intergenic	Intergenic	71629	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA
h3k27ac_ko_wt_down-128	chr10	96263471	96264089	+	0	NA	Intergenic	Intergenic	37573	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA
h3k27ac_ko_wt_down-112	chr8	66722000	66724336	+	0	NA	Intergenic	L1ME3B|LINE|L1	25746	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding
h3k4me3_ko_wt_up-38	chr14	62455464	62457121	+	0	NA	promoter-TSS (NM_001204340)	promoter-TSS (NM_001204340)	-3	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding
h3k27ac_ko_wt_down-186	chr14	120578083	120579367	+	0	NA	Intergenic	Intergenic	100264	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding
h3k27ac_ko_wt_down-6	chr1	31454021	31454508	+	0	NA	Intergenic	Intergenic	189417	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo
h3k27ac_ko_wt_down-94	chr7	55145887	55146874	+	0	NA	intron (NM_178705, intron 5 of 11)	intron (NM_178705, intron 5 of 11)	311135	NM_178705	233271	Mm.387344	NM_178705		Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding
h3k4me3_ko_wt_down-4	chr3	149442317	149445707	+	0	NA	Intergenic	Intergenic	169275	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA
h3k27ac_ko_wt_down-159	chr13	76877322	76878757	+	0	NA	intron (NM_030174, intron 15 of 20)	intron (NM_030174, intron 15 of 20)	257429	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding
h3k27ac_ko_wt_down-177	chr14	86684033	86685140	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	438616	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
h3k27ac_ko_wt_down-121	chr10	10085639	10086922	+	0	NA	Intergenic	Intergenic	-185240	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding
h3k27ac_ko_wt_down-62	chr5	13635908	13637230	+	0	NA	Intergenic	Intergenic	-155050	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding
h3k27ac_ko_wt_down-86	chr6	46887957	46888364	+	0	NA	intron (NM_001004357, intron 15 of 23)	intron (NM_001004357, intron 15 of 23)	-356236	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k4me3_ko_wt_up-25	chr8	35725453	35726072	+	0	NA	Intergenic	Intergenic	100797	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding
h3k27ac_ko_wt_down-109	chr8	54269408	54271468	+	0	NA	Intergenic	Intergenic	192906	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding
h3k27ac_ko_wt_down-35	chr2	101300852	101301951	+	0	NA	Intergenic	Intergenic	-323347	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k27ac_ko_wt_up-22	chr15	85490003	85490417	+	0	NA	Intergenic	Intergenic	13017	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding
h3k27ac_ko_wt_down-30	chr2	58176326	58177452	+	0	NA	non-coding (NR_045895, exon 4 of 4)	non-coding (NR_045895, exon 4 of 4)	12915	NR_045896	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA
h3k4me3_ko_wt_up-48	chr18	69499548	69502050	+	0	NA	intron (NM_001083967, intron 5 of 19)	intron (NM_001083967, intron 5 of 19)	155078	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k4me3_ko_wt_down-9	chr9	53829530	53830013	+	0	NA	Intergenic	Intergenic	-20480	NM_025540	66402	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding
h3k27ac_ko_wt_down-44	chr3	61255014	61256281	+	0	NA	Intergenic	Intergenic	-108860	NM_028712	74012	Mm.422674	NM_028712		Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding
h3k27ac_ko_wt_down-200	chr16	63906404	63907957	+	0	NA	Intergenic	Intergenic	-43023	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k4me3_ko_wt_up-42	chr16	39109632	39110212	+	0	NA	Intergenic	Intergenic	207577	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding
h3k4me3_ko_wt_up-47	chr18	54820908	54821823	+	0	NA	Intergenic	Intergenic	168815	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding
h3k27ac_ko_wt_down-113	chr8	109359484	109361165	+	0	NA	Intergenic	Intergenic	-19416	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo
h3k27ac_ko_wt_down-79	chr6	25867128	25868324	+	0	NA	Intergenic	Intergenic	-58500	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding
h3k27ac_ko_wt_up-14	chr10	69764186	69765726	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-160576	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
h3k27me3_ko_wt_down-12	chr12	39074122	39079638	+	0	NA	Intergenic	Intergenic	293169	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding
h3k4me3_ko_wt_up-50	chr18	69578992	69579902	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	233726	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27me3_ko_wt_down-10	chr8	38601483	38608939	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	56297	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding
h3k27ac_ko_wt_up-19	chr15	10264100	10265601	+	0	NA	intron (NM_001253781, intron 1 of 9)	intron (NM_001253781, intron 1 of 9)	-28801	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding
h3k27ac_ko_wt_down-57	chr4	31392378	31394325	+	0	NA	Intergenic	Intergenic	-570756	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27ac_ko_wt_down-12	chr1	77567514	77569064	+	0	NA	Intergenic	Intergenic	-53201	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding
h3k27ac_ko_wt_down-202	chr16	64166444	64167520	+	0	NA	Intergenic	Intergenic	-302825	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k27ac_ko_wt_down-196	chr16	37714517	37715943	+	0	NA	Intergenic	Intergenic	-60862	NM_026610	68194	Mm.379154	NM_026610		Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding
h3k27ac_ko_wt_down-99	chr7	89726635	89727832	+	0	NA	intron (NM_181407, intron 1 of 13)	intron (NM_181407, intron 1 of 13)	94415	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding
h3k27ac_ko_wt_down-15	chr1	103472085	103473041	+	0	NA	Intergenic	Intergenic	-1296256	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
h3k27ac_ko_wt_down-168	chr13	108524188	108525869	+	0	NA	Intergenic	Intergenic	-129149	NM_011056	238871	Mm.434429	NM_011056		Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding
h3k27ac_ko_wt_down-8	chr1	43542817	43544578	+	0	NA	intron (NM_010879, intron 3 of 4)	intron (NM_010879, intron 3 of 4)	97946	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding
h3k4me3_ko_wt_down-7	chr6	47780670	47782774	+	0	NA	Intergenic	HY3|scRNA|scRNA	21930	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA
h3k27ac_ko_wt_down-218	chr19	37975926	37976334	+	0	NA	intron (NM_001099634, intron 13 of 52)	intron (NM_001099634, intron 13 of 52)	67447	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding
h3k27ac_ko_wt_down-10	chr1	51640336	51640767	+	0	NA	Intergenic	Intergenic	-162152	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding
h3k27ac_ko_wt_down	chr1	6289619	6290658	+	0	NA	Intergenic	Intergenic	-69193	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding
h3k27me3_ko_wt_up-6	chr11	16258163	16261312	+	0	NA	intron (NM_001290539, intron 1 of 4)	intron (NM_001290539, intron 1 of 4)	2013	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
h3k27me3_ko_wt_down-6	chr3	126761770	126764915	+	0	NA	intron (NM_001293665, intron 4 of 19)	L1MA4|LINE|L1	166391	NM_001025438	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding
h3k27ac_ko_wt_up-13	chr10	69730209	69731985	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	-194435	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding
h3k27ac_ko_wt_down-49	chr3	116984833	116986369	+	0	NA	Intergenic	Intergenic	-16649	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding
h3k4me3_het_wt_up-6	chrY	90807868	90808257	+	0	NA	intron (NM_133362, intron 2 of 2)	intron (NM_133362, intron 2 of 2)	22620	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
h3k4me3_ko_wt_up-20	chr6	144180665	144181659	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	28406	NM_011444	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding
h3k27ac_ko_wt_down-74	chr5	81359656	81360244	+	0	NA	intron (NM_198702, intron 5 of 27)	intron (NM_198702, intron 5 of 27)	338357	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
h3k4me3_ko_wt_down-18	chr13	109926228	109930903	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	24756	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA
h3k27ac_ko_wt_down-32	chr2	96235499	96236000	+	0	NA	Intergenic	Intergenic	-82420	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27ac_ko_wt_up-7	chr4	22300529	22302781	+	0	NA	Intergenic	Intergenic	-55888	NM_172988	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding
h3k27ac_ko_wt_down-65	chr5	20153435	20154016	+	0	NA	intron (NM_001170745, intron 2 of 20)	intron (NM_001170745, intron 2 of 20)	246207	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
h3k27ac_ko_wt_down-151	chr13	8439254	8439746	+	0	NA	intron (NM_001289530, intron 1 of 9)	L1MA7|LINE|L1	236634	NR_110345	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding
h3k27ac_ko_wt_down-60	chr4	76379879	76380912	+	0	NA	intron (NM_011211, intron 10 of 39)	ORR1F|LTR|ERVL-MaLR	-1102109	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding
h3k27ac_ko_wt_down-129	chr10	97404203	97404809	+	0	NA	Intergenic	Intergenic	-18972	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA
h3k27ac_ko_wt_down-146	chr12	60148782	60149656	+	0	NA	Intergenic	Intergenic	-929736	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding
h3k27ac_ko_wt_down-133	chr11	10546919	10547697	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-566708	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding
h3k27ac_ko_wt_down-101	chr7	91208154	91210269	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	118425	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-108	chr8	39092346	39094016	+	0	NA	intron (NM_030254, intron 5 of 7)	intron (NM_030254, intron 5 of 7)	87314	NM_030254	80286	Mm.272722	NM_030254		Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding
h3k27me3_ko_wt_up-9	chr14	124190864	124196181	+	0	NA	promoter-TSS (NM_010201)	promoter-TSS (NM_010201)	-976	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding
h3k27ac_ko_wt_down-98	chr7	87486168	87486792	+	0	NA	intron (NM_011661, intron 1 of 4)	intron (NM_011661, intron 1 of 4)	6931	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding
h3k27ac_ko_wt_down-21	chr1	172752164	172752932	+	0	NA	Intergenic	Intergenic	54492	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding
h3k27ac_ko_wt_down-175	chr14	84223073	84223953	+	0	NA	Intergenic	Lx7|LINE|L1	-220050	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding
h3k27ac_ko_wt_down-16	chr1	104807920	104809011	+	0	NA	intron (NM_011800, intron 1 of 11)	intron (NM_011800, intron 1 of 11)	39646	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding
h3k4me3_het_wt_down	chr10	91187045	91188361	+	0	NA	Intergenic	Intergenic	-16084	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
h3k27ac_ko_wt_down-158	chr13	34312684	34313550	+	0	NA	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	32065	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding
h3k27ac_ko_wt_down-174	chr14	78204004	78204646	+	0	NA	Intergenic	Intergenic	-12847	NR_035499	100316715		NR_035499	ENSMUSG00000087932	Mir1971	mmu-mir-1971	microRNA 1971	ncRNA
h3k27ac_ko_wt_up	chr1	52669649	52670014	+	0	NA	intron (NM_133829, intron 3 of 6)	intron (NM_133829, intron 3 of 6)	39126	NR_024590	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Tmem194b	5330401P04Rik|9830163O08|Nemp2	transmembrane protein 194B	protein-coding
h3k27me3_ko_wt_up-4	chr10	68060564	68061001	+	0	NA	Intergenic	Intergenic	81184	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding
h3k27ac_ko_wt_down-3	chr1	25163155	25164238	+	0	NA	intron (NM_175642, intron 19 of 30)	intron (NM_175642, intron 19 of 30)	114258	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding
h3k27me3_ko_wt_down-5	chr2	83622356	83624403	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-21199	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding
h3k27ac_ko_wt_down-48	chr3	101162564	101163717	+	0	NA	Intergenic	Intergenic	-52974	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding
h3k27ac_ko_wt_down-132	chr10	101680713	101682746	+	0	NA	5' UTR (NM_001205098, exon 1 of 8)	5' UTR (NM_001205098, exon 1 of 8)	242	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding
h3k4me3_ko_wt_down-19	chr14	105332985	105334078	+	0	NA	Intergenic	Intergenic	74858	NM_029561	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding
h3k4me3_het_wt_up-4	chr4	62582982	62584200	+	0	NA	intron (NM_019492, intron 3 of 19)	CpG	23744	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
h3k27ac_ko_wt_down-211	chr18	28718706	28720409	+	0	NA	intron (NR_045398, intron 2 of 4)	intron (NR_045398, intron 2 of 4)	159393	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA
h3k27ac_ko_wt_down-82	chr6	42182153	42183352	+	0	NA	Intergenic	Intergenic	-32576	NM_001001453	387515	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding
h3k27me3_ko_wt_down	chr1	70437547	70450680	+	0	NA	intron (NM_029160, intron 14 of 16)	MIRb|SINE|MIR	-281602	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding
h3k27ac_ko_wt_down-66	chr5	21571840	21574832	+	0	NA	intron (NM_028977, intron 3 of 3)	intron (NM_028977, intron 3 of 3)	29809	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding
h3k27ac_ko_wt_down-161	chr13	82130090	82130825	+	0	NA	Intergenic	Intergenic	347165	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding
h3k27ac_ko_wt_down-130	chr10	98624797	98625568	+	0	NA	Intergenic	Intergenic	-273315	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA
h3k4me3_ko_wt_up-46	chr18	54125641	54126359	+	0	NA	Intergenic	Intergenic	263887	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding
h3k27ac_ko_wt_down-138	chr11	101726747	101727153	+	0	NA	Intergenic	Intergenic	-6006	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding
h3k4me3_ko_wt_up-4	chr1	155413775	155417667	+	0	NA	intron (NM_011273, intron 1 of 14)	intron (NM_011273, intron 1 of 14)	1723	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding
h3k27ac_ko_wt_down-195	chr16	37562956	37563418	+	0	NA	intron (NM_001042499, intron 4 of 7)	intron (NM_001042499, intron 4 of 7)	-16966	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding
h3k4me3_ko_wt_up-21	chr7	29070822	29072549	+	0	NA	intron (NM_009109, intron 48 of 105)	CpG	12009	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA
h3k27me3_ko_wt_down-3	chr2	56454452	56456899	+	0	NA	Intergenic	Intergenic	-330136	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA
h3k27ac_ko_wt_down-209	chr18	21757332	21759288	+	0	NA	Intergenic	Intergenic	-105942	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding
h3k27ac_ko_wt_down-194	chr16	12799802	12800991	+	0	NA	Intergenic	Intergenic	-10994	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA
h3k27ac_ko_wt_down-81	chr6	36775647	36778027	+	0	NA	intron (NM_008973, intron 1 of 4)	intron (NM_008973, intron 1 of 4)	34524	NM_008973	19242	Mm.279690	NM_008973		Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding
h3k27ac_ko_wt_down-102	chr7	91216171	91218442	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	126520	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-34	chr13	84054481	84067265	+	0	NA	intron (NR_131220, intron 1 of 1)	intron (NR_131220, intron 1 of 1)	3901	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
h3k27ac_ko_wt_down-22	chr1	177055052	177057085	+	0	NA	intron (NM_011785, intron 9 of 12)	intron (NM_011785, intron 9 of 12)	192699	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding
h3k4me3_ko_wt_down-17	chr13	29854407	29855928	+	0	NA	intron (NR_131896, intron 1 of 16)	intron (NR_131896, intron 1 of 16)	506	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding
h3k27ac_ko_wt_up-8	chr6	5408514	5409689	+	0	NA	intron (NM_023048, intron 3 of 5)	intron (NM_023048, intron 3 of 5)	25715	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding
h3k27ac_ko_wt_down-152	chr13	9065880	9066380	+	0	NA	Intergenic	Intergenic	-27751	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding
h3k27ac_ko_wt_down-150	chr12	93165977	93166787	+	0	NA	Intergenic	Intergenic	278441	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA
h3k27ac_ko_wt_up-2	chr1	56403845	56404863	+	0	NA	Intergenic	Intergenic	233097	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding
h3k27ac_ko_wt_down-213	chr18	87687442	87688129	+	0	NA	Intergenic	Intergenic	975720	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding
h3k27ac_ko_wt_down-100	chr7	91044444	91046571	+	0	NA	Intergenic	MER58B|DNA|hAT-Charlie	-45279	NM_011807	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k4me3_ko_wt_up-39	chr14	62561912	62562682	+	0	NA	intron (NM_001243857, intron 1 of 3)	intron (NM_001243857, intron 1 of 3)	6560	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding
h3k27ac_ko_wt_down-163	chr13	82942537	82943857	+	0	NA	Intergenic	Intergenic	-244864	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
h3k27ac_ko_wt_up-12	chr10	43625256	43626083	+	0	NA	intron (NR_033558, intron 2 of 2)	intron (NR_033558, intron 2 of 2)	32242	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
h3k27ac_ko_wt_down-147	chr12	63219988	63220762	+	0	NA	Intergenic	Intergenic	532588	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA
h3k27ac_ko_wt_down-185	chr14	114773895	114775315	+	0	NA	Intergenic	B1F|SINE|Alu	-57360	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA
h3k4me3_ko_wt_up-44	chr17	17402366	17405471	+	0	NA	intron (NM_025681, intron 1 of 5)	intron (NM_025681, intron 1 of 5)	1232	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb expression 1 homolog (chicken)	protein-coding
h3k27ac_ko_wt_down-13	chr1	94136688	94137685	+	0	NA	Intergenic	Intergenic	-84633	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding
h3k27ac_ko_wt_down-97	chr7	77910385	77910797	+	0	NA	Intergenic	L1MC5|LINE|L1	667247	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding
h3k27ac_ko_wt_down-31	chr2	58240198	58241766	+	0	NA	Intergenic	MLT1G3-int|LTR|ERVL-MaLR	-35797	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA
h3k27ac_ko_wt_up-17	chr13	110652120	110652630	+	0	NA	Intergenic	Intergenic	-251124	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA
h3k4me3_ko_wt_up-49	chr18	69575411	69578290	+	0	NA	intron (NM_001083967, intron 8 of 19)	intron (NM_001083967, intron 8 of 19)	231129	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding
h3k27ac_ko_wt_down-184	chr14	112028920	112030314	+	0	NA	intron (NR_030150, intron 2 of 3)	intron (NR_030150, intron 2 of 3)	8187	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA
h3k27ac_ko_wt_down-2	chr1	9207014	9208365	+	0	NA	intron (NM_001290390, intron 1 of 20)	intron (NM_001290390, intron 1 of 20)	92188	NM_027671	71096	Mm.336395	NM_027671		Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding
h3k4me3_ko_wt_down-5	chr3	154816872	154817875	+	0	NA	intron (NM_177066, intron 23 of 24)	intron (NM_177066, intron 23 of 24)	106240	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding
h3k27ac_ko_wt_down-119	chr9	90771986	90772806	+	0	NA	Intergenic	Intergenic	-501627	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding
h3k4me3_ko_wt_up-15	chr5	66336478	66338292	+	0	NA	intron (NM_001310626, intron 10 of 15)	intron (NM_001310626, intron 10 of 15)	280	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding
h3k27ac_ko_wt_down-162	chr13	82372390	82373448	+	0	NA	Intergenic	Intergenic	325414	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA
h3k27ac_ko_wt_down-212	chr18	31179883	31180809	+	0	NA	intron (NM_009065, intron 3 of 4)	MamTip2|DNA|hAT-Tip100	136782	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding
h3k4me3_ko_wt_up-3	chr1	55888715	55891372	+	0	NA	Intergenic	Intergenic	-41198	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
h3k4me3_ko_wt_up-36	chr13	84750079	84752406	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-438235	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding
h3k27ac_ko_wt_down-47	chr3	70543869	70544637	+	0	NA	Intergenic	Intergenic	263038	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA
h3k27ac_ko_wt_down-54	chr4	30840855	30841809	+	0	NA	intron (NR_040655, intron 6 of 6)	intron (NR_040655, intron 6 of 6)	176736	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA
h3k27ac_ko_wt_down-210	chr18	22248419	22249208	+	0	NA	Intergenic	Intergenic	-77417	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding
h3k27ac_ko_wt_down-153	chr13	12308187	12308883	+	0	NA	intron (NM_033268, intron 4 of 20)	intron (NM_033268, intron 4 of 20)	32197	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding
h3k27ac_ko_wt_down-160	chr13	77528399	77531259	+	0	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	-178861	NM_001163419	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding
h3k27ac_ko_wt_up-24	chr19	28086959	28089134	+	0	NA	Intergenic	Intergenic	-76880	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding
h3k27ac_ko_wt_down-131	chr10	98933068	98933646	+	0	NA	intron (NM_026482, intron 1 of 20)	Kanga11a|DNA|TcMar-Tc2	18205	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding
h3k27ac_ko_wt_up-18	chr15	9070468	9071243	+	0	NA	promoter-TSS (NM_001085410)	promoter-TSS (NM_001085410)	-405	NM_001085410	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding
h3k27ac_ko_wt_down-63	chr5	14661606	14663091	+	0	NA	intron (NM_001110796, intron 3 of 19)	Lx8b|LINE|L1	147430	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding
h3k27ac_ko_wt_down-103	chr7	91785097	91786514	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-276589	NM_001243046	23859	Mm.147213	NM_011807		Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93	discs, large homolog 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-197	chr16	45659370	45660132	+	0	NA	intron (NM_172455, intron 16 of 17)	intron (NM_172455, intron 16 of 17)	-5633	NM_145389	212998	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding
h3k4me3_ko_wt_up-43	chr16	92399245	92400595	+	0	NA	exon (NM_019466, exon 1 of 4)	exon (NM_019466, exon 1 of 4)	158	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding
h3k27ac_ko_wt_down-139	chr12	12708636	12709612	+	0	NA	Intergenic	Intergenic	232712	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)	protein-coding
h3k27ac_ko_wt_down-123	chr10	24999893	25000594	+	0	NA	Intergenic	Intergenic	-72773	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding
h3k27ac_ko_wt_down-26	chr2	43782719	43786685	+	0	NA	intron (NM_001301832, intron 2 of 14)	intron (NM_001301832, intron 2 of 14)	35878	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
h3k27me3_ko_wt_up	chr6	101352493	101354017	+	0	NA	intron (NM_018884, intron 3 of 9)	intron (NM_018884, intron 3 of 9)	24642	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding
h3k27ac_ko_wt_down-208	chr18	15621489	15622006	+	0	NA	intron (NM_199055, intron 1 of 3)	intron (NM_199055, intron 1 of 3)	96299	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding
h3k27ac_ko_wt_down-11	chr1	71682090	71682658	+	0	NA	Intergenic	Intergenic	29039	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA
h3k27ac_ko_wt_down-33	chr2	98901470	98902610	+	0	NA	Intergenic	Intergenic	1434383	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k4me3_het_wt_up	chr2	77897402	77898033	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48639	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-77	chr6	14141097	14142849	+	0	NA	Intergenic	Intergenic	270404	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA
h3k27ac_ko_wt_down-111	chr8	65587682	65589311	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-29544	NM_001166372	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding
h3k27ac_ko_wt_down-61	chr5	8289663	8290811	+	0	NA	intron (NM_001310440, intron 3 of 30)	intron (NM_001310440, intron 3 of 30)	77923	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding
h3k4me3_ko_wt_up-10	chr3	148976682	148978688	+	0	NA	Intergenic	Intergenic	-23050	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding
h3k27ac_ko_wt_down-176	chr14	85507454	85507800	+	0	NA	Intergenic	Intergenic	-738343	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA
h3k27ac_ko_wt_up-23	chr17	69736356	69736838	+	0	NA	Intergenic	Intergenic	297271	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	A330050F15Rik	-	RIKEN cDNA A330050F15 gene	protein-coding
h3k27ac_ko_wt_down-59	chr4	31818908	31820256	+	0	NA	Intergenic	Intergenic	-144525	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27ac_ko_wt_down-145	chr12	58425130	58427324	+	0	NA	Intergenic	Intergenic	-156969	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding
h3k27ac_ko_wt_down-187	chr15	8990812	8992234	+	0	NA	intron (NM_198024, intron 1 of 13)	intron (NM_198024, intron 1 of 13)	23574	NM_198024	223332	Mm.321371	NM_198024		Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding
h3k4me3_het_wt_up-2	chr4	12982136	12984384	+	0	NA	Intergenic	Intergenic	76423	NM_173746	208820	Mm.12057	NM_173746		Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding
h3k27ac_ko_wt_down-83	chr6	43774746	43775749	+	0	NA	Intergenic	Intergenic	-108969	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
h3k27me3_ko_wt_up-10	chr18	65872586	65875540	+	0	NA	intron (NM_175012, intron 1 of 2)	intron (NM_175012, intron 1 of 2)	577	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding
h3k27me3_ko_wt_up-8	chr12	45010129	45012982	+	0	NA	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	62928	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding
h3k27ac_ko_wt_down-120	chr10	4923959	4925901	+	0	NA	intron (NM_001302533, intron 5 of 7)	(TCTCTG)n|Simple_repeat|Simple_repeat	144133	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756	spectrin repeat containing, nuclear envelope 1	protein-coding
h3k27ac_ko_wt_down-118	chr9	79608232	79608653	+	0	NA	exon (NM_001290308, exon 60 of 66)	exon (NM_001290308, exon 60 of 66)	-89140	NR_045336	100038575	Mm.367838	NR_045336		Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA
h3k27ac_ko_wt_down-144	chr12	51240887	51242990	+	0	NA	Intergenic	Intergenic	-106292	NM_001167963	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding
h3k27ac_ko_wt_down-20	chr1	171715556	171716104	+	0	NA	Intergenic	RLTR22_Mus|LTR|ERVK	33775	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding
h3k27ac_ko_wt_down-122	chr10	15549569	15550667	+	0	NA	Intergenic	Intergenic	-241659	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA
h3k27ac_ko_wt_down-25	chr2	33085786	33086780	+	0	NA	intron (NM_178888, intron 1 of 28)	intron (NM_178888, intron 1 of 28)	921	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding
h3k4me3_ko_wt_up-51	chrY	90807868	90808257	+	0	NA	intron (NM_133362, intron 2 of 2)	intron (NM_133362, intron 2 of 2)	22620	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding
h3k27ac_ko_wt_up-5	chr2	116201337	116202190	+	0	NA	Intergenic	Intergenic	-125667	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA
h3k27ac_ko_wt_down-201	chr16	64163476	64164215	+	0	NA	Intergenic	Intergenic	-299688	NM_010140	13837	Mm.1977	NM_010140		Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding
h3k4me3_ko_wt_up-33	chr13	83986778	83988262	+	0	NA	Intergenic	Intergenic	77254	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
h3k27me3_ko_wt_down-11	chr11	39727619	39738987	+	0	NA	Intergenic	Intergenic	-343078	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA
h3k27me3_ko_wt_up-2	chr6	148622414	148622997	+	0	NA	Intergenic	Intergenic	-8396	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA
h3k27ac_ko_wt_up-6	chr4	15385049	15386189	+	0	NA	Intergenic	Intergenic	119799	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding
h3k27ac_ko_wt_down-58	chr4	31419481	31420094	+	0	NA	Intergenic	Intergenic	-544320	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27me3_ko_wt_up-7	chr11	111064577	111065548	+	0	NA	Intergenic	Intergenic	-1102	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27ac_ko_wt_down-137	chr11	40784006	40785091	+	0	NA	Intergenic	Intergenic	-29262	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding
h3k4me3_ko_wt_up-16	chr6	22205413	22206595	+	0	NA	intron (NM_001081351, intron 15 of 21)	intron (NM_001081351, intron 15 of 21)	-82223	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding
h3k27me3_ko_wt_down-15	chr18	87905916	87912073	+	0	NA	Intergenic	RMER12B|LTR|ERVK	985213	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding
h3k27ac_ko_wt_down-14	chr1	100843456	100844022	+	0	NA	Intergenic	Lx|LINE|L1	-312029	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA
h3k27ac_ko_wt_down-204	chr17	52347756	52349461	+	0	NA	Intergenic	Intergenic	-254101	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding
h3k27ac_ko_wt_down-199	chr16	54245825	54247083	+	0	NA	Intergenic	Intergenic	1036783	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding
h3k27ac_ko_wt_down-88	chr6	61119489	61120483	+	0	NA	Intergenic	Intergenic	-60339	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding
h3k27ac_ko_wt_down-42	chr3	31306715	31307396	+	0	NA	intron (NM_172861, intron 1 of 7)	intron (NM_172861, intron 1 of 7)	3264	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding
h3k4me3_ko_wt_down-6	chr6	25183310	25184340	+	0	NA	Intergenic	Intergenic	-227700	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding
h3k27me3_ko_wt_down-14	chr16	57823729	57831082	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-72668	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding
h3k27ac_ko_wt_down-205	chr17	63209664	63211008	+	0	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	102637	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA
h3k27ac_ko_wt_down-39	chr3	17582108	17583780	+	0	NA	Intergenic	Intergenic	-206977	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	2610100L16Rik	100040120|Gm2612	RIKEN cDNA 2610100L16 gene	ncRNA
h3k27ac_ko_wt_down-75	chr5	81969649	81971445	+	0	NA	Intergenic	Intergenic	828518	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA
h3k27ac_ko_wt_down-70	chr5	62498947	62500385	+	0	NA	Intergenic	Intergenic	266511	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
h3k27ac_ko_wt_down-53	chr4	17635276	17636548	+	0	NA	Intergenic	Intergenic	-217570	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding
h3k27ac_het_wt_down-2	chr17	45063592	45064576	+	0	NA	intron (NM_178652, intron 11 of 11)	intron (NM_178652, intron 11 of 11)	-183199	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding
h3k27ac_ko_wt_down-92	chr7	53608439	53609306	+	0	NA	Intergenic	Intergenic	283017	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
h3k4me3_ko_wt_up-35	chr13	84054481	84067265	+	0	NA	intron (NR_131220, intron 1 of 1)	intron (NR_131220, intron 1 of 1)	3901	NR_131220	553095	Mm.39702	NR_131220		Gm17750	-	predicted gene, 17750	ncRNA
h3k27ac_ko_wt_down-156	chr13	25899475	25900625	+	0	NA	Intergenic	Intergenic	66266	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA
h3k27ac_ko_wt_down-141	chr12	35401284	35402214	+	0	NA	Intergenic	Intergenic	133240	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding
h3k4me3_ko_wt_up-9	chr3	86844842	86845629	+	0	NA	intron (NM_001195496, intron 2 of 16)	intron (NM_001195496, intron 2 of 16)	75649	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding
h3k27ac_ko_wt_down-106	chr8	7461948	7463825	+	0	NA	Intergenic	Intergenic	1197887	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k27ac_ko_wt_up-11	chr8	16057553	16058514	+	0	NA	intron (NM_053171, intron 37 of 69)	intron (NM_053171, intron 37 of 69)	110805	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA
h3k27ac_ko_wt_down-64	chr5	19545858	19546893	+	0	NA	intron (NM_001170746, intron 1 of 22)	intron (NM_001170746, intron 1 of 22)	319329	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding
h3k27ac_ko_wt_down-9	chr1	51332901	51334890	+	0	NA	promoter-TSS (NR_045151)	promoter-TSS (NR_045151)	-116	NR_045151	442821	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA
h3k27ac_ko_wt_down-114	chr9	9476809	9478274	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-238528	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding
h3k27ac_ko_wt_down-148	chr12	64858041	64858650	+	0	NA	Intergenic	Intergenic	-59566	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding
h3k4me3_ko_wt_up-14	chr4	124575067	124575790	+	0	NA	non-coding (NR_045819, exon 3 of 3)	non-coding (NR_045819, exon 3 of 3)	6249	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA
h3k4me3_ko_wt_up-28	chr10	87351160	87352281	+	0	NA	Intergenic	Intergenic	141940	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute complex homolog 1 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-89	chr6	76696263	76698147	+	0	NA	Intergenic	Intergenic	-545512	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding
h3k27ac_ko_wt_down-189	chr15	20222051	20224383	+	0	NA	Intergenic	Intergenic	443533	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding
h3k27me3_ko_wt_down-4	chr2	57614534	57617739	+	0	NA	Intergenic	Intergenic	377754	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding
h3k27ac_ko_wt_down-115	chr9	40364466	40364751	+	0	NA	intron (NM_172768, intron 2 of 19)	intron (NM_172768, intron 2 of 19)	31136	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA
h3k4me3_ko_wt_up-19	chr6	136554994	136555802	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	36547	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
h3k27ac_ko_wt_down-38	chr2	149666261	149667069	+	0	NA	Intergenic	Intergenic	-164118	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding
h3k4me3_ko_wt_up-45	chr18	49117375	49118313	+	0	NA	Intergenic	Intergenic	-405445	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA
h3k27ac_ko_wt_down-27	chr2	43862525	43863138	+	0	NA	intron (NM_001301832, intron 6 of 14)	intron (NM_001301832, intron 6 of 14)	114007	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding
h3k4me3_ko_wt_down-12	chr10	91187045	91188361	+	0	NA	Intergenic	Intergenic	-16084	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding
h3k27ac_ko_wt_down-4	chr1	30590320	30591432	+	0	NA	Intergenic	Intergenic	272380	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
h3k27ac_ko_wt_down-76	chr5	85636347	85638114	+	0	NA	Intergenic	Intergenic	428353	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding
h3k4me3_ko_wt_up-22	chr7	51748763	51749769	+	0	NA	Intergenic	Intergenic	113001	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding
h3k27ac_ko_wt_down-216	chr19	20917866	20918831	+	0	NA	intron (NM_028953, intron 2 of 20)	intron (NM_028953, intron 2 of 20)	35854	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding
h3k4me3_ko_wt_up-27	chr9	83316754	83317953	+	0	NA	Intergenic	Intergenic	-114194	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA
h3k27ac_ko_wt_down-166	chr13	91128479	91129592	+	0	NA	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	94952	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding
h3k27ac_ko_wt_up-20	chr15	55162094	55163823	+	0	NA	intron (NM_145470, intron 3 of 8)	intron (NM_145470, intron 3 of 8)	29522	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding
h3k27ac_ko_wt_down-135	chr11	15386114	15386858	+	0	NA	Intergenic	Intergenic	787246	NM_001164166	432536	Mm.33646	NM_001164166		Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding
h3k27ac_ko_wt_down-96	chr7	69276037	69277785	+	0	NA	Intergenic	Intergenic	-219183	NR_045940	73796	Mm.410832	NR_045940		4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA
h3k4me3_ko_wt_up-13	chr4	103324859	103326067	+	0	NA	intron (NM_025909, intron 5 of 8)	intron (NM_025909, intron 5 of 8)	11617	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 homolog, zinc metallopeptidase (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-198	chr16	50059325	50060524	+	0	NA	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	12928	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA
h3k4me3_ko_wt_up-7	chr3	16816964	16820489	+	0	NA	Intergenic	Intergenic	635543	NM_172677	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding
h3k27ac_ko_wt_down-84	chr6	44286473	44287050	+	0	NA	Intergenic	Intergenic	-620483	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding
h3k27ac_ko_wt_down-18	chr1	131491568	131492905	+	0	NA	intron (NM_001081011, intron 2 of 22)	intron (NM_001081011, intron 2 of 22)	35125	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding
h3k27ac_ko_wt_down-134	chr11	12741571	12742682	+	0	NA	Intergenic	Intergenic	-277166	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding
h3k27me3_ko_wt_down-9	chr7	37598889	37601925	+	0	NA	intron (NM_172385, intron 3 of 5)	intron (NM_172385, intron 3 of 5)	169345	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding
h3k27ac_ko_wt_down-207	chr17	94053654	94054755	+	0	NA	Intergenic	Intergenic	695688	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding
h3k4me3_ko_wt_down-15	chr11	111064806	111069991	+	0	NA	intron (NM_008425, intron 1 of 1)	intron (NM_008425, intron 1 of 1)	1234	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding
h3k27ac_ko_wt_down-46	chr3	68759197	68760074	+	0	NA	Intergenic	Intergenic	68211	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding
h3k27ac_ko_wt_down-7	chr1	32092812	32093454	+	0	NA	Intergenic	Intergenic	-79673	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
h3k4me3_ko_wt_down-10	chr9	77249890	77252707	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	96572	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
h3k27ac_ko_wt_down-172	chr14	39043196	39045149	+	0	NA	intron (NM_008734, intron 1 of 9)	intron (NM_008734, intron 1 of 9)	145870	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
h3k4me3_ko_wt_down-8	chr9	41889918	41892501	+	0	NA	Intergenic	Intergenic	233080	NM_011436	20660	Mm.121920	NM_011436		Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding
h3k4me3_ko_wt_down	chr1	32172244	32177044	+	0	NA	intron (NM_133235, intron 1 of 8)	intron (NM_133235, intron 1 of 8)	1838	NM_133235	170771	Mm.336594	NM_133235		Khdrbs2	6330586C16Rik|Slim1|Slm1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding
h3k4me3_ko_wt_up-40	chr14	100458909	100459995	+	0	NA	Intergenic	Intergenic	-309656	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27ac_ko_wt_down-170	chr14	37716096	37717020	+	0	NA	Intergenic	Intergenic	-581236	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding
h3k27ac_ko_wt_down-68	chr5	45111344	45112156	+	0	NA	intron (NR_131933, intron 5 of 5)	intron (NR_131933, intron 5 of 5)	145549	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA
h3k27ac_ko_wt_down-181	chr14	102705427	102708057	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	275890	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA
h3k27ac_ko_wt_down-188	chr15	18927995	18929216	+	0	NA	intron (NM_009865, intron 2 of 11)	intron (NM_009865, intron 2 of 11)	108276	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding
h3k27ac_ko_wt_down-90	chr6	137712495	137713705	+	0	NA	Intergenic	Intergenic	-21982	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding
h3k27ac_ko_wt_down-149	chr12	73715954	73716722	+	0	NA	intron (NM_001313977, intron 10 of 14)	intron (NM_001313977, intron 10 of 14)	131542	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding
h3k27ac_ko_wt_down-126	chr10	43630781	43632708	+	0	NA	TTS (NR_033558)	TTS (NR_033558)	38317	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA
h3k27ac_ko_wt_down-19	chr1	162083699	162085082	+	0	NA	intron (NM_172646, intron 15 of 19)	intron (NM_172646, intron 15 of 19)	79421	NR_040562	72753	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA
h3k27ac_ko_wt_down-95	chr7	56459530	56460949	+	0	NA	intron (NM_021879, intron 23 of 23)	intron (NM_021879, intron 23 of 23)	220468	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p	oculocutaneous albinism II	protein-coding
h3k27ac_ko_wt_down-117	chr9	77264721	77266254	+	0	NA	intron (NM_027150, intron 1 of 7)	intron (NM_027150, intron 1 of 7)	82383	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding
h3k27me3_ko_wt_down-8	chr4	62583023	62586967	+	0	NA	intron (NM_019492, intron 3 of 19)	intron (NM_019492, intron 3 of 19)	25148	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding
h3k27ac_ko_wt_down-72	chr5	62813408	62814738	+	0	NA	exon (NM_001170705, exon 1 of 9)	exon (NM_001170705, exon 1 of 9)	250	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding
h3k27ac_ko_wt_down-34	chr2	101295121	101297582	+	0	NA	Intergenic	Intergenic	-328397	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding
h3k4me3_ko_wt_up-30	chr12	50190846	50193399	+	0	NA	Intergenic	Intergenic	457101	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding
h3k27ac_ko_wt_down-40	chr3	18640681	18641356	+	0	NA	Intergenic	Intergenic	-160541	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA
h3k27ac_ko_wt_down-51	chr4	12243218	12243751	+	0	NA	Intergenic	Intergenic	-71469	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding
h3k27ac_ko_wt_down-45	chr3	65612339	65613158	+	0	NA	Intergenic	Intergenic	-46540	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA
h3k4me3_ko_wt_down-16	chr13	24686949	24687514	+	0	NA	intron (NM_001286100, intron 8 of 22)	intron (NM_001286100, intron 8 of 22)	48583	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding
h3k27ac_het_wt_down	chr4	85261104	85262068	+	0	NA	intron (NM_019535, intron 1 of 8)	intron (NM_019535, intron 1 of 8)	56130	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding
h3k27ac_ko_wt_down-173	chr14	60501937	60503138	+	0	NA	Intergenic	Intergenic	124251	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding
h3k4me3_ko_wt_down-3	chr2	97466239	97475133	+	0	NA	intron (NM_001289744, intron 1 of 1)	intron (NM_001289744, intron 1 of 1)	3029	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding
h3k27ac_ko_wt_down-69	chr5	57119533	57120175	+	0	NA	Intergenic	Intergenic	598065	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA
h3k27ac_ko_wt_down-191	chr15	24566500	24567757	+	0	NA	Intergenic	Intergenic	846636	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding
h3k4me3_ko_wt_up	chr1	41889957	41891972	+	0	NA	Intergenic	Intergenic	-709712	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA
h3k27ac_ko_wt_down-52	chr4	13586245	13587088	+	0	NA	Intergenic	Intergenic	-156636	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding
h3k27ac_ko_wt_down-93	chr7	54150721	54151236	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-259089	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA
h3k27ac_ko_wt_down-17	chr1	121091324	121092187	+	0	NA	intron (NR_110450, intron 1 of 2)	B4A|SINE|B4	4350	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA
h3k27ac_ko_wt_down-165	chr13	83374521	83375119	+	0	NA	Intergenic	Intergenic	-129214	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
h3k4me3_ko_wt_up-8	chr3	67891934	67894489	+	0	NA	intron (NM_001113419, intron 1 of 10)	intron (NM_001113419, intron 1 of 10)	991	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding
h3k27ac_ko_wt_down-215	chr19	12372590	12373426	+	0	NA	intron (NR_030566, intron 3 of 3)	intron (NR_030566, intron 3 of 3)	-21257	NM_146684	258679	Mm.271520	NM_146684	ENSMUSG00000046650	Olfr1440	MOR215-1	olfactory receptor 1440	protein-coding
h3k4me3_ko_wt_up-2	chr1	55888715	55891372	+	0	NA	Intergenic	Intergenic	-41198	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA
h3k4me3_ko_wt_up-26	chr9	37625278	37626185	+	0	NA	intron (NM_011734, intron 3 of 9)	intron (NM_011734, intron 3 of 9)	11884	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding
h3k27ac_ko_wt_down-164	chr13	83110779	83111707	+	0	NA	Intergenic	Intergenic	-392791	NM_025282	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding
h3k4me3_ko_wt_up-41	chr16	25058609	25059873	+	0	NA	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-398	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA
h3k27ac_ko_wt_down-214	chr19	12145704	12146217	+	0	NA	intron (NR_030566, intron 2 of 3)	intron (NR_030566, intron 2 of 3)	-25286	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding
h3k27ac_ko_wt_up-4	chr2	108307292	108308597	+	0	NA	Intergenic	Intergenic	970346	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding
h3k27ac_ko_wt_down-182	chr14	106844640	106845955	+	0	NA	Intergenic	Intergenic	-358777	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
h3k27ac_ko_wt_down-43	chr3	45403053	45403665	+	0	NA	intron (NM_001098170, intron 4 of 4)	intron (NM_001098170, intron 4 of 4)	24961	NM_001098170	18526	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding
h3k27ac_ko_wt_down-116	chr9	42544293	42544919	+	0	NA	intron (NM_175481, intron 16 of 20)	intron (NM_175481, intron 16 of 20)	-72380	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding
h3k27ac_ko_wt_up-21	chr15	71541982	71542950	+	0	NA	intron (NM_177819, intron 3 of 19)	intron (NM_177819, intron 3 of 19)	185372	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding
h3k27ac_ko_wt_down-127	chr10	55112344	55113678	+	0	NA	Intergenic	Intergenic	-993906	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding
h3k27ac_ko_wt_down-171	chr14	38122212	38123324	+	0	NA	Intergenic	Intergenic	-775534	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA
h3k27ac_ko_wt_down-67	chr5	40394675	40395597	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-750505	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding
h3k27ac_ko_wt_down-71	chr5	62705332	62707374	+	0	NA	intron (NM_178407, intron 8 of 32)	intron (NM_178407, intron 8 of 32)	59824	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding
h3k27ac_ko_wt_down-180	chr14	99733459	99735556	+	0	NA	Intergenic	Intergenic	415289	NM_010636	16597	Mm.396499	NM_010636		Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding
h3k27ac_ko_wt_down-193	chr15	80536132	80536470	+	0	NA	intron (NM_001163189, intron 1 of 5)	intron (NM_001163189, intron 1 of 5)	24169	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding
h3k27ac_ko_wt_down-105	chr8	7131296	7132569	+	0	NA	Intergenic	Intergenic	1528841	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k4me3_ko_wt_up-29	chr11	117415095	117416177	+	0	NA	TTS (NR_132097)	TTS (NR_132097)	1247	NR_132097	105827746	Mm.388009	NR_132097		Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA
h3k27ac_ko_wt_down-178	chr14	86748550	86751571	+	0	NA	intron (NM_019670, intron 27 of 27)	intron (NM_019670, intron 27 of 27)	391054	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding
h3k27ac_ko_wt_up-3	chr2	107149228	107150871	+	0	NA	Intergenic	L2b|LINE|L2	-90398	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding
h3k27ac_ko_wt_down-155	chr13	19668564	19668769	+	0	NA	intron (NM_001167909, intron 11 of 14)	intron (NM_001167909, intron 11 of 14)	29094	NM_001167909	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding
h3k27ac_ko_wt_down-104	chr7	100816973	100818827	+	0	NA	intron (NM_178764, intron 4 of 8)	intron (NM_178764, intron 4 of 8)	45513	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding
h3k27ac_ko_wt_down-24	chr1	194884984	194885557	+	0	NA	Intergenic	MIRb|SINE|MIR	-53551	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding
h3k4me3_ko_wt_up-18	chr6	136551109	136552044	+	0	NA	intron (NM_019426, intron 1 of 14)	intron (NM_019426, intron 1 of 14)	32725	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding
h3k27me3_ko_wt_down-7	chr3	145739478	145744562	+	0	NA	Intergenic	Intergenic	-16672	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding
h3k4me3_ko_wt_up-24	chr8	8649954	8651589	+	0	NA	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	10002	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding
h3k27ac_ko_wt_down-154	chr13	16283373	16283965	+	0	NA	Intergenic	Intergenic	269194	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding
h3k27ac_ko_wt_down-206	chr17	93489812	93490333	+	0	NA	Intergenic	Intergenic	290904	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding
h3k27ac_ko_wt_down-192	chr15	52764297	52765378	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	52392	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding
h3k4me3_ko_wt_up-12	chr4	23829372	23831154	+	0	NA	Intergenic	Intergenic	-666199	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding
h3k4me3_ko_wt_up-17	chr6	116054085	116057357	+	0	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-60716	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding
h3k4me3_ko_wt_down-13	chr11	16256820	16262056	+	0	NA	intron (NM_001290539, intron 1 of 4)	intron (NM_001290539, intron 1 of 4)	1714	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding
h3k4me3_ko_wt_down-2	chr1	56948572	56954305	+	0	NA	intron (NM_139146, intron 2 of 10)	intron (NM_139146, intron 2 of 10)	19896	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding
h3k27ac_ko_wt_down-5	chr1	30700185	30701830	+	0	NA	Intergenic	Intergenic	162249	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding
h3k4me3_ko_wt_up-31	chr13	46571064	46572196	+	0	NA	intron (NM_026056, intron 4 of 12)	intron (NM_026056, intron 4 of 12)	69727	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding
h3k27ac_ko_wt_down-190	chr15	23842704	23843458	+	0	NA	Intergenic	Intergenic	806618	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding
h3k27ac_ko_wt_down-183	chr14	107687223	107688022	+	0	NA	Intergenic	Intergenic	-1201102	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA
h3k27ac_ko_wt_up-15	chr12	33106305	33107568	+	0	NA	Intergenic	Intergenic	-14061	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding
h3k27ac_ko_wt_down-87	chr6	47050221	47051424	+	0	NA	intron (NM_001004357, intron 18 of 23)	intron (NM_001004357, intron 18 of 23)	-193574	NM_025771	66797	Mm.440084	NM_025771		Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding
h3k27ac_het_wt_up	chr2	77896839	77898775	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48549	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-167	chr13	96423247	96424021	+	0	NA	intron (NM_001042714, intron 11 of 13)	intron (NM_001042714, intron 11 of 13)	35340	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein homolog (Chlamydomonas)	protein-coding
h3k27ac_ko_wt_down-217	chr19	28452669	28454312	+	0	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-224734	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA
h3k27ac_ko_wt_down-29	chr2	55692438	55694200	+	0	NA	Intergenic	UCON25|Unknown|Unknown	257349	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding
h3k4me3_ko_wt_up-23	chr7	127363094	127364319	+	0	NA	Intergenic	CpG	12344	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding
h3k27ac_ko_wt_up-10	chr7	109328782	109330266	+	0	NA	intron (NM_054103, intron 8 of 13)	intron (NM_054103, intron 8 of 13)	109529	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding
h3k27ac_ko_wt_down-124	chr10	27133403	27134317	+	0	NA	intron (NM_008481, intron 34 of 63)	intron (NM_008481, intron 34 of 63)	-256006	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA
h3k27ac_ko_wt_down-142	chr12	41671919	41672186	+	0	NA	intron (NM_053122, intron 5 of 6)	intron (NM_053122, intron 5 of 6)	-185995	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding
h3k27ac_ko_wt_down-125	chr10	32812969	32814443	+	0	NA	intron (NM_001013411, intron 1 of 6)	intron (NM_001013411, intron 1 of 6)	76209	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding
h3k27ac_ko_wt_down-56	chr4	31369538	31370955	+	0	NA	Intergenic	Intergenic	-593861	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding
h3k27ac_ko_wt_down-140	chr12	34052144	34053892	+	0	NA	intron (NM_001271386, intron 27 of 27)	intron (NM_001271386, intron 27 of 27)	95347	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding
h3k4me3_ko_wt_down-11	chr9	83663913	83665711	+	0	NA	Intergenic	Intergenic	-26663	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA
h3k27ac_ko_wt_down-179	chr14	91658279	91659928	+	0	NA	Intergenic	Intergenic	1532212	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA
h3k27ac_ko_wt_down-107	chr8	17053432	17053988	+	0	NA	intron (NM_053171, intron 2 of 69)	intron (NM_053171, intron 2 of 69)	481675	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding
h3k4me3_ko_wt_up-5	chr1	176929589	176931941	+	0	NA	intron (NM_029756, intron 13 of 17)	intron (NM_029756, intron 13 of 17)	-94632	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo
h3k27me3_ko_wt_up-5	chr10	93699877	93702123	+	0	NA	intron (NM_021320, intron 3 of 9)	intron (NM_021320, intron 3 of 9)	-17678	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA
h3k27ac_ko_wt_down-157	chr13	28465407	28466154	+	0	NA	intron (NR_045054, intron 7 of 7)	intron (NR_045054, intron 7 of 7)	245093	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA
h3k27ac_ko_wt_down-91	chr7	49569481	49569748	+	0	NA	intron (NM_001111016, intron 23 of 38)	intron (NM_001111016, intron 23 of 38)	67221	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding
h3k4me3_ko_wt_up-6	chr2	77897402	77898033	+	0	NA	intron (NM_172667, intron 19 of 19)	intron (NM_172667, intron 19 of 19)	48639	NM_172667	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein homolog (S. cerevisiae)	protein-coding
h3k27ac_ko_wt_down-28	chr2	44570129	44572114	+	0	NA	intron (NM_172662, intron 9 of 10)	intron (NM_172662, intron 9 of 10)	290501	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding
h3k27ac_ko_wt_down-37	chr2	113222139	113222871	+	0	NA	intron (NR_035479, intron 2 of 3)	intron (NR_035479, intron 2 of 3)	2318	NR_035479	100316776		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA
h3k27ac_ko_wt_down-73	chr5	80658726	80659630	+	0	NA	Intergenic	Intergenic	-362415	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding
h3k27ac_ko_wt_down-41	chr3	25806053	25807702	+	0	NA	intron (NM_138666, intron 5 of 7)	intron (NM_138666, intron 5 of 7)	346430	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding
h3k27ac_ko_wt_down-50	chr3	151003147	151004224	+	0	NA	Intergenic	Intergenic	-434197	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding
h3k27ac_ko_wt_down-143	chr12	43641151	43641714	+	0	NA	Intergenic	L1MEf|LINE|L1	568636	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ (Hsp40) homolog, subfamily B, member 9	protein-coding
h3k27ac_ko_wt_down-136	chr11	37153394	37154383	+	0	NA	Intergenic	Intergenic	-209647	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding
h3k4me3_het_wt_up-5	chr14	93701175	93701962	+	0	NA	intron (NM_001081377, intron 1 of 3)	intron (NM_001081377, intron 1 of 3)	187320	NM_001081377	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding
h3k27ac_ko_wt_down-55	chr4	31361756	31362558	+	0	NA	Intergenic	Intergenic	-601950	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding