Information for 13-CTGCCAAGCAGA (Motif 17)

G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
Reverse Opposite:
A G C T A T G C G C A T A C T G A G T C G A C T C A G T C A T G A C T G T A G C C G T A C A T G
p-value:1e-64
log p-value:-1.489e+02
Information Content per bp:1.504
Number of Target Sequences with motif1856.0
Percentage of Target Sequences with motif4.14%
Number of Background Sequences with motif1205.6
Percentage of Background Sequences with motif2.73%
Average Position of motif in Targets100.3 +/- 56.9bp
Average Position of motif in Background101.7 +/- 62.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAAGCAGA
NNTGCCAAGNN--
 A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGCCAAGCAGA
TTGCCAAG----
 G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAGCAGA
GGTGCCAAGT---
 A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAGCAGA
SCTGTCAVTCAV-
 A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAGCAGA
CGTGCCAAG----
 A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFYA/MA0060.3/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGCCAAGCAGA
-AACCAATCAGA
 G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
A C G T T C G A C T G A A G T C G A T C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

NFYC/MA1644.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGCCAAGCAGA
-AGCCAATCAGA
 G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
A C G T T C G A C T A G A G T C G T A C G C T A T C G A G A C T T A G C T C G A T A C G T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAAGCAGA
NCTGTCAATCAN-
 A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

STAT3/MA0144.2/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGCCAAGCAGA
TTTCCCAGAAN-
 G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTGCCAAGCAGA
GSCTGTCACTCA--
 A C G T A C G T G T A C G C A T A T C G T G A C G T A C G T C A C T G A T C A G T G A C C G T A T A C G T C G A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T