Information for 15-CAGTGTAAATCA (Motif 21)

A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A
Reverse Opposite:
C G A T A T C G G T C A A G C T G A C T A C G T T G C A A T G C G C T A G A T C C G A T T C A G
p-value:1e-42
log p-value:-9.711e+01
Information Content per bp:1.531
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif9.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets100.3 +/- 51.6bp
Average Position of motif in Background94.6 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGTGTAAATCA-----
AAGGCGAAATCATCGCA
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

NFAT5/MA0606.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGTGTAAATCA
-NATGGAAAAN-
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A
A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGTGTAAATCA
-AATGGAAAAT-
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A
A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGTGTAAATCA--
NCWRWGTAAACANSV
 A C G T A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGTGTAAATCA-
-SCTGTCAVTCAV
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGTAAATCA
GAAAGTGAAAGT--
 A C G T A C G T A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGTGTAAATCA-
-WATGCAAATGAG
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGTGTAAATCA
-TATGTAAATAT
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A
A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T

SPI1/MA0080.5/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAGTGTAAATCA----
AAAAAAGAGGAAGTGAAAAA
 A C G T A C G T A C G T A C G T A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T A C G T A C G T A C G T
C T G A C T G A C T G A C T G A C T G A C G T A T C A G C T G A C T A G C T A G T C G A C G T A T C A G C G A T T A C G T C G A C T G A C T G A C T G A C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGTGTAAATCA-
-NCTGTCAATCAN
 A G T C G C T A C T A G C G A T T A C G A C G T T G C A C T G A T C G A C A G T T A G C G C T A A C G T
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A