Information for 3-CCACTAGGTGGC (Motif 4)

G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
Reverse Opposite:
A T C G G T A C G T A C T G C A A G T C G A T C G A C T C T G A T A C G G A C T A T C G C A T G
p-value:1e-186
log p-value:-4.305e+02
Information Content per bp:1.674
Number of Target Sequences with motif302.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif73.4
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets104.2 +/- 51.9bp
Average Position of motif in Background95.0 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGC-------
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCFL/MA1102.2/Jaspar

Match Rank:4
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CCACTAGGTGGC--
--AGCAGGGGGCGC
 G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C A C G T A C G T
A C G T A C G T T C G A T A C G A T G C T G C A A T C G T C A G A T C G A T C G C A T G G A T C T C A G A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGGTGGC-
DCHCAGCAGGRGGCC
 A C G T A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZKSCAN1/MA1585.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCACTAGGTGGC
ATAGTAGGTG--
 G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
T C G A A G C T T G C A C T A G A C G T G T C A A T C G C A T G A G C T T A C G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACTAGGTGGC
--AACAGATGGC
 G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGTGGC
CACAGCAGGGGG-
 A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic2/MA1629.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGC
CTCACAGCAGGGGG-
 A C G T A C G T A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
T G A C C A G T T G A C G C T A T A G C G T C A T A C G A G T C C T G A C A T G A T C G C T A G T C A G T C A G A C G T

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGGTGGC
CACAGCAGGGG--
 A C G T G T A C A T G C C T G A A T G C G A C T C G T A C T A G T C A G A C G T C A T G C A T G T A G C
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T A C G T