Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 44877)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44195)	% of Background Sequences with Motif
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-222	-5.124e+02	0.0000	10232.0	22.80%	7477.8	16.92%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-212	-4.896e+02	0.0000	7644.0	17.03%	5300.3	12.00%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-209	-4.835e+02	0.0000	8237.0	18.35%	5817.8	13.17%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-207	-4.789e+02	0.0000	9462.0	21.08%	6884.4	15.58%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e-207	-4.775e+02	0.0000	5840.0	13.01%	3824.2	8.65%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-200	-4.625e+02	0.0000	2581.0	5.75%	1330.7	3.01%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-195	-4.498e+02	0.0000	5103.0	11.37%	3275.1	7.41%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e-188	-4.347e+02	0.0000	10162.0	22.64%	7608.0	17.22%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e-180	-4.146e+02	0.0000	11691.0	26.05%	9026.1	20.43%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-163	-3.754e+02	0.0000	10962.0	24.43%	8483.7	19.20%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-135	-3.119e+02	0.0000	15660.0	34.89%	13020.8	29.47%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-134	-3.094e+02	0.0000	8815.0	19.64%	6757.6	15.29%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-132	-3.057e+02	0.0000	9025.0	20.11%	6955.5	15.74%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-132	-3.040e+02	0.0000	2689.0	5.99%	1605.4	3.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-128	-2.952e+02	0.0000	11322.0	25.23%	9061.3	20.51%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-126	-2.915e+02	0.0000	4910.0	10.94%	3421.2	7.74%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-120	-2.784e+02	0.0000	6441.0	14.35%	4759.9	10.77%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-119	-2.752e+02	0.0000	11140.0	24.82%	8964.1	20.29%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-105	-2.421e+02	0.0000	16801.0	37.44%	14383.9	32.55%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-95	-2.207e+02	0.0000	8010.0	17.85%	6317.4	14.30%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-87	-2.017e+02	0.0000	8657.0	19.29%	6968.2	15.77%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-82	-1.896e+02	0.0000	15720.0	35.03%	13599.9	30.78%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-80	-1.848e+02	0.0000	9952.0	22.17%	8219.0	18.60%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-79	-1.838e+02	0.0000	2334.0	5.20%	1523.4	3.45%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-74	-1.723e+02	0.0000	10539.0	23.48%	8814.0	19.95%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-66	-1.532e+02	0.0000	2925.0	6.52%	2074.1	4.69%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-64	-1.485e+02	0.0000	22643.0	50.45%	20520.4	46.44%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-60	-1.402e+02	0.0000	692.0	1.54%	339.6	0.77%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-60	-1.388e+02	0.0000	8443.0	18.81%	7029.2	15.91%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-59	-1.359e+02	0.0000	816.0	1.82%	430.5	0.97%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-56	-1.293e+02	0.0000	615.0	1.37%	298.0	0.67%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-55	-1.277e+02	0.0000	3145.0	7.01%	2327.1	5.27%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-53	-1.227e+02	0.0000	1190.0	2.65%	726.9	1.65%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-52	-1.217e+02	0.0000	21523.0	47.96%	19594.8	44.35%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-48	-1.117e+02	0.0000	6930.0	15.44%	5764.7	13.05%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-38	-8.943e+01	0.0000	14445.0	32.19%	12965.9	29.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-38	-8.800e+01	0.0000	10548.0	23.50%	9265.4	20.97%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-36	-8.502e+01	0.0000	2111.0	4.70%	1562.1	3.54%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-33	-7.797e+01	0.0000	7821.0	17.43%	6766.3	15.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-31	-7.217e+01	0.0000	1265.0	2.82%	883.0	2.00%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-31	-7.205e+01	0.0000	5270.0	11.74%	4436.2	10.04%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-31	-7.164e+01	0.0000	7711.0	17.18%	6702.5	15.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-30	-7.027e+01	0.0000	964.0	2.15%	640.9	1.45%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-30	-7.021e+01	0.0000	6869.0	15.31%	5925.4	13.41%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-30	-6.979e+01	0.0000	173.0	0.39%	61.0	0.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-30	-6.908e+01	0.0000	5117.0	11.40%	4311.7	9.76%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e-29	-6.739e+01	0.0000	4945.0	11.02%	4162.2	9.42%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-28	-6.674e+01	0.0000	483.0	1.08%	272.0	0.62%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-27	-6.252e+01	0.0000	1293.0	2.88%	929.0	2.10%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-26	-6.123e+01	0.0000	9482.0	21.13%	8441.3	19.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-26	-6.096e+01	0.0000	1287.0	2.87%	928.6	2.10%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-25	-5.834e+01	0.0000	684.0	1.52%	439.8	1.00%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-25	-5.817e+01	0.0000	7594.0	16.92%	6681.2	15.12%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-24	-5.554e+01	0.0000	7350.0	16.38%	6470.7	14.64%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-23	-5.484e+01	0.0000	1007.0	2.24%	709.9	1.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-23	-5.387e+01	0.0000	2317.0	5.16%	1846.7	4.18%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-22	-5.211e+01	0.0000	8357.0	18.62%	7445.6	16.85%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-21	-4.854e+01	0.0000	3991.0	8.89%	3388.8	7.67%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-21	-4.839e+01	0.0000	9009.0	20.07%	8093.8	18.32%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-20	-4.732e+01	0.0000	4336.0	9.66%	3713.1	8.40%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-20	-4.706e+01	0.0000	1198.0	2.67%	891.8	2.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-19	-4.554e+01	0.0000	4742.0	10.57%	4100.2	9.28%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-19	-4.455e+01	0.0000	1880.0	4.19%	1495.1	3.38%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-19	-4.436e+01	0.0000	14799.0	32.97%	13689.3	30.98%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-18	-4.224e+01	0.0000	3642.0	8.11%	3104.0	7.02%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-17	-4.139e+01	0.0000	9084.0	20.24%	8225.3	18.62%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-17	-4.096e+01	0.0000	1189.0	2.65%	902.0	2.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-17	-4.037e+01	0.0000	6871.0	15.31%	6133.5	13.88%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-17	-3.982e+01	0.0000	4680.0	10.43%	4080.8	9.24%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e-17	-3.952e+01	0.0000	4578.0	10.20%	3987.8	9.03%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-16	-3.870e+01	0.0000	3044.0	6.78%	2574.4	5.83%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-16	-3.786e+01	0.0000	4150.0	9.25%	3600.4	8.15%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-16	-3.745e+01	0.0000	7352.0	16.38%	6613.5	14.97%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-16	-3.697e+01	0.0000	3164.0	7.05%	2694.6	6.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-15	-3.663e+01	0.0000	4297.0	9.57%	3745.6	8.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-14	-3.365e+01	0.0000	1046.0	2.33%	802.2	1.82%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-14	-3.280e+01	0.0000	2043.0	4.55%	1693.7	3.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-13	-3.171e+01	0.0000	4085.0	9.10%	3582.8	8.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-13	-3.130e+01	0.0000	4878.0	10.87%	4328.9	9.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-13	-3.116e+01	0.0000	5988.0	13.34%	5376.8	12.17%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-13	-3.079e+01	0.0000	4204.0	9.37%	3700.0	8.37%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-13	-3.053e+01	0.0000	3898.0	8.69%	3416.9	7.73%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-13	-3.016e+01	0.0000	5121.0	11.41%	4566.5	10.33%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-12	-2.883e+01	0.0000	4478.0	9.98%	3972.7	8.99%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-12	-2.875e+01	0.0000	12962.0	28.88%	12089.2	27.36%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-12	-2.799e+01	0.0000	3300.0	7.35%	2877.4	6.51%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-11	-2.761e+01	0.0000	3310.0	7.38%	2889.9	6.54%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-11	-2.753e+01	0.0000	3449.0	7.68%	3019.4	6.83%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-11	-2.752e+01	0.0000	1292.0	2.88%	1042.9	2.36%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-11	-2.721e+01	0.0000	5436.0	12.11%	4889.3	11.07%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-11	-2.692e+01	0.0000	2303.0	5.13%	1962.1	4.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-11	-2.625e+01	0.0000	2610.0	5.82%	2249.1	5.09%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-11	-2.580e+01	0.0000	1804.0	4.02%	1512.4	3.42%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-10	-2.443e+01	0.0000	5772.0	12.86%	5235.0	11.85%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-10	-2.422e+01	0.0000	1999.0	4.45%	1699.8	3.85%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-10	-2.419e+01	0.0000	2797.0	6.23%	2436.8	5.51%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-10	-2.379e+01	0.0000	8020.0	17.87%	7387.5	16.72%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-10	-2.317e+01	0.0000	4214.0	9.39%	3771.5	8.54%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-9	-2.300e+01	0.0000	3329.0	7.42%	2941.6	6.66%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-9	-2.225e+01	0.0000	106.0	0.24%	53.4	0.12%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-9	-2.215e+01	0.0000	3800.0	8.47%	3390.3	7.67%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-9	-2.173e+01	0.0000	4939.0	11.00%	4470.4	10.12%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-9	-2.113e+01	0.0000	5317.0	11.85%	4835.4	10.94%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-9	-2.079e+01	0.0000	2250.0	5.01%	1952.3	4.42%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-8	-2.059e+01	0.0000	3638.0	8.11%	3251.0	7.36%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-8	-2.055e+01	0.0000	2599.0	5.79%	2278.7	5.16%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-8	-2.051e+01	0.0000	2101.0	4.68%	1816.3	4.11%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-8	-2.035e+01	0.0000	2562.0	5.71%	2245.6	5.08%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-8	-2.007e+01	0.0000	13862.0	30.89%	13084.5	29.61%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-8	-1.994e+01	0.0000	14011.0	31.22%	13231.1	29.94%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-8	-1.988e+01	0.0000	8246.0	18.37%	7652.2	17.32%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-7	-1.824e+01	0.0000	4453.0	9.92%	4044.4	9.15%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-7	-1.821e+01	0.0000	12663.0	28.22%	11948.1	27.04%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-7	-1.817e+01	0.0000	758.0	1.69%	606.2	1.37%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-7	-1.808e+01	0.0000	21267.0	47.39%	20360.8	46.08%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-7	-1.722e+01	0.0000	5804.0	12.93%	5343.3	12.09%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e-7	-1.622e+01	0.0000	2849.0	6.35%	2547.9	5.77%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e-7	-1.619e+01	0.0000	9192.0	20.48%	8616.7	19.50%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-7	-1.612e+01	0.0000	3962.0	8.83%	3600.9	8.15%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-6	-1.608e+01	0.0000	2508.0	5.59%	2228.7	5.04%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-6	-1.592e+01	0.0000	2125.0	4.73%	1871.6	4.24%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-6	-1.582e+01	0.0000	8711.0	19.41%	8157.5	18.46%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-6	-1.572e+01	0.0000	953.0	2.12%	792.3	1.79%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-6	-1.519e+01	0.0000	1604.0	3.57%	1392.9	3.15%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-6	-1.507e+01	0.0000	852.0	1.90%	704.9	1.60%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-6	-1.486e+01	0.0000	1222.0	2.72%	1042.7	2.36%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e-6	-1.457e+01	0.0000	1553.0	3.46%	1349.4	3.05%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-6	-1.424e+01	0.0000	2227.0	4.96%	1980.1	4.48%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-5	-1.361e+01	0.0000	955.0	2.13%	805.5	1.82%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-5	-1.343e+01	0.0000	1938.0	4.32%	1716.4	3.88%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-5	-1.325e+01	0.0000	1352.0	3.01%	1173.0	2.65%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-5	-1.261e+01	0.0000	2782.0	6.20%	2518.0	5.70%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-5	-1.254e+01	0.0000	3626.0	8.08%	3320.4	7.51%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-5	-1.247e+01	0.0000	2845.0	6.34%	2579.1	5.84%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-5	-1.247e+01	0.0000	1070.0	2.38%	917.7	2.08%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.227e+01	0.0000	3379.0	7.53%	3088.7	6.99%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-5	-1.220e+01	0.0000	7390.0	16.47%	6938.1	15.70%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e-5	-1.191e+01	0.0000	1141.0	2.54%	987.0	2.23%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-5	-1.183e+01	0.0000	10527.0	23.46%	9984.3	22.60%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-5	-1.171e+01	0.0000	672.0	1.50%	558.0	1.26%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-5	-1.162e+01	0.0000	1446.0	3.22%	1271.6	2.88%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-5	-1.159e+01	0.0000	143.0	0.32%	96.2	0.22%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-1.069e+01	0.0001	1449.0	3.23%	1281.8	2.90%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-4	-1.023e+01	0.0001	380.0	0.85%	303.4	0.69%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-4	-9.978e+00	0.0001	12423.0	27.68%	11868.7	26.86%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-9.910e+00	0.0001	30.0	0.07%	13.4	0.03%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-9.901e+00	0.0002	419.0	0.93%	339.1	0.77%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-4	-9.884e+00	0.0002	612.0	1.36%	513.7	1.16%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-4	-9.754e+00	0.0002	4513.0	10.06%	4205.2	9.52%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-4	-9.688e+00	0.0002	1313.0	2.93%	1162.3	2.63%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-4	-9.670e+00	0.0002	2721.0	6.06%	2492.1	5.64%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-4	-9.541e+00	0.0002	3452.0	7.69%	3191.4	7.22%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-8.825e+00	0.0004	8883.0	19.79%	8447.5	19.12%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-3	-8.812e+00	0.0004	5802.0	12.93%	5462.4	12.36%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-8.725e+00	0.0005	7201.0	16.05%	6817.5	15.43%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-3	-8.546e+00	0.0005	4137.0	9.22%	3862.9	8.74%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-3	-8.545e+00	0.0005	390.0	0.87%	319.3	0.72%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-3	-8.303e+00	0.0007	5687.0	12.67%	5360.5	12.13%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-7.986e+00	0.0009	858.0	1.91%	751.3	1.70%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-3	-7.986e+00	0.0009	1601.0	3.57%	1448.3	3.28%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.699e+00	0.0012	3013.0	6.71%	2796.2	6.33%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-3	-7.687e+00	0.0012	5399.0	12.03%	5093.8	11.53%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-3	-7.536e+00	0.0014	474.0	1.06%	400.4	0.91%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-7.281e+00	0.0018	1367.0	3.05%	1234.0	2.79%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-3	-7.220e+00	0.0020	18250.0	40.66%	17642.1	39.93%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-6.644e+00	0.0035	223.0	0.50%	179.0	0.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-6.614e+00	0.0035	489.0	1.09%	419.3	0.95%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-2	-6.583e+00	0.0036	2582.0	5.75%	2399.7	5.43%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.457e+00	0.0041	967.0	2.15%	865.0	1.96%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-6.285e+00	0.0048	3878.0	8.64%	3650.3	8.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-2	-6.182e+00	0.0053	279.0	0.62%	230.2	0.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-6.180e+00	0.0053	550.0	1.23%	478.5	1.08%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.157e+00	0.0054	2370.0	5.28%	2202.4	4.98%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-6.001e+00	0.0063	2328.0	5.19%	2164.4	4.90%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.986e+00	0.0063	1336.0	2.98%	1219.0	2.76%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-5.827e+00	0.0074	4640.0	10.34%	4395.0	9.95%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e-2	-5.585e+00	0.0093	2306.0	5.14%	2149.8	4.87%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.484e+00	0.0103	1268.0	2.83%	1159.8	2.62%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e-2	-5.211e+00	0.0134	1791.0	3.99%	1661.9	3.76%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-5.173e+00	0.0139	537.0	1.20%	473.7	1.07%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-5.027e+00	0.0159	452.0	1.01%	395.3	0.89%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-4.947e+00	0.0172	1109.0	2.47%	1014.1	2.29%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-4.873e+00	0.0184	2179.0	4.86%	2038.3	4.61%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.853e+00	0.0187	1110.0	2.47%	1016.6	2.30%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-4.648e+00	0.0228	4559.0	10.16%	4342.3	9.83%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.389e+00	0.0294	571.0	1.27%	511.9	1.16%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-1	-4.313e+00	0.0315	353.0	0.79%	309.0	0.70%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-4.247e+00	0.0335	30.0	0.07%	19.9	0.05%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-4.124e+00	0.0377	329.0	0.73%	287.9	0.65%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e-1	-3.998e+00	0.0425	127.0	0.28%	103.3	0.23%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.950e+00	0.0444	695.0	1.55%	632.4	1.43%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.924e+00	0.0453	1250.0	2.79%	1161.3	2.63%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.903e+00	0.0460	161.0	0.36%	134.5	0.30%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.875e+00	0.0471	952.0	2.12%	878.0	1.99%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.861e+00	0.0475	2499.0	5.57%	2364.8	5.35%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.842e+00	0.0482	1253.0	2.79%	1165.1	2.64%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.826e+00	0.0487	1052.0	2.34%	973.6	2.20%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.737e+00	0.0530	660.0	1.47%	601.5	1.36%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.732e+00	0.0530	324.0	0.72%	286.0	0.65%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e-1	-3.498e+00	0.0666	9986.0	22.25%	9669.5	21.88%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-1	-3.237e+00	0.0860	435.0	0.97%	393.5	0.89%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.217e+00	0.0873	1080.0	2.41%	1008.1	2.28%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.147e+00	0.0932	3655.0	8.14%	3501.7	7.92%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-3.063e+00	0.1008	4528.0	10.09%	4353.7	9.85%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.927e+00	0.1149	2489.0	5.55%	2374.5	5.37%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.795e+00	0.1305	2526.0	5.63%	2413.1	5.46%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.778e+00	0.1321	2853.0	6.36%	2731.8	6.18%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.770e+00	0.1326	654.0	1.46%	606.8	1.37%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-2.750e+00	0.1346	571.0	1.27%	527.8	1.19%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-2.686e+00	0.1428	5131.0	11.43%	4953.6	11.21%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.685e+00	0.1428	2141.0	4.77%	2042.8	4.62%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.655e+00	0.1459	3642.0	8.11%	3502.7	7.93%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-2.630e+00	0.1490	695.0	1.55%	647.8	1.47%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-2.620e+00	0.1497	201.0	0.45%	178.2	0.40%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-2.594e+00	0.1529	3948.0	8.80%	3802.6	8.61%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.479e+00	0.1708	1267.0	2.82%	1200.7	2.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.467e+00	0.1720	1741.0	3.88%	1659.5	3.76%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.452e+00	0.1738	607.0	1.35%	565.4	1.28%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.298e+00	0.2018	814.0	1.81%	766.8	1.74%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.239e+00	0.2132	577.0	1.29%	539.8	1.22%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.183e+00	0.2243	2824.0	6.29%	2719.3	6.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.129e+00	0.2358	3705.0	8.26%	3580.3	8.10%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.124e+00	0.2359	310.0	0.69%	285.2	0.65%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.119e+00	0.2359	63.0	0.14%	53.2	0.12%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.098e+00	0.2399	600.0	1.34%	563.0	1.27%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.070e+00	0.2458	3246.0	7.23%	3134.7	7.09%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.045e+00	0.2508	264.0	0.59%	242.3	0.55%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.030e+00	0.2535	172.0	0.38%	155.5	0.35%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.993e+00	0.2618	4172.0	9.30%	4041.9	9.15%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.928e+00	0.2782	1872.0	4.17%	1799.9	4.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.863e+00	0.2957	2904.0	6.47%	2808.0	6.35%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.821e+00	0.3071	518.0	1.15%	488.6	1.11%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.798e+00	0.3127	3968.0	8.84%	3849.7	8.71%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.790e+00	0.3139	275.0	0.61%	255.6	0.58%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.730e+00	0.3318	737.0	1.64%	701.6	1.59%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.720e+00	0.3338	2512.0	5.60%	2429.9	5.50%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.706e+00	0.3371	4185.0	9.32%	4065.9	9.20%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.658e+00	0.3521	9948.0	22.17%	9718.3	21.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.658e+00	0.3521	1306.0	2.91%	1255.8	2.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.620e+00	0.3629	4648.0	10.36%	4522.8	10.24%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.556e+00	0.3850	12.0	0.03%	9.3	0.02%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.547e+00	0.3869	1572.0	3.50%	1517.8	3.43%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.545e+00	0.3869	11186.0	24.92%	10941.3	24.76%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.516e+00	0.3961	4986.0	11.11%	4858.2	10.99%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.485e+00	0.4069	399.0	0.89%	378.7	0.86%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.475e+00	0.4092	4884.0	10.88%	4760.4	10.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.471e+00	0.4092	6496.0	14.47%	6341.7	14.35%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.422e+00	0.4264	459.0	1.02%	437.6	0.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.422e+00	0.4264	459.0	1.02%	437.6	0.99%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.265e+00	0.4966	3519.0	7.84%	3432.2	7.77%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.246e+00	0.5044	6174.0	13.76%	6038.8	13.67%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.186e+00	0.5333	2044.0	4.55%	1990.9	4.51%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.105e+00	0.5759	5937.0	13.23%	5814.6	13.16%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.098e+00	0.5780	10938.0	24.37%	10730.8	24.29%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.087e+00	0.5817	2601.0	5.80%	2540.2	5.75%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.084e+00	0.5817	7572.0	16.87%	7422.4	16.80%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.082e+00	0.5817	5343.0	11.91%	5232.3	11.84%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.073e+00	0.5831	1127.0	2.51%	1096.8	2.48%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.068e+00	0.5840	7115.0	15.85%	6974.5	15.78%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.060e+00	0.5863	55.0	0.12%	51.5	0.12%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.041e+00	0.5953	2767.0	6.17%	2705.7	6.12%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-9.265e-01	0.6649	4298.0	9.58%	4215.9	9.54%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-9.078e-01	0.6749	1736.0	3.87%	1699.3	3.85%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.436e-01	0.7170	161.0	0.36%	157.0	0.36%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-8.219e-01	0.7299	9422.0	20.99%	9263.4	20.96%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-7.531e-01	0.7789	22.0	0.05%	21.6	0.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-7.474e-01	0.7804	4431.0	9.87%	4358.1	9.86%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-7.156e-01	0.8026	151.0	0.34%	148.6	0.34%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.039e-01	0.8091	414.0	0.92%	407.9	0.92%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.933e-01	0.8147	431.0	0.96%	424.7	0.96%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.855e-01	0.8181	3634.0	8.10%	3579.0	8.10%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.654e-01	0.8316	1153.0	2.57%	1136.7	2.57%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.651e-01	0.8316	3600.0	8.02%	3546.1	8.03%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.610e-01	0.8316	6377.0	14.21%	6281.4	14.22%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.594e-01	0.8316	4352.0	9.70%	4288.0	9.70%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.868e-01	0.8866	891.0	1.99%	881.1	1.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-5.751e-01	0.8938	773.0	1.72%	765.6	1.73%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.450e-01	0.9177	2547.0	5.68%	2517.6	5.70%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.372e-01	0.9216	264.0	0.59%	263.7	0.60%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.005e-01	0.9527	2493.0	5.55%	2467.6	5.58%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.878e-01	0.9614	97.0	0.22%	98.7	0.22%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.869e-01	0.9614	1699.0	3.79%	1684.7	3.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.851e-01	0.9614	934.0	2.08%	928.2	2.10%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.689e-01	0.9694	373.0	0.83%	373.1	0.84%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-4.155e-01	1.0000	4495.0	10.02%	4451.8	10.08%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.125e-01	1.0000	2417.0	5.39%	2399.3	5.43%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-3.972e-01	1.0000	757.0	1.69%	757.9	1.72%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.797e-01	1.0000	1342.0	2.99%	1338.7	3.03%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.579e-01	1.0000	11664.0	25.99%	11531.9	26.10%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.444e-01	1.0000	515.0	1.15%	519.7	1.18%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.293e-01	1.0000	381.0	0.85%	386.9	0.88%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.257e-01	1.0000	4418.0	9.84%	4386.0	9.93%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.134e-01	1.0000	669.0	1.49%	674.9	1.53%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.000e-01	1.0000	4898.0	10.91%	4864.8	11.01%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-2.855e-01	1.0000	4566.0	10.17%	4538.9	10.27%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.833e-01	1.0000	882.0	1.97%	888.2	2.01%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.687e-01	1.0000	83.0	0.18%	88.1	0.20%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.569e-01	1.0000	1104.0	2.46%	1111.1	2.51%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.518e-01	1.0000	1194.0	2.66%	1201.0	2.72%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.434e-01	1.0000	380.0	0.85%	389.9	0.88%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.262e-01	1.0000	1657.0	3.69%	1664.3	3.77%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.196e-01	1.0000	2494.0	5.56%	2496.6	5.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.150e-01	1.0000	5859.0	13.05%	5829.1	13.19%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.050e-01	1.0000	94.0	0.21%	101.8	0.23%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.852e-01	1.0000	2925.0	6.52%	2929.0	6.63%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.813e-01	1.0000	181.0	0.40%	191.5	0.43%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.809e-01	1.0000	237.0	0.53%	248.9	0.56%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.746e-01	1.0000	783.0	1.74%	798.9	1.81%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.582e-01	1.0000	2072.0	4.62%	2086.7	4.72%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.571e-01	1.0000	3085.0	6.87%	3094.0	7.00%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.519e-01	1.0000	322.0	0.72%	336.0	0.76%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.435e-01	1.0000	5682.0	12.66%	5671.9	12.84%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.420e-01	1.0000	5304.0	11.82%	5297.4	11.99%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.383e-01	1.0000	5836.0	13.00%	5825.6	13.18%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.263e-01	1.0000	732.0	1.63%	752.9	1.70%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.203e-01	1.0000	2059.0	4.59%	2080.3	4.71%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.201e-01	1.0000	1043.0	2.32%	1066.0	2.41%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.150e-01	1.0000	1142.0	2.54%	1165.2	2.64%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.109e-01	1.0000	6238.0	13.90%	6232.8	14.11%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.092e-01	1.0000	214.0	0.48%	229.9	0.52%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-8.797e-02	1.0000	3119.0	6.95%	3144.7	7.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.474e-02	1.0000	10403.0	23.18%	10365.9	23.46%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.528e-02	1.0000	1250.0	2.79%	1281.0	2.90%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-7.150e-02	1.0000	93.0	0.21%	106.6	0.24%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.467e-02	1.0000	1128.0	2.51%	1162.0	2.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.471e-02	1.0000	259.0	0.58%	281.4	0.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.062e-02	1.0000	335.0	0.75%	360.3	0.82%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.062e-02	1.0000	335.0	0.75%	360.3	0.82%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.969e-02	1.0000	17.0	0.04%	24.8	0.06%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-4.626e-02	1.0000	887.0	1.98%	923.1	2.09%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.590e-02	1.0000	603.0	1.34%	635.1	1.44%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.322e-02	1.0000	1329.0	2.96%	1370.6	3.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.080e-02	1.0000	2002.0	4.46%	2047.2	4.63%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.012e-02	1.0000	4282.0	9.54%	4324.8	9.79%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.832e-02	1.0000	2820.0	6.28%	2867.7	6.49%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.926e-02	1.0000	1885.0	4.20%	1936.8	4.38%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.764e-02	1.0000	3.0	0.01%	7.1	0.02%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.407e-02	1.0000	596.0	1.33%	635.5	1.44%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.309e-02	1.0000	318.0	0.71%	349.3	0.79%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.282e-02	1.0000	4371.0	9.74%	4428.4	10.02%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.154e-02	1.0000	1422.0	3.17%	1475.3	3.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.111e-02	1.0000	179.0	0.40%	204.1	0.46%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.929e-02	1.0000	140.0	0.31%	163.5	0.37%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.498e-02	1.0000	212.0	0.47%	241.8	0.55%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.432e-02	1.0000	622.0	1.39%	667.7	1.51%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.610e-03	1.0000	96.0	0.21%	119.9	0.27%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-8.188e-03	1.0000	640.0	1.43%	691.5	1.56%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.021e-03	1.0000	1459.0	3.25%	1527.7	3.46%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.851e-03	1.0000	1847.0	4.12%	1921.0	4.35%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.448e-03	1.0000	195.0	0.43%	228.0	0.52%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-7.155e-03	1.0000	3958.0	8.82%	4043.8	9.15%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-6.299e-03	1.0000	4243.0	9.45%	4331.2	9.80%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.723e-03	1.0000	2263.0	5.04%	2345.6	5.31%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.428e-03	1.0000	2167.0	4.83%	2249.9	5.09%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-4.707e-03	1.0000	5436.0	12.11%	5530.9	12.52%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.668e-03	1.0000	3071.0	6.84%	3162.7	7.16%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.656e-03	1.0000	43.0	0.10%	61.1	0.14%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.475e-03	1.0000	2166.0	4.83%	2255.2	5.10%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.080e-03	1.0000	351.0	0.78%	398.0	0.90%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.869e-03	1.0000	1930.0	4.30%	2019.3	4.57%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-2.416e-03	1.0000	277.0	0.62%	321.8	0.73%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.389e-03	1.0000	1411.0	3.14%	1494.4	3.38%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.316e-03	1.0000	1047.0	2.33%	1128.9	2.55%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.209e-03	1.0000	192.0	0.43%	233.7	0.53%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.133e-03	1.0000	6751.0	15.04%	6876.0	15.56%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-9.780e-04	1.0000	47.0	0.10%	70.6	0.16%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-9.160e-04	1.0000	312.0	0.70%	364.9	0.83%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-5.250e-04	1.0000	772.0	1.72%	852.6	1.93%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.210e-04	1.0000	381.0	0.85%	441.1	1.00%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-4.120e-04	1.0000	1489.0	3.32%	1594.8	3.61%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.570e-04	1.0000	3486.0	7.77%	3629.3	8.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.460e-04	1.0000	4259.0	9.49%	4409.2	9.98%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.910e-04	1.0000	647.0	1.44%	729.9	1.65%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.790e-04	1.0000	64.0	0.14%	95.4	0.22%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.510e-04	1.0000	3386.0	7.54%	3536.4	8.00%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.100e-05	1.0000	2033.0	4.53%	2169.9	4.91%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-5.100e-05	1.0000	940.0	2.09%	1046.9	2.37%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.800e-05	1.0000	13246.0	29.51%	13414.2	30.36%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.500e-05	1.0000	3802.0	8.47%	3978.4	9.00%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.700e-05	1.0000	1305.0	2.91%	1431.6	3.24%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-2.400e-05	1.0000	3023.0	6.74%	3193.7	7.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.200e-05	1.0000	2015.0	4.49%	2165.3	4.90%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.900e-05	1.0000	990.0	2.21%	1106.2	2.50%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.600e-05	1.0000	940.0	2.09%	1055.5	2.39%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.000e-06	1.0000	1458.0	3.25%	1600.9	3.62%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-6.000e-06	1.0000	2310.0	5.15%	2481.8	5.62%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.000e-06	1.0000	575.0	1.28%	678.2	1.53%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.000e-06	1.0000	1656.0	3.69%	1816.7	4.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.000e-06	1.0000	820.0	1.83%	942.7	2.13%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.000e-06	1.0000	2182.0	4.86%	2368.2	5.36%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.000e-06	1.0000	1292.0	2.88%	1447.6	3.28%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	4952.0	11.03%	5205.5	11.78%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	1798.0	4.01%	1983.0	4.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-0.000e+00	1.0000	1039.0	2.32%	1189.1	2.69%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	275.0	0.61%	366.8	0.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	1695.0	3.78%	1891.2	4.28%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-0.000e+00	1.0000	850.0	1.89%	1008.1	2.28%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-0.000e+00	1.0000	6776.0	15.10%	7104.1	16.08%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	4011.0	8.94%	4297.4	9.73%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-0.000e+00	1.0000	3950.0	8.80%	4236.2	9.59%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	4146.0	9.24%	4438.8	10.05%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	1800.0	4.01%	2022.5	4.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-0.000e+00	1.0000	3282.0	7.31%	3563.1	8.06%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-0.000e+00	1.0000	188.0	0.42%	279.7	0.63%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-0.000e+00	1.0000	2906.0	6.48%	3207.3	7.26%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	5704.0	12.71%	6091.2	13.79%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-0.000e+00	1.0000	2676.0	5.96%	2980.1	6.74%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-0.000e+00	1.0000	3130.0	6.97%	3465.8	7.84%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	2621.0	5.84%	2943.0	6.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	3752.0	8.36%	4125.8	9.34%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	3239.0	7.22%	3602.7	8.15%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	7631.0	17.00%	8156.0	18.46%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	3376.0	7.52%	3784.6	8.57%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	539.0	1.20%	871.0	1.97%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	0.000e+00	1.0000	1687.0	3.76%	2119.7	4.80%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	4833.0	10.77%	5622.1	12.72%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	5831.0	12.99%	6789.6	15.37%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	348.0	0.78%	542.8	1.23%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	431.0	0.96%	803.5	1.82%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	5067.0	11.29%	5941.1	13.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	8388.0	18.69%	9557.4	21.63%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	2176.0	4.85%	2590.3	5.86%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	132.0	0.29%	250.0	0.57%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	2588.0	5.77%	3185.4	7.21%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	0.000e+00	1.0000	2481.0	5.53%	2925.9	6.62%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	0.000e+00	1.0000	4149.0	9.24%	4650.7	10.53%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	0.000e+00	1.0000	2361.0	5.26%	2835.8	6.42%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	4325.0	9.64%	5042.7	11.41%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	1931.0	4.30%	2404.6	5.44%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	0.000e+00	1.0000	315.0	0.70%	514.8	1.17%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	0.000e+00	1.0000	512.0	1.14%	742.9	1.68%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	11261.0	25.09%	12948.7	29.30%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	156.0	0.35%	411.5	0.93%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	0.000e+00	1.0000	1652.0	3.68%	2103.9	4.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	0.000e+00	1.0000	1367.0	3.05%	1699.1	3.85%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	16206.0	36.11%	18266.1	41.34%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	164.0	0.37%	297.2	0.67%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	0.000e+00	1.0000	1439.0	3.21%	1846.5	4.18%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	6243.0	13.91%	7331.1	16.59%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	3185.0	7.10%	3831.0	8.67%