Information for 3-CTGCCAAATT (Motif 2)

A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
Reverse Opposite:
G C T A C G T A C G A T G A C T C G A T C T A G T C A G G T A C C G T A T A C G
p-value:1e-142
log p-value:-3.292e+02
Information Content per bp:1.577
Number of Target Sequences with motif2480.0
Percentage of Target Sequences with motif61.61%
Number of Background Sequences with motif18200.6
Percentage of Background Sequences with motif41.61%
Average Position of motif in Targets100.3 +/- 55.0bp
Average Position of motif in Background100.1 +/- 68.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.51
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CTGCCAAATT
TTGCCAAG--
 A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAATT
GGTGCCAAGT-
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CTGCCAAATT
-TGTCANYT-
 A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAATT
CGTGCCAAG--
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAATT
RHTGWCAR---
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAATT
NNTGCCAAGNN
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CTGCCAAATT
-TGCCAGCB-
 A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAATT
GCTGTCAA---
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAATT
CCTGTCAA---
 A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAAATT
VGCTGWCAVB--
 A C G T A C G T A T G C C G A T C A T G A G T C G A T C C G T A C T G A G C T A G C A T C G A T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T