Information for 9-GCTAAATT (Motif 6)

A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T
Reverse Opposite:
G T C A C G T A C G A T C A G T G A C T T C G A T C A G T G A C
p-value:1e-138
log p-value:-3.187e+02
Information Content per bp:1.655
Number of Target Sequences with motif6991.0
Percentage of Target Sequences with motif49.39%
Number of Background Sequences with motif13370.1
Percentage of Background Sequences with motif38.98%
Average Position of motif in Targets100.7 +/- 56.2bp
Average Position of motif in Background100.8 +/- 66.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0171.1_Sox18_2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GCTAAATT------
GGACTGAATTCATGCC
 A C G T A C G T A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G A C T G C T G A A T G C A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A C G A T C T A G G T A C T G A C

PAX4/MA0068.2/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCTAAATT--
--CTAATTAG
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

VSX1/MA0725.1/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCTAAATT--
--CTAATTAT
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T G A T C G A C T G T C A T C G A G A C T C A G T C T G A A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCTAAATT---
-CCTAATTATC
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCTAAATT
ATTTGAATT
 A C G T A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCTAAATT---
-GCTAATTAGC
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

RAX2/MA0717.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCTAAATT--
--NTAATTGG
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A G C T C G A T T C G A C T G A C A G T A G C T C T A G T C A G

UNCX/MA0721.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTAAATT--
--NTAATTAN
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A G C T C G A T C T G A C T G A C A G T G A C T C T G A T C A G

VAX1/MA0722.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCTAAATT--
--CTAATTAC
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T
A C G T A C G T A G T C G A C T G T C A G T C A C G A T C A G T C T G A G A T C

MIXL1/MA0662.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTAAATT---
-NNTAATTANN
 A C T G A G T C A G C T C T G A G T C A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T C G A T T C G A T C G A C G A T A G C T C T G A T C A G G C T A