Information for 1-AVCAGATGGC (Motif 1)

T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
Reverse Opposite:
C T A G T G A C G T A C G C T A A C G T G T A C A C G T C T A G A C G T A G C T
p-value:1e-2195
log p-value:-5.056e+03
Information Content per bp:1.686
Number of Target Sequences with motif7400.0
Percentage of Target Sequences with motif23.01%
Number of Background Sequences with motif1818.3
Percentage of Background Sequences with motif5.95%
Average Position of motif in Targets99.6 +/- 50.5bp
Average Position of motif in Background101.6 +/- 65.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROD1/MA1109.1/Jaspar

Match Rank:1
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-AVCAGATGGC--
GGACAGATGGCAG
 A C G T T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C A C G T A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:AVCAGATGGC
AACAGATGGC
 T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

NEUROG2(var.2)/MA1642.1/Jaspar

Match Rank:3
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--AVCAGATGGC-
GGAACAGATGGCA
 A C G T A C G T T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C A C G T
C T A G C T A G T C G A T G C A T A G C T C G A A C T G T G C A G A C T C A T G A C T G A G T C T G C A

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:AVCAGATGGC
AACAGATGGT
 T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:5
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:AVCAGATGGC
AACAKATGGY
 T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
C T G A T G C A A G T C T C G A A C T G T G C A G C A T A C T G A C T G G A C T

HAND2/MA1638.1/Jaspar

Match Rank:6
Score:0.90
Offset:0
Orientation:forward strand
Alignment:AVCAGATGGC
ACCAGATGGC
 T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
C T G A T G A C A T G C T C G A A C T G T C G A A G C T T C A G A C T G G A T C

TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AVCAGATGGC
DMCAGATGKS
 T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
C G T A T G A C A G T C C G T A A C T G G T C A A C G T A C T G A C G T A T G C

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---AVCAGATGGC----
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C A C G T A C G T A C G T A C G T
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--AVCAGATGGC
VNAVCAGCTGGC
 A C G T A C G T T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer

Match Rank:10
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AVCAGATGGC
NAMCAGCTGK-
 A C G T T C G A T G C A A G T C C G T A A C T G T G C A C G A T A C T G A C T G G A T C
C T A G T C G A T G A C A G T C C G T A A C T G G T A C A C G T A C T G A C T G A C G T