Information for 8-ATTTAAATCGCA (Motif 6)

G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
Reverse Opposite:
C G A T C A T G G A T C C T A G G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T
p-value:1e-36
log p-value:-8.349e+01
Information Content per bp:1.601
Number of Target Sequences with motif868.0
Percentage of Target Sequences with motif21.57%
Number of Background Sequences with motif6195.5
Percentage of Background Sequences with motif14.16%
Average Position of motif in Targets101.8 +/- 55.0bp
Average Position of motif in Background99.9 +/- 66.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ATTTAAATCGCA
ATTTGAATT---
 G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATTTAAATCGCA
-TTTGAAACCG-
 G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATTTAAATCGCA---
ATTTGCATAACAATG
 G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A A C G T A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATTTAAATCGCA
TATGCAAAT----
 A C G T G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATTTAAATCGCA
NCGTATTATAATCNTA
 A C G T A C G T A C G T A C G T G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATTTAAATCGCA---
ATTTGCATAACAAAG
 G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A A C G T A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAAATCGCA
CTCATTTGCATW---
 A C G T A C G T A C G T G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATTTAAATCGCA
-TTTAATTGCN-
 G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T

LMX1B/MA0703.2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ATTTAAATCGCA
TTAATTAAANT---
 A C G T A C G T G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
C A G T A C G T C G T A C G T A A C G T A C G T C G T A T C G A G C T A G C T A G A C T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATTTAAATCGCA
BTVATTWGCATA---
 A C G T A C G T A C G T G C T A G C A T C A G T C G A T G C T A G T C A C G T A C G A T G A T C C T A G G T A C G C T A
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T