Information for 18-CGGATATTCA (Motif 14)

A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G C G T A C G T A A C G T C G T A A C G T A T G C A G T C C T A G
p-value:1e-41
log p-value:-9.470e+01
Information Content per bp:1.900
Number of Target Sequences with motif147.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif91.1
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets103.3 +/- 50.9bp
Average Position of motif in Background96.3 +/- 64.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CGGATATTCA-
-GHATATKCAT
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:CGGATATTCA-
-GAATATTCAT
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CGGATATTCA-
CTCATGAATATTCAT
 A C G T A C G T A C G T A C G T A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CGGATATTCA-------
---ACATTCATGACACG
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CGGATATTCA------
GACCACATTCATACAAT
 A C G T A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGGATATTCA----
CTAATATTGCTAAA
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGGATATTCA----
CTAATATTGCTAAA
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGGATATTCA----
---ATATTTACATA
 A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGGATATTCA
AAGGATATNTN
 A C G T A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGGATATTCA--
AYATGYATATGCATR
 A C G T A C G T A C G T A G T C A C T G T A C G G T C A A C G T C G T A A C G T A C G T A G T C C G T A A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G