Information for 21-GCTAAGCRAC (Motif 23)

A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C
Reverse Opposite:
A C T G A C G T A G C T A C T G A T G C A C G T A C G T C G T A A C T G A G T C
p-value:1e-30
log p-value:-7.062e+01
Information Content per bp:1.899
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.4 +/- 49.1bp
Average Position of motif in Background125.9 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAGCRAC-
KGTTGCTAGGMAACA
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTAAGCRAC---
CCGCATAGCAACGGA
 A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCTAAGCRAC---
TACCATAGCAACGGT
 A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTAAGCRAC--
SCCTAGCAACAG
 A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GCTAAGCRAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

ZNF682/MA1599.1/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCTAAGCRAC---
CGGGCCAAGCCCCTAT
 A C G T A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T A C G T
A G T C T C A G C T A G T C A G T A G C A G T C T G C A T G C A A C T G A G T C A G T C A T G C G T A C C G A T T C G A A G C T

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTAAGCRAC---
NNTTTANNCGACGNA
 A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T A C G T
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

HLF/MA0043.3/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCTAAGCRAC--
TTGTTATGCAACAA
 A C G T A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C A C G T A C G T
C G A T C A G T T C A G G C A T C A G T C T G A A G C T C T A G G A T C G T C A C T G A A G T C G T C A C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTAAGCRAC
GCTAATCC--
 A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAGCRAC
NGCTN------
 A C G T A C T G A G T C A C G T C G T A G T C A A T C G A G T C C T G A C G T A A G T C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T