Information for 21-CTCGTTAA (Motif 19)

A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T G C A T G T C A C G T A A G T C C A T G G C T A T C A G
p-value:1e-15
log p-value:-3.536e+01
Information Content per bp:1.811
Number of Target Sequences with motif197.0
Percentage of Target Sequences with motif4.89%
Number of Background Sequences with motif1147.8
Percentage of Background Sequences with motif2.62%
Average Position of motif in Targets99.1 +/- 52.6bp
Average Position of motif in Background101.0 +/- 66.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CTCGTTAA--
GCTCGTAAAAA
 A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CTCGTTAA----
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CTCGTTAA
AGCTCATTAT
 A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CTCGTTAA----
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:5
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----CTCGTTAA----
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

POU6F1(var.2)/MA1549.1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--CTCGTTAA
NNCTCATTAT
 A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A
G C T A A T G C T G A C C G A T T G A C G T C A A C G T A G C T C T G A G A C T

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CTCGTTAA----
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CTCGTTAA
CTAATTAA
 A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A
T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-CTCGTTAA---
GGTCGTAAAATT
 A C G T A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CTCGTTAA--
GTCGTAAAAT
 A G T C C G A T G T A C T C A G A C G T A C G T C G T A C G T A A C G T A C G T
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T