Information for 17-ATCTAATTATGC (Motif 17)

G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
Reverse Opposite:
C A T G G T A C G C T A C G A T T C G A G C T A C G A T A C G T C T G A C A T G G C T A C A G T
p-value:1e-30
log p-value:-7.010e+01
Information Content per bp:1.698
Number of Target Sequences with motif379.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif478.7
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets98.9 +/- 51.9bp
Average Position of motif in Background99.1 +/- 64.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VSX2/MA0726.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ATCTAATTATGC
--CTAATTAG--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ATCTAATTATGC
--CTAATTAT--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T A C G T A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATCTAATTATGC
TAATTTAATTA---
 A C G T A C G T G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATCTAATTATGC
-NCTAATTA---
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T A C G T

PRRX2/MA0075.3/Jaspar

Match Rank:5
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATCTAATTATGC
--CTAATTAA--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T A C G T A G T C A G C T T G C A C G T A A C G T A C G T T C G A C T G A A C G T A C G T

VAX1/MA0722.1/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ATCTAATTATGC
--CTAATTAC--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C A C G T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATCTAATTATGC
-NNTAATTANN-
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G A C G T

PH0021.1_Dlx2/Jaspar

Match Rank:8
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ATCTAATTATGC-
CTGANNTAATTATNNN
 A C G T A C G T A C G T G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C A C G T
T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ATCTAATTATGC
--CTAATTAA--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ATCTAATTATGC
AGCTCATTAT--
 G T C A C G A T G T A C G A C T T G C A G C T A C G A T A G C T G C T A C G A T C A T G G T A C
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T