Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 14156)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 34304)	% of Background Sequences with Motif
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-885	-2.040e+03	0.0000	6121.0	43.24%	6740.7	19.65%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-837	-1.929e+03	0.0000	4856.0	34.31%	4694.5	13.69%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-688	-1.585e+03	0.0000	2836.0	20.04%	2066.6	6.02%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-621	-1.431e+03	0.0000	3258.0	23.02%	2835.5	8.27%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-618	-1.425e+03	0.0000	4050.0	28.61%	4093.7	11.93%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-578	-1.333e+03	0.0000	4839.0	34.19%	5621.7	16.39%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-560	-1.290e+03	0.0000	4344.0	30.69%	4815.1	14.04%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-303	-6.997e+02	0.0000	7798.0	55.09%	13565.3	39.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-216	-4.995e+02	0.0000	3307.0	23.36%	4645.1	13.54%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-190	-4.390e+02	0.0000	2938.0	20.76%	4114.3	11.99%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-190	-4.388e+02	0.0000	2592.0	18.31%	3464.4	10.10%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-147	-3.403e+02	0.0000	1887.0	13.33%	2437.7	7.11%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-137	-3.171e+02	0.0000	3098.0	21.89%	4830.3	14.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-126	-2.912e+02	0.0000	6239.0	44.08%	11776.3	34.33%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-118	-2.728e+02	0.0000	1533.0	10.83%	1978.3	5.77%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-118	-2.721e+02	0.0000	461.0	3.26%	304.4	0.89%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-115	-2.665e+02	0.0000	883.0	6.24%	900.4	2.63%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-112	-2.580e+02	0.0000	295.0	2.08%	135.7	0.40%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-108	-2.498e+02	0.0000	3993.0	28.21%	6992.1	20.38%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-105	-2.429e+02	0.0000	317.0	2.24%	166.2	0.48%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-91	-2.113e+02	0.0000	3458.0	24.43%	6041.8	17.61%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-85	-1.968e+02	0.0000	2972.0	21.00%	5086.5	14.83%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-83	-1.913e+02	0.0000	362.0	2.56%	260.5	0.76%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-77	-1.792e+02	0.0000	1513.0	10.69%	2221.6	6.48%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-76	-1.760e+02	0.0000	1276.0	9.01%	1786.0	5.21%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-74	-1.712e+02	0.0000	2685.0	18.97%	4613.2	13.45%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-69	-1.602e+02	0.0000	3658.0	25.84%	6763.9	19.72%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-69	-1.592e+02	0.0000	4439.0	31.36%	8502.4	24.79%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-66	-1.526e+02	0.0000	2419.0	17.09%	4152.5	12.11%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-65	-1.499e+02	0.0000	5702.0	40.28%	11456.4	33.40%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-64	-1.494e+02	0.0000	3958.0	27.96%	7495.1	21.85%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-64	-1.493e+02	0.0000	1578.0	11.15%	2460.0	7.17%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-64	-1.476e+02	0.0000	4860.0	34.33%	9537.9	27.81%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-63	-1.460e+02	0.0000	456.0	3.22%	449.6	1.31%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-57	-1.333e+02	0.0000	1303.0	9.21%	1985.2	5.79%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-57	-1.330e+02	0.0000	3902.0	27.57%	7484.3	21.82%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-56	-1.297e+02	0.0000	1741.0	12.30%	2870.2	8.37%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-56	-1.295e+02	0.0000	2388.0	16.87%	4212.6	12.28%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-52	-1.209e+02	0.0000	744.0	5.26%	982.4	2.86%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-52	-1.205e+02	0.0000	406.0	2.87%	416.0	1.21%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-51	-1.194e+02	0.0000	535.0	3.78%	625.5	1.82%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-49	-1.150e+02	0.0000	2612.0	18.45%	4777.2	13.93%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-46	-1.078e+02	0.0000	2247.0	15.87%	4041.2	11.78%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-44	-1.035e+02	0.0000	512.0	3.62%	623.5	1.82%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-42	-9.797e+01	0.0000	4025.0	28.44%	8036.0	23.43%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-39	-9.128e+01	0.0000	2649.0	18.71%	5020.8	14.64%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-36	-8.423e+01	0.0000	3512.0	24.81%	6996.8	20.40%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-36	-8.329e+01	0.0000	2193.0	15.49%	4086.7	11.91%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-32	-7.534e+01	0.0000	587.0	4.15%	836.2	2.44%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-32	-7.497e+01	0.0000	4580.0	32.36%	9528.3	27.78%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-32	-7.424e+01	0.0000	2707.0	19.12%	5282.8	15.40%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-30	-6.919e+01	0.0000	1134.0	8.01%	1938.7	5.65%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-29	-6.726e+01	0.0000	437.0	3.09%	588.2	1.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-27	-6.358e+01	0.0000	6575.0	46.45%	14363.0	41.87%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-26	-6.107e+01	0.0000	2278.0	16.09%	4445.9	12.96%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-26	-6.087e+01	0.0000	1705.0	12.05%	3195.6	9.32%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-26	-6.001e+01	0.0000	396.0	2.80%	536.1	1.56%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-25	-5.820e+01	0.0000	1862.0	13.15%	3556.8	10.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-24	-5.746e+01	0.0000	339.0	2.39%	442.6	1.29%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-24	-5.638e+01	0.0000	1745.0	12.33%	3316.3	9.67%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-24	-5.605e+01	0.0000	4118.0	29.09%	8670.3	25.28%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-23	-5.338e+01	0.0000	4211.0	29.75%	8918.6	26.00%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-22	-5.075e+01	0.0000	221.0	1.56%	257.5	0.75%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-21	-4.962e+01	0.0000	2905.0	20.52%	5962.5	17.38%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-21	-4.886e+01	0.0000	161.0	1.14%	165.4	0.48%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-21	-4.876e+01	0.0000	1622.0	11.46%	3110.3	9.07%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-20	-4.818e+01	0.0000	1838.0	12.98%	3588.6	10.46%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-20	-4.780e+01	0.0000	4138.0	29.23%	8819.9	25.71%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-20	-4.628e+01	0.0000	187.0	1.32%	211.7	0.62%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-19	-4.439e+01	0.0000	113.0	0.80%	101.6	0.30%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-19	-4.437e+01	0.0000	1461.0	10.32%	2796.0	8.15%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-17	-4.124e+01	0.0000	89.0	0.63%	72.9	0.21%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-17	-3.982e+01	0.0000	1413.0	9.98%	2731.0	7.96%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-16	-3.910e+01	0.0000	465.0	3.29%	743.3	2.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-16	-3.803e+01	0.0000	716.0	5.06%	1257.0	3.66%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-16	-3.787e+01	0.0000	1093.0	7.72%	2053.0	5.99%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-16	-3.744e+01	0.0000	522.0	3.69%	864.2	2.52%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-15	-3.484e+01	0.0000	802.0	5.67%	1456.7	4.25%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-15	-3.461e+01	0.0000	1068.0	7.55%	2026.0	5.91%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-14	-3.388e+01	0.0000	2022.0	14.28%	4142.0	12.08%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-14	-3.268e+01	0.0000	1006.0	7.11%	1907.3	5.56%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-14	-3.240e+01	0.0000	708.0	5.00%	1275.9	3.72%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-13	-3.192e+01	0.0000	861.0	6.08%	1602.8	4.67%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-13	-3.119e+01	0.0000	629.0	4.44%	1118.8	3.26%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-13	-3.033e+01	0.0000	7622.0	53.85%	17402.4	50.73%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-12	-2.878e+01	0.0000	1321.0	9.33%	2631.9	7.67%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-12	-2.867e+01	0.0000	503.0	3.55%	873.0	2.55%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-12	-2.833e+01	0.0000	550.0	3.89%	972.9	2.84%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-11	-2.709e+01	0.0000	317.0	2.24%	507.1	1.48%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-11	-2.668e+01	0.0000	812.0	5.74%	1538.3	4.48%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-10	-2.470e+01	0.0000	1143.0	8.07%	2279.3	6.64%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-9	-2.241e+01	0.0000	814.0	5.75%	1579.1	4.60%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-9	-2.166e+01	0.0000	381.0	2.69%	664.9	1.94%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-9	-2.107e+01	0.0000	576.0	4.07%	1077.7	3.14%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-8	-2.038e+01	0.0000	543.0	3.84%	1013.0	2.95%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-8	-2.018e+01	0.0000	1861.0	13.15%	3954.9	11.53%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-8	-1.924e+01	0.0000	3190.0	22.54%	7051.7	20.56%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-7	-1.760e+01	0.0000	704.0	4.97%	1384.4	4.04%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-7	-1.688e+01	0.0000	298.0	2.11%	522.1	1.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-7	-1.625e+01	0.0000	203.0	1.43%	333.8	0.97%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-6	-1.601e+01	0.0000	1023.0	7.23%	2110.4	6.15%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-6	-1.472e+01	0.0000	244.0	1.72%	424.4	1.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-6	-1.422e+01	0.0000	318.0	2.25%	581.9	1.70%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-6	-1.394e+01	0.0000	770.0	5.44%	1569.4	4.58%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-5	-1.326e+01	0.0000	622.0	4.39%	1249.0	3.64%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-5	-1.280e+01	0.0000	2203.0	15.56%	4874.1	14.21%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-5	-1.260e+01	0.0000	53.0	0.37%	64.4	0.19%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-5	-1.199e+01	0.0000	1252.0	8.84%	2688.1	7.84%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-5	-1.181e+01	0.0000	457.0	3.23%	900.5	2.63%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-5	-1.163e+01	0.0000	557.0	3.94%	1122.6	3.27%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-4	-1.144e+01	0.0000	3244.0	22.92%	7353.2	21.44%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-4	-1.133e+01	0.0000	1986.0	14.03%	4399.3	12.83%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-4	-1.048e+01	0.0001	1298.0	9.17%	2820.8	8.22%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-4	-1.009e+01	0.0002	1931.0	13.64%	4298.8	12.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-4	-9.572e+00	0.0003	5167.0	36.50%	11994.5	34.97%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-4	-9.456e+00	0.0003	903.0	6.38%	1931.6	5.63%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-4	-9.289e+00	0.0003	383.0	2.71%	763.1	2.22%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-8.981e+00	0.0005	362.0	2.56%	720.3	2.10%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-8.973e+00	0.0005	128.0	0.90%	220.6	0.64%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-3	-8.959e+00	0.0005	1307.0	9.23%	2870.8	8.37%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-8.881e+00	0.0005	78.0	0.55%	121.0	0.35%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-8.473e+00	0.0008	1068.0	7.55%	2328.0	6.79%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-8.102e+00	0.0011	1424.0	10.06%	3160.5	9.21%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-7.777e+00	0.0015	141.0	1.00%	254.8	0.74%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-7.359e+00	0.0022	46.0	0.32%	66.3	0.19%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-6.896e+00	0.0035	597.0	4.22%	1274.1	3.71%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.810e+00	0.0038	1736.0	12.26%	3922.1	11.43%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-6.738e+00	0.0041	2606.0	18.41%	5979.7	17.43%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-6.422e+00	0.0055	345.0	2.44%	711.9	2.08%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.013e+00	0.0083	193.0	1.36%	379.1	1.11%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-5.742e+00	0.0108	143.0	1.01%	273.6	0.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.734e+00	0.0108	1936.0	13.68%	4425.3	12.90%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-2	-5.680e+00	0.0113	268.0	1.89%	548.8	1.60%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-2	-5.660e+00	0.0114	3468.0	24.50%	8071.9	23.53%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.496e+00	0.0134	115.0	0.81%	215.6	0.63%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-2	-5.447e+00	0.0139	164.0	1.16%	322.0	0.94%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-5.383e+00	0.0147	2136.0	15.09%	4910.3	14.32%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-2	-5.381e+00	0.0147	1883.0	13.30%	4311.6	12.57%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.780e+00	0.0266	152.0	1.07%	301.2	0.88%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-2	-4.765e+00	0.0268	2506.0	17.70%	5812.9	16.95%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-1	-4.593e+00	0.0316	848.0	5.99%	1899.9	5.54%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.385e+00	0.0386	1100.0	7.77%	2495.8	7.28%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-4.166e+00	0.0477	12.0	0.08%	14.5	0.04%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.072e+00	0.0521	23.0	0.16%	34.0	0.10%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.011e+00	0.0550	1100.0	7.77%	2506.9	7.31%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.006e+00	0.0550	97.0	0.69%	188.6	0.55%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-1	-3.957e+00	0.0573	1022.0	7.22%	2324.6	6.78%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.949e+00	0.0573	100.0	0.71%	195.4	0.57%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-3.897e+00	0.0600	1079.0	7.62%	2460.2	7.17%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.707e+00	0.0720	295.0	2.08%	636.8	1.86%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-3.631e+00	0.0772	426.0	3.01%	939.9	2.74%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.511e+00	0.0865	581.0	4.10%	1302.9	3.80%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-3.374e+00	0.0985	72.0	0.51%	139.9	0.41%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.343e+00	0.1010	82.0	0.58%	161.1	0.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.306e+00	0.1041	402.0	2.84%	890.8	2.60%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.287e+00	0.1054	12.0	0.08%	16.2	0.05%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.215e+00	0.1125	393.0	2.78%	871.2	2.54%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-3.165e+00	0.1175	2021.0	14.28%	4724.9	13.77%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.050e+00	0.1310	297.0	2.10%	652.2	1.90%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.016e+00	0.1347	165.0	1.17%	350.6	1.02%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.002e+00	0.1357	1172.0	8.28%	2710.0	7.90%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-3.000e+00	0.1357	952.0	6.73%	2189.8	6.38%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.945e+00	0.1420	313.0	2.21%	691.3	2.02%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.903e+00	0.1472	67.0	0.47%	132.7	0.39%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-2.793e+00	0.1633	17.0	0.12%	27.0	0.08%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-2.783e+00	0.1640	20.0	0.14%	33.0	0.10%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.776e+00	0.1641	355.0	2.51%	792.3	2.31%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.725e+00	0.1716	59.0	0.42%	116.7	0.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.625e+00	0.1886	26.0	0.18%	46.6	0.14%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-1	-2.545e+00	0.2030	396.0	2.80%	893.3	2.60%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-2.535e+00	0.2039	1344.0	9.49%	3138.3	9.15%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-2.478e+00	0.2146	2454.0	17.34%	5796.1	16.90%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.363e+00	0.2394	132.0	0.93%	284.7	0.83%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.357e+00	0.2394	282.0	1.99%	631.4	1.84%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.222e+00	0.2724	976.0	6.90%	2275.3	6.63%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.143e+00	0.2932	6.0	0.04%	8.4	0.02%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.008e+00	0.3337	150.0	1.06%	331.3	0.97%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.915e+00	0.3641	68.0	0.48%	144.1	0.42%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.875e+00	0.3769	5407.0	38.20%	12958.5	37.78%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.857e+00	0.3817	33.0	0.23%	66.6	0.19%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.818e+00	0.3949	173.0	1.22%	388.5	1.13%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.773e+00	0.4104	76.0	0.54%	164.3	0.48%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.696e+00	0.4410	1684.0	11.90%	3996.9	11.65%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.632e+00	0.4678	185.0	1.31%	421.0	1.23%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.470e+00	0.5466	3.0	0.02%	5.0	0.01%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.446e+00	0.5570	485.0	3.43%	1137.9	3.32%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.438e+00	0.5584	4.0	0.03%	6.8	0.02%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.421e+00	0.5654	199.0	1.41%	458.8	1.34%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.241e+00	0.6733	1779.0	12.57%	4257.7	12.41%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.185e+00	0.7080	780.0	5.51%	1856.3	5.41%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.139e+00	0.7375	313.0	2.21%	738.4	2.15%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.084e+00	0.7749	1.0	0.01%	0.7	0.00%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.080e+00	0.7749	612.0	4.32%	1458.7	4.25%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.073e+00	0.7753	127.0	0.90%	296.9	0.87%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.050e+00	0.7900	1190.0	8.41%	2852.4	8.32%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.777e-01	0.8445	549.0	3.88%	1312.1	3.83%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.644e-01	0.8515	206.0	1.46%	488.7	1.42%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.642e-01	0.8515	684.0	4.83%	1638.3	4.78%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.485e-01	0.8564	922.0	6.51%	2214.0	6.45%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.248e-01	0.8725	1347.0	9.52%	3241.0	9.45%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.156e-01	0.8762	55.0	0.39%	128.8	0.38%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.058e-01	0.8805	14.0	0.10%	31.2	0.09%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.913e-01	0.8889	1143.0	8.07%	2751.1	8.02%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.561e-01	0.9163	968.0	6.84%	2331.9	6.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.525e-01	0.9163	350.0	2.47%	839.8	2.45%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.378e-01	0.9241	871.0	6.15%	2098.7	6.12%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-8.204e-01	0.9358	954.0	6.74%	2300.2	6.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-7.922e-01	0.9579	1137.0	8.03%	2745.7	8.00%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-7.253e-01	1.0000	705.0	4.98%	1705.4	4.97%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.022e-01	1.0000	360.0	2.54%	871.9	2.54%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.980e-01	1.0000	1355.0	9.57%	3282.2	9.57%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.977e-01	1.0000	454.0	3.21%	1099.6	3.21%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-6.851e-01	1.0000	615.0	4.34%	1490.9	4.35%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.616e-01	1.0000	745.0	5.26%	1807.6	5.27%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-6.578e-01	1.0000	6.0	0.04%	14.6	0.04%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-6.549e-01	1.0000	3941.0	27.84%	9555.0	27.86%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.347e-01	1.0000	10.0	0.07%	24.4	0.07%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.337e-01	1.0000	892.0	6.30%	2166.4	6.32%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-6.280e-01	1.0000	933.0	6.59%	2266.7	6.61%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.217e-01	1.0000	156.0	1.10%	380.2	1.11%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.956e-01	1.0000	126.0	0.89%	308.7	0.90%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.793e-01	1.0000	77.0	0.54%	189.7	0.55%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.594e-01	1.0000	1241.0	8.77%	3021.9	8.81%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.446e-01	1.0000	737.0	5.21%	1798.7	5.24%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.229e-01	1.0000	124.0	0.88%	306.5	0.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.229e-01	1.0000	124.0	0.88%	306.5	0.89%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-5.144e-01	1.0000	5469.0	38.64%	13286.2	38.73%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.020e-01	1.0000	100.0	0.71%	248.7	0.73%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-4.952e-01	1.0000	6013.0	42.48%	14609.7	42.59%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.919e-01	1.0000	237.0	1.67%	584.5	1.70%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.891e-01	1.0000	445.0	3.14%	1092.6	3.19%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.863e-01	1.0000	167.0	1.18%	413.1	1.20%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.855e-01	1.0000	531.0	3.75%	1303.0	3.80%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-4.841e-01	1.0000	533.0	3.77%	1307.6	3.81%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.697e-01	1.0000	1037.0	7.33%	2536.1	7.39%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.526e-01	1.0000	41.0	0.29%	104.5	0.30%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.435e-01	1.0000	554.0	3.91%	1362.6	3.97%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.338e-01	1.0000	44.0	0.31%	112.3	0.33%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.311e-01	1.0000	497.0	3.51%	1225.0	3.57%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.861e-01	1.0000	624.0	4.41%	1539.5	4.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.690e-01	1.0000	313.0	2.21%	779.3	2.27%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.664e-01	1.0000	92.0	0.65%	234.8	0.68%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.642e-01	1.0000	2706.0	19.12%	6614.3	19.28%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.438e-01	1.0000	175.0	1.24%	441.4	1.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.258e-01	1.0000	3485.0	24.62%	8517.9	24.83%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.209e-01	1.0000	265.0	1.87%	665.2	1.94%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-3.054e-01	1.0000	335.0	2.37%	839.7	2.45%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-2.965e-01	1.0000	1602.0	11.32%	3941.4	11.49%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.726e-01	1.0000	1977.0	13.97%	4861.2	14.17%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.701e-01	1.0000	1419.0	10.02%	3500.5	10.21%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.556e-01	1.0000	467.0	3.30%	1170.3	3.41%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-2.470e-01	1.0000	1563.0	11.04%	3857.3	11.25%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.443e-01	1.0000	1157.0	8.17%	2865.6	8.35%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.400e-01	1.0000	92.0	0.65%	241.4	0.70%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.292e-01	1.0000	1562.0	11.03%	3859.9	11.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.266e-01	1.0000	1213.0	8.57%	3006.7	8.77%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.263e-01	1.0000	1195.0	8.44%	2962.1	8.64%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.199e-01	1.0000	886.0	6.26%	2206.2	6.43%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.129e-01	1.0000	1503.0	10.62%	3719.6	10.84%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.071e-01	1.0000	229.0	1.62%	587.7	1.71%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-2.060e-01	1.0000	779.0	5.50%	1946.1	5.67%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.979e-01	1.0000	7397.0	52.26%	18055.8	52.64%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.920e-01	1.0000	154.0	1.09%	401.7	1.17%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.818e-01	1.0000	1321.0	9.33%	3282.7	9.57%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.667e-01	1.0000	1170.0	8.27%	2916.5	8.50%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.645e-01	1.0000	25.0	0.18%	73.7	0.21%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.608e-01	1.0000	37.0	0.26%	105.0	0.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.434e-01	1.0000	105.0	0.74%	282.9	0.82%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.434e-01	1.0000	1041.0	7.35%	2606.5	7.60%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.433e-01	1.0000	511.0	3.61%	1298.4	3.79%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.426e-01	1.0000	641.0	4.53%	1620.4	4.72%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.393e-01	1.0000	930.0	6.57%	2334.1	6.80%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.328e-01	1.0000	158.0	1.12%	418.7	1.22%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.318e-01	1.0000	370.0	2.61%	950.3	2.77%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.146e-01	1.0000	2066.0	14.60%	5132.2	14.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.034e-01	1.0000	52.0	0.37%	149.7	0.44%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.609e-02	1.0000	164.0	1.16%	439.6	1.28%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-9.173e-02	1.0000	1022.0	7.22%	2579.0	7.52%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-8.860e-02	1.0000	419.0	2.96%	1083.4	3.16%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.377e-02	1.0000	260.0	1.84%	686.0	2.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.592e-02	1.0000	294.0	2.08%	776.6	2.26%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.590e-02	1.0000	201.0	1.42%	540.9	1.58%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.477e-02	1.0000	847.0	5.98%	2158.9	6.29%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-6.369e-02	1.0000	539.0	3.81%	1392.9	4.06%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.031e-02	1.0000	16.0	0.11%	55.2	0.16%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.923e-02	1.0000	513.0	3.62%	1329.2	3.88%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-5.812e-02	1.0000	724.0	5.11%	1856.8	5.41%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.539e-02	1.0000	1175.0	8.30%	2976.7	8.68%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.026e-02	1.0000	353.0	2.49%	931.2	2.71%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.710e-02	1.0000	3931.0	27.77%	9743.7	28.41%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.228e-02	1.0000	596.0	4.21%	1546.9	4.51%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.133e-02	1.0000	116.0	0.82%	328.6	0.96%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.948e-02	1.0000	541.0	3.82%	1410.0	4.11%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.812e-02	1.0000	71.0	0.50%	210.4	0.61%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.689e-02	1.0000	256.0	1.81%	691.8	2.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.609e-02	1.0000	32.0	0.23%	104.6	0.30%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.591e-02	1.0000	3002.0	21.21%	7488.6	21.83%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.060e-02	1.0000	27.0	0.19%	91.0	0.27%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.024e-02	1.0000	827.0	5.84%	2133.3	6.22%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.977e-02	1.0000	97.0	0.69%	282.5	0.82%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.956e-02	1.0000	4080.0	28.82%	10134.4	29.55%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.711e-02	1.0000	657.0	4.64%	1711.4	4.99%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.644e-02	1.0000	48.0	0.34%	151.1	0.44%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.413e-02	1.0000	47.0	0.33%	149.4	0.44%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.066e-02	1.0000	156.0	1.10%	442.0	1.29%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.969e-02	1.0000	8.0	0.06%	36.8	0.11%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.910e-02	1.0000	936.0	6.61%	2419.3	7.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.740e-02	1.0000	1080.0	7.63%	2781.3	8.11%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.707e-02	1.0000	365.0	2.58%	984.8	2.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.629e-02	1.0000	331.0	2.34%	898.9	2.62%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.451e-02	1.0000	456.0	3.22%	1219.2	3.55%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.317e-02	1.0000	958.0	6.77%	2485.5	7.25%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.262e-02	1.0000	300.0	2.12%	823.3	2.40%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.242e-02	1.0000	541.0	3.82%	1438.4	4.19%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.231e-02	1.0000	622.0	4.39%	1643.6	4.79%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.195e-02	1.0000	110.0	0.78%	327.7	0.96%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.195e-02	1.0000	110.0	0.78%	327.7	0.96%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.100e-02	1.0000	63.0	0.45%	200.4	0.58%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-9.306e-03	1.0000	976.0	6.90%	2540.3	7.41%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.212e-03	1.0000	262.0	1.85%	730.0	2.13%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.077e-03	1.0000	1541.0	10.89%	3949.4	11.51%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.392e-03	1.0000	273.0	1.93%	760.9	2.22%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.161e-03	1.0000	320.0	2.26%	882.4	2.57%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-7.544e-03	1.0000	5493.0	38.81%	13652.7	39.80%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.921e-03	1.0000	253.0	1.79%	711.2	2.07%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.760e-03	1.0000	1135.0	8.02%	2947.4	8.59%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.791e-03	1.0000	65.0	0.46%	211.0	0.62%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-5.549e-03	1.0000	1857.0	13.12%	4750.3	13.85%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.513e-03	1.0000	1653.0	11.68%	4244.1	12.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.511e-03	1.0000	50.0	0.35%	169.5	0.49%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.018e-03	1.0000	988.0	6.98%	2588.0	7.54%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.535e-03	1.0000	454.0	3.21%	1237.7	3.61%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.449e-03	1.0000	366.0	2.59%	1011.6	2.95%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.405e-03	1.0000	97.0	0.69%	302.3	0.88%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.260e-03	1.0000	39.0	0.28%	139.1	0.41%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-4.031e-03	1.0000	115.0	0.81%	352.5	1.03%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.003e-03	1.0000	722.0	5.10%	1922.9	5.61%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-3.818e-03	1.0000	296.0	2.09%	832.9	2.43%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.767e-03	1.0000	351.0	2.48%	975.6	2.84%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.966e-03	1.0000	843.0	5.96%	2235.0	6.52%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.104e-03	1.0000	401.0	2.83%	1114.9	3.25%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.479e-03	1.0000	293.0	2.07%	838.0	2.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.457e-03	1.0000	224.0	1.58%	656.2	1.91%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.443e-03	1.0000	379.0	2.68%	1063.6	3.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.150e-03	1.0000	818.0	5.78%	2193.4	6.39%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.150e-03	1.0000	507.0	3.58%	1398.3	4.08%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.002e-03	1.0000	17.0	0.12%	79.7	0.23%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.490e-04	1.0000	843.0	5.96%	2263.4	6.60%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-7.510e-04	1.0000	2113.0	14.93%	5451.3	15.89%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.960e-04	1.0000	477.0	3.37%	1329.5	3.88%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-6.270e-04	1.0000	1552.0	10.96%	4057.2	11.83%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.830e-04	1.0000	184.0	1.30%	567.0	1.65%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.440e-04	1.0000	476.0	3.36%	1343.6	3.92%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.250e-04	1.0000	255.0	1.80%	768.1	2.24%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.100e-05	1.0000	182.0	1.29%	574.0	1.67%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-7.800e-05	1.0000	57.0	0.40%	219.0	0.64%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.400e-05	1.0000	560.0	3.96%	1580.5	4.61%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.800e-05	1.0000	104.0	0.73%	358.3	1.04%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.600e-05	1.0000	697.0	4.92%	1943.7	5.67%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.500e-05	1.0000	143.0	1.01%	473.1	1.38%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.300e-05	1.0000	197.0	1.39%	624.5	1.82%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-3.000e-05	1.0000	71.0	0.50%	266.8	0.78%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.900e-05	1.0000	193.0	1.36%	614.5	1.79%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.600e-05	1.0000	1123.0	7.93%	3056.4	8.91%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.600e-05	1.0000	876.0	6.19%	2423.1	7.06%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.300e-05	1.0000	2046.0	14.45%	5393.4	15.72%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.300e-05	1.0000	161.0	1.14%	532.6	1.55%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-9.000e-06	1.0000	36.0	0.25%	164.9	0.48%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.000e-06	1.0000	32.0	0.23%	151.3	0.44%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.000e-06	1.0000	34.0	0.24%	159.7	0.47%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-6.000e-06	1.0000	30.0	0.21%	146.2	0.43%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.000e-06	1.0000	302.0	2.13%	933.4	2.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-3.000e-06	1.0000	1274.0	9.00%	3471.3	10.12%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.000e-06	1.0000	595.0	4.20%	1717.3	5.01%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-3.000e-06	1.0000	2236.0	15.80%	5904.5	17.21%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.000e-06	1.0000	831.0	5.87%	2337.1	6.81%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-2.000e-06	1.0000	339.0	2.39%	1038.9	3.03%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.000e-06	1.0000	2316.0	16.36%	6122.3	17.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.000e-06	1.0000	407.0	2.88%	1233.4	3.60%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.000e-06	1.0000	2175.0	15.37%	5782.4	16.86%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-0.000e+00	1.0000	76.0	0.54%	307.6	0.90%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	707.0	4.99%	2040.2	5.95%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	703.0	4.97%	2033.0	5.93%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-0.000e+00	1.0000	4046.0	28.58%	10477.7	30.55%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	157.0	1.11%	556.4	1.62%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-0.000e+00	1.0000	2025.0	14.31%	5441.0	15.86%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	335.0	2.37%	1058.6	3.09%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	84.0	0.59%	342.8	1.00%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e0	-0.000e+00	1.0000	288.0	2.03%	951.4	2.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-0.000e+00	1.0000	185.0	1.31%	663.9	1.94%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	2633.0	18.60%	7094.9	20.68%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-0.000e+00	1.0000	945.0	6.68%	2769.3	8.07%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	714.0	5.04%	2156.9	6.29%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-0.000e+00	1.0000	3769.0	26.63%	9951.1	29.01%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-0.000e+00	1.0000	76.0	0.54%	350.5	1.02%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	1226.0	8.66%	3518.7	10.26%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	355.0	2.51%	1184.4	3.45%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-0.000e+00	1.0000	1055.0	7.45%	3075.4	8.97%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	2788.0	19.70%	7537.5	21.97%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-0.000e+00	1.0000	410.0	2.90%	1361.8	3.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	29.0	0.20%	201.6	0.59%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	2334.0	16.49%	6429.3	18.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	2011.0	14.21%	5619.4	16.38%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	941.0	6.65%	2841.9	8.29%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	2332.0	16.47%	6472.3	18.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	1084.0	7.66%	3238.0	9.44%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	126.0	0.89%	561.8	1.64%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-0.000e+00	1.0000	2265.0	16.00%	6353.8	18.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	811.0	5.73%	2563.9	7.47%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	475.0	3.36%	1633.6	4.76%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	0.000e+00	1.0000	1519.0	10.73%	4710.2	13.73%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	638.0	4.51%	3370.4	9.83%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	806.0	5.69%	4093.2	11.93%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	1216.0	8.59%	3878.6	11.31%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	51.0	0.36%	484.4	1.41%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	729.0	5.15%	3042.5	8.87%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	1410.0	9.96%	5735.4	16.72%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	0.000e+00	1.0000	418.0	2.95%	1975.6	5.76%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	339.0	2.39%	1672.8	4.88%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	0.000e+00	1.0000	144.0	1.02%	698.7	2.04%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	0.000e+00	1.0000	317.0	2.24%	1264.6	3.69%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	0.000e+00	1.0000	1480.0	10.46%	4472.1	13.04%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	409.0	2.89%	1898.8	5.54%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	535.0	3.78%	3021.0	8.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	305.0	2.15%	1419.9	4.14%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	0.000e+00	1.0000	609.0	4.30%	2640.0	7.70%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	583.0	4.12%	2125.2	6.20%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	2515.0	17.77%	9522.3	27.76%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	14.0	0.10%	280.9	0.82%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	0.000e+00	1.0000	658.0	4.65%	2392.0	6.97%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	0.000e+00	1.0000	262.0	1.85%	1264.3	3.69%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	0.000e+00	1.0000	516.0	3.65%	1772.2	5.17%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	1432.0	10.12%	4397.8	12.82%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	0.000e+00	1.0000	2474.0	17.48%	7883.7	22.98%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	1112.0	7.86%	3493.8	10.19%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	2454.0	17.34%	7211.4	21.02%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	2520.0	17.80%	7066.2	20.60%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	3283.0	23.19%	12126.2	35.35%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	865.0	6.11%	4045.8	11.79%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	366.0	2.59%	1871.6	5.46%