Information for 9-GTTGCCATGGMA (Motif 9)

C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A
Reverse Opposite:
G C A T C A G T A G T C G A T C G C T A C G A T C T A G T C A G G T A C G C T A G T C A G A T C
p-value:1e-89
log p-value:-2.054e+02
Information Content per bp:1.737
Number of Target Sequences with motif231.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif104.7
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets100.6 +/- 52.3bp
Average Position of motif in Background116.6 +/- 66.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX3/MA0798.2/Jaspar

Match Rank:1
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGMA
CGGTTGCTATGGCA
 A C G T A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A
A G T C A C T G C T A G A G C T G A C T C T A G G A T C G A C T T C G A C A G T C T A G T C A G G T A C C T G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGMA-
GGTTGCCATGGCAA
 A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX1/MA0509.2/Jaspar

Match Rank:3
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGMA
CTGTTGCTATGGCA
 A C G T A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGMA-
NGTTGCCATGGCAA
 A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX5/MA0510.2/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGMA---
CGTTGCCATGGCAACG
 A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGMA---
CGTTGCCATGGCAACG
 A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GTTGCCATGGMA---
GTTGCCATGGCAACM
 C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T A C G T A C G T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:8
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGMA--
CGGTTGCCATGGCAAC
 A C G T A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCCATGGMA---
CGTTGCCATGGCAACN
 A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCCATGGMA
NNCGTTGCTATGGNN
 A C G T A C G T A C G T C T A G A C G T C G A T C A T G A G T C G A T C G C T A C G A T C T A G C T A G G T C A C G T A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A