Information for 7-TGCCAYTT (Motif 3)

G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
Reverse Opposite:
T C G A C G T A C T G A A G C T T A C G C T A G T G A C C T G A
p-value:1e-188
log p-value:-4.339e+02
Information Content per bp:1.580
Number of Target Sequences with motif7123.0
Percentage of Target Sequences with motif50.32%
Number of Background Sequences with motif13093.2
Percentage of Background Sequences with motif38.17%
Average Position of motif in Targets101.5 +/- 55.7bp
Average Position of motif in Background99.5 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGCCAYTT
TGTCANYT
 G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGCCAYTT
GGTGCCAAGT
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGCCAYTT
CGTGCCAAG-
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAYTT
CCTGTCAA--
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAYTT
RHTGWCAR--
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAYTT
NTGTCAN--
 A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TGCCAYTT
VGCTGWCAVB-
 A C G T A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAYTT
CTTGGCAA--
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCCAYTT
ATGCCAACC
 A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGCCAYTT--
SCTGTCAVTCAV
 A C G T A C G T G A C T A C T G G A T C A T G C C T G A G A C T G C A T A G C T A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A